메뉴 건너뛰기




Volumn 22, Issue 5, 2012, Pages 957-965

Sensitive mapping of recombination hotspots using sequencing-based detection of ssDNA

Author keywords

[No Author keywords available]

Indexed keywords

SINGLE STRANDED DNA;

EID: 84860583747     PISSN: 10889051     EISSN: 15495469     Source Type: Journal    
DOI: 10.1101/gr.130583.111     Document Type: Article
Times cited : (94)

References (30)
  • 2
    • 0017691821 scopus 로고
    • Spermatogenic cells of the prepuberal mouse. Isolation and morphological characterization
    • Bellve AR, Cavicchia JC, Millette CF, O'Brien DA, Bhatnagar YM, Dym M. 1977. Spermatogenic cells of the prepuberal mouse. Isolation and morphological characterization. J Cell Biol 74: 68-85. (Pubitemid 8141486)
    • (1977) Journal of Cell Biology , vol.74 , Issue.1 , pp. 68-85
    • Bellve, A.R.1    Cavicchia, J.C.2    Millette, C.F.3
  • 3
    • 36549081426 scopus 로고    scopus 로고
    • Mapping of Meiotic Single-Stranded DNA Reveals Double-Strand-Break Hotspots near Centromeres and Telomeres
    • DOI 10.1016/j.cub.2007.10.066, PII S0960982207022026
    • Blitzblau HG, BellGW, Rodriguez J, Bell SP, Hochwagen A. 2007. Mapping of meiotic single-stranded DNA reveals double-stranded-break hotspots near centromeres and telomeres. Curr Biol 17: 2003-2012. (Pubitemid 350180476)
    • (2007) Current Biology , vol.17 , Issue.23 , pp. 2003-2012
    • Blitzblau, H.G.1    Bell, G.W.2    Rodriguez, J.3    Bell, S.P.4    Hochwagen, A.5
  • 4
    • 58749092121 scopus 로고    scopus 로고
    • Histone H3 lysine 4 trimethylation marks meiotic recombination initiation sites
    • Borde V, Robine N, Lin W, Bonfils S, Geli V, Nicolas A. 2009. Histone H3 lysine 4 trimethylation marks meiotic recombination initiation sites. EMBO J 28: 99-111.
    • (2009) EMBO J , vol.28 , pp. 99-111
    • Borde, V.1    Robine, N.2    Lin, W.3    Bonfils, S.4    Geli, V.5    Nicolas, A.6
  • 5
    • 0014407722 scopus 로고
    • Repeated sequences in DNA. Hundreds of thousands of copies of DNA sequences have been incorporated into the genomes of higher organisms
    • Britten RJ, Kohne DE. 1968. Repeated sequences in DNA. Hundreds of thousands of copies of DNA sequences have been incorporated into the genomes of higher organisms. Science 161: 529-540.
    • (1968) Science , vol.161 , pp. 529-540
    • Britten, R.J.1    Kohne, D.E.2
  • 6
    • 38549142662 scopus 로고    scopus 로고
    • Mapping meiotic single-strand DNA reveals a new landscape of DNA double-strand breaks in Saccharomyces cerevisiae
    • doi: 10.1371/journal.pbio.0050324
    • Buhler C, Borde V, Lichten M. 2007. Mapping meiotic single-strand DNA reveals a new landscape of DNA double-strand breaks in Saccharomyces cerevisiae. PLoS Biol 5: e324. doi: 10.1371/journal.pbio.0050324.
    • (2007) PLoS Biol , vol.5
    • Buhler, C.1    Borde, V.2    Lichten, M.3
  • 9
    • 0034633494 scopus 로고    scopus 로고
    • Global mapping of meiotic recombination hotspots and coldspots in the yeast Saccharomyces cerevisiae
    • Gerton JL, DeRisi J, Shroff R, Lichten M, Brown PO, Petes TD. 2000. Global mapping of meiotic recombination hotspots and coldspots in the yeast Saccharomyces cerevisiae. Proc Natl Acad Sci 97: 11383-11390.
    • (2000) Proc Natl Acad Sci , vol.97 , pp. 11383-11390
    • Gerton, J.L.1    DeRisi, J.2    Shroff, R.3    Lichten, M.4    Brown, P.O.5    Petes, T.D.6
  • 10
    • 70349325676 scopus 로고    scopus 로고
    • Genome reprogramming during sporulation
    • Govin J, Berger SL. 2009. Genome reprogramming during sporulation. Int J Dev Biol 53: 425-432.
    • (2009) Int J Dev Biol , vol.53 , pp. 425-432
    • Govin, J.1    Berger, S.L.2
  • 11
    • 79953300078 scopus 로고    scopus 로고
    • FIMO: Scanning for occurrences of a given motif
    • Grant CE, Bailey TL, Noble WS. 2011. FIMO: Scanning for occurrences of a given motif. Bioinformatics 27: 1017-1018.
    • (2011) Bioinformatics , vol.27 , pp. 1017-1018
    • Grant, C.E.1    Bailey, T.L.2    Noble, W.S.3
  • 13
    • 70350783942 scopus 로고    scopus 로고
    • Analysis of meiotic recombination products from human sperm
    • Kauppi L, May CA, Jeffreys AJ. 2009. Analysis of meiotic recombination products from human sperm. Methods Mol Biol 557: 323-355.
    • (2009) Methods Mol Biol , vol.557 , pp. 323-355
    • Kauppi, L.1    May, C.A.2    Jeffreys, A.J.3
  • 14
    • 67649884743 scopus 로고    scopus 로고
    • Fast and accurate short read alignment with Burrows-Wheeler transform
    • Li H, Durbin R. 2009. Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics 25: 1754-1760.
    • (2009) Bioinformatics , vol.25 , pp. 1754-1760
    • Li, H.1    Durbin, R.2
  • 15
    • 0023759044 scopus 로고
    • Amplification and analysis of DNA sequences in single human sperm and diploid cells
    • Li HH, Gyllensten UB, Cui XF, Saiki RK, Erlich HA, Arnheim N. 1988. Amplification and analysis of DNA sequences in single human sperm and diploid cells. Nature 335: 414-417.
    • (1988) Nature , vol.335 , pp. 414-417
    • Li, H.H.1    Gyllensten, U.B.2    Cui, X.F.3    Saiki, R.K.4    Erlich, H.A.5    Arnheim, N.6
  • 18
    • 47949108144 scopus 로고    scopus 로고
    • High-resolution mapping of meiotic crossovers and non-crossovers in yeast
    • Mancera E, Bourgon R, Brozzi A, Huber W, Steinmetz LM. 2008. High-resolution mapping of meiotic crossovers and non-crossovers in yeast. Nature 454: 479-485.
    • (2008) Nature , vol.454 , pp. 479-485
    • Mancera, E.1    Bourgon, R.2    Brozzi, A.3    Huber, W.4    Steinmetz, L.M.5
  • 19
    • 0017366616 scopus 로고
    • Separation of spermatogenic cells and nuclei from rodent testes
    • Meistrich ML. 1977. Separation of spermatogenic cells and nuclei from rodent testes. Methods Cell Biol 15: 15-54. (Pubitemid 8096832)
    • (1977) Methods in Cell Biology , vol.VOL. XV , pp. 15-54
    • Meistrich, M.L.1
  • 21
    • 34247382564 scopus 로고    scopus 로고
    • Initiation and resolution of interhomolog connections: Crossover and non-crossover sites along mouse synaptonemal complexes
    • DOI 10.1242/jcs.03394
    • Moens PB, Marcon E, Shore JS, Kochakpour N, Spyropoulos B. 2007. Initiation and resolution of interhomolog connections: Crossover and non-crossover sites along mouse synaptonemal complexes. J Cell Sci 120: 1017-1027. (Pubitemid 46638515)
    • (2007) Journal of Cell Science , vol.120 , Issue.6 , pp. 1017-1027
    • Moens, P.B.1    Marcon, E.2    Shore, J.S.3    Kochakpour, N.4    Spyropoulos, B.5
  • 22
    • 33746144795 scopus 로고    scopus 로고
    • Clarifying the mechanics of DNA strand exchange in meiotic recombination
    • DOI 10.1038/nature04885, PII NATURE04885
    • Neale MJ, Keeney S. 2006. Clarifying the mechanics of DNA strand exchange in meiotic recombination. Nature 442: 153-158. (Pubitemid 44086556)
    • (2006) Nature , vol.442 , Issue.7099 , pp. 153-158
    • Neale, M.J.1    Keeney, S.2
  • 23
    • 77249144000 scopus 로고    scopus 로고
    • Mammalian recombination hot spots: Properties, control and evolution
    • Paigen K, Petkov P. 2010. Mammalian recombination hot spots: Properties, control and evolution. Nat Rev Genet 11: 221-233.
    • (2010) Nat Rev Genet , vol.11 , pp. 221-233
    • Paigen, K.1    Petkov, P.2
  • 25
    • 70349312354 scopus 로고    scopus 로고
    • ChIP-seq: Advantages and challenges of a maturing technology
    • Park PJ. 2009. ChIP-seq: Advantages and challenges of a maturing technology. Nat Rev Genet 10: 669-680.
    • (2009) Nat Rev Genet , vol.10 , pp. 669-680
    • Park, P.J.1
  • 26
    • 0035345013 scopus 로고    scopus 로고
    • Meiotic recombination hot spots and cold spots
    • DOI 10.1038/35072078
    • Petes TD. 2001. Meiotic recombination hot spots and cold spots. Nat Rev Genet 2: 360-369. (Pubitemid 33673074)
    • (2001) Nature Reviews Genetics , vol.2 , Issue.5 , pp. 360-369
    • Petes, T.D.1
  • 27
    • 0346783290 scopus 로고    scopus 로고
    • The Hop2 protein has a direct role in promoting interhomolog interactions during mouse meiosis
    • DOI 10.1016/S1534-5807(03)00369-1, PII S1534580703003691
    • Petukhova GV, Romanienko PJ, Camerini-Otero RD. 2003. The Hop2 protein has a direct role in promoting interhomolog interactions during mouse meiosis. Dev Cell 5: 927-936. (Pubitemid 37527692)
    • (2003) Developmental Cell , vol.5 , Issue.6 , pp. 927-936
    • Petukhova, G.V.1    Romanienko, P.J.2    Camerini-Otero, R.D.3
  • 28
    • 79951869787 scopus 로고    scopus 로고
    • Dynamic and selective DNA-binding activity of Smc5, a core component of the Smc5-Smc6 complex
    • Roy MA, Siddiqui N, D'Amours D. 2011. Dynamic and selective DNA-binding activity of Smc5, a core component of the Smc5-Smc6 complex. Cell Cycle 10: 690-700.
    • (2011) Cell Cycle , vol.10 , pp. 690-700
    • Roy, M.A.1    Siddiqui, N.2    D'Amours, D.3
  • 30
    • 0027978039 scopus 로고
    • Catalysis of ATP-dependent homologous DNA pairing and strand exchange by yeast RAD51 protein
    • Sung P. 1994. Catalysis of ATP-dependent homologous DNA pairing and strand exchange by yeast RAD51 protein. Science 265: 1241-1243. (Pubitemid 24291984)
    • (1994) Science , vol.265 , Issue.5176 , pp. 1241-1243
    • Sung, P.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.