메뉴 건너뛰기




Volumn 7, Issue 5, 2012, Pages

Assessment of three mitochondrial genes (16S, Cytb, CO1) for identifying species in the Praomyini tribe (Rodentia: Muridae)

Author keywords

[No Author keywords available]

Indexed keywords

16S GENE; ARTICLE; CO1 GENE; CONTROLLED STUDY; CYTB GENE; DNA EXTRACTION; GENE AMPLIFICATION; GENE MUTATION; GENE SEQUENCE; GENETIC VARIABILITY; GENOTYPE; GEOGRAPHIC DISTRIBUTION; MITOCHONDRIAL GENE; MURIDAE; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENETIC TREE; PRAOMYINI TRIBE; SEQUENCE ALIGNMENT; SPECIES IDENTIFICATION; TAXONOMY; UNINDEXED SEQUENCE; ANIMAL; BIODIVERSITY; CLASSIFICATION; DNA BARCODING; DNA SEQUENCE; GENETICS; METHODOLOGY;

EID: 84860508725     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0036586     Document Type: Article
Times cited : (94)

References (89)
  • 1
    • 48349086614 scopus 로고    scopus 로고
    • Phylogeny and biogeography of African Murinae based on mitochondrial and nuclear gene sequences, with a new tribal classification of the subfamily
    • Lecompte E, Aplin K, Denys C, Catzeflis F, Chades M, et al. (2008) Phylogeny and biogeography of African Murinae based on mitochondrial and nuclear gene sequences, with a new tribal classification of the subfamily. BMC Evol Biol 8: 199.
    • (2008) BMC Evol Biol , vol.8 , pp. 199
    • Lecompte, E.1    Aplin, K.2    Denys, C.3    Catzeflis, F.4    Chades, M.5
  • 2
    • 33244465497 scopus 로고    scopus 로고
    • Systematics of African lowland rainforest Praomys (Rodentia, Muridae) based on molecular and craniometrical data
    • Nicolas V, Verheyen E, Verheyen W, Hulselmans J, Dillen M, et al. (2005) Systematics of African lowland rainforest Praomys (Rodentia, Muridae) based on molecular and craniometrical data. Zool J Linn Soc 145: 539-553.
    • (2005) Zool J Linn Soc , vol.145 , pp. 539-553
    • Nicolas, V.1    Verheyen, E.2    Verheyen, W.3    Hulselmans, J.4    Dillen, M.5
  • 3
    • 27744531732 scopus 로고    scopus 로고
    • Confrontation of morphological and molecular data: the Praomys group (Rodentia, Murinae) as a case of adaptive convergences and morphological stasis
    • Lecompte E, Denys C, Granjon L, (2005) Confrontation of morphological and molecular data: the Praomys group (Rodentia, Murinae) as a case of adaptive convergences and morphological stasis. Mol Phylogenet Evol 37: 899-919.
    • (2005) Mol Phylogenet Evol , vol.37 , pp. 899-919
    • Lecompte, E.1    Denys, C.2    Granjon, L.3
  • 4
    • 27744584264 scopus 로고    scopus 로고
    • Praomys petteri: une nouvelle espèce de Muridae africains (Mammalia, Rodentia)
    • Van der Straeten E, Lecompte E, Denys C, (2003) Praomys petteri: une nouvelle espèce de Muridae africains (Mammalia, Rodentia). Bonn Zool Beitr 50: 329-345.
    • (2003) Bonn Zool Beitr , vol.50 , pp. 329-345
    • van der Straeten, E.1    Lecompte, E.2    Denys, C.3
  • 5
    • 33244454743 scopus 로고    scopus 로고
    • Mitochondrial phylogeny of African wood mice, genus Hylomyscus (Rodentia, Muridae): implications for their taxonomy and biogeography
    • Nicolas V, Quérouil S, Verheyen E, Verheyen W, Mboumba JF, et al. (2006) Mitochondrial phylogeny of African wood mice, genus Hylomyscus (Rodentia, Muridae): implications for their taxonomy and biogeography. Mol Phylogenet Evol 38: 779-793.
    • (2006) Mol Phylogenet Evol , vol.38 , pp. 779-793
    • Nicolas, V.1    Quérouil, S.2    Verheyen, E.3    Verheyen, W.4    Mboumba, J.F.5
  • 6
    • 39749099920 scopus 로고    scopus 로고
    • Morphometrical variation in Hylomyscus alleni and Hylomyscus stella (Rodentia, Muridae), and description of a new species
    • Nicolas V, Wendelen W, Barrière P, Dudu A, Colyn M, (2008) Morphometrical variation in Hylomyscus alleni and Hylomyscus stella (Rodentia, Muridae), and description of a new species. J Mammal 89: 222-231.
    • (2008) J Mammal , vol.89 , pp. 222-231
    • Nicolas, V.1    Wendelen, W.2    Barrière, P.3    Dudu, A.4    Colyn, M.5
  • 7
    • 77956214890 scopus 로고    scopus 로고
    • Mitochondrial DNA and morphometrical identification of a new species of Hylomyscus (Rodentia: Muridae) from West Africa
    • Nicolas V, Olayemi A, Wendelen W, Colyn M, (2010) Mitochondrial DNA and morphometrical identification of a new species of Hylomyscus (Rodentia: Muridae) from West Africa. Zootaxa 2579: 30-44.
    • (2010) Zootaxa , vol.2579 , pp. 30-44
    • Nicolas, V.1    Olayemi, A.2    Wendelen, W.3    Colyn, M.4
  • 8
    • 84860517406 scopus 로고    scopus 로고
    • Notes on the Praomys of Angola with the description of a new species (Mammalia: Rodentia: Muridae)
    • Van der Straeten E, (2008) Notes on the Praomys of Angola with the description of a new species (Mammalia: Rodentia: Muridae). Stuttg Beitr Naturk, ser A Neue Serie 1: 121-131.
    • (2008) Stuttg Beitr Naturk, Ser A Neue Serie , vol.1 , pp. 121-131
    • van der Straeten, E.1
  • 9
    • 0002408744 scopus 로고    scopus 로고
    • Praomys degraaffi, a new species of muridae (Mammalia) from central Africa
    • Van der Straeten E, Kerbis Peterhans JC, (1999) Praomys degraaffi, a new species of muridae (Mammalia) from central Africa. S Afr J Zool 34: 80-90.
    • (1999) S Afr J Zool , vol.34 , pp. 80-90
    • van der Straeten, E.1    Kerbis Peterhans, J.C.2
  • 10
    • 0002823667 scopus 로고
    • Systematics and distribution of Praomys from the Masako Forest Reserve (Zaire) with the description of a new species
    • In: Peters G, Hutterer R, editors, Bonn, Museum Alexander Koening
    • Van der Straeten E, Dudu AM, (1990) Systematics and distribution of Praomys from the Masako Forest Reserve (Zaire) with the description of a new species. In: Peters G, Hutterer R, editors. Vertebrates in the tropics Bonn Museum Alexander Koening pp. 73-83.
    • (1990) Vertebrates in the Tropics , pp. 73-83
    • van der Straeten, E.1    Dudu, A.M.2
  • 11
    • 0001851450 scopus 로고
    • Praomys misonnei, an new species of muridae from eastern Zaïre
    • Van der Straeten E, Dieterlen F, (1987) Praomys misonnei, an new species of muridae from eastern Zaïre. Stuttg Beitr Naturk, ser A 402: 1-11.
    • (1987) Stuttg Beitr Naturk, Ser A , vol.402 , pp. 1-11
    • van der Straeten, E.1    Dieterlen, F.2
  • 12
    • 56849102170 scopus 로고    scopus 로고
    • An update on the taxonomy and geographic distribution of the cryptic species Mastomys kollmannspergeri (Muridae, Murinae) using combined cytogenetic and molecular data
    • Dobigny G, Lecompte E, Tatard C, Gauthier P, Ba K, et al. (2008) An update on the taxonomy and geographic distribution of the cryptic species Mastomys kollmannspergeri (Muridae, Murinae) using combined cytogenetic and molecular data. J Zool 276: 368-374.
    • (2008) J Zool , vol.276 , pp. 368-374
    • Dobigny, G.1    Lecompte, E.2    Tatard, C.3    Gauthier, P.4    Ba, K.5
  • 13
    • 18144424074 scopus 로고    scopus 로고
    • Molecular identification of four cryptic species of Mastomys (Rodentia, Murinae)
    • Lecompte E, Brouat C, Duplantier JM, Galan M, Granjon L, et al. (2005) Molecular identification of four cryptic species of Mastomys (Rodentia, Murinae). Biochem Syst Ecol 33: 681-689.
    • (2005) Biochem Syst Ecol , vol.33 , pp. 681-689
    • Lecompte, E.1    Brouat, C.2    Duplantier, J.M.3    Galan, M.4    Granjon, L.5
  • 14
    • 0036656393 scopus 로고    scopus 로고
    • Cytochrome b-based phylogeny of the Praomys group (Rodentia, Murinae): a new African radiation?
    • Lecompte E, Granjon L, Peterhans JK, Denys C, (2002) Cytochrome b-based phylogeny of the Praomys group (Rodentia, Murinae): a new African radiation? C R Biol 325: 827-840.
    • (2002) C R Biol , vol.325 , pp. 827-840
    • Lecompte, E.1    Granjon, L.2    Peterhans, J.K.3    Denys, C.4
  • 15
    • 77957136635 scopus 로고    scopus 로고
    • Molecular and morphometric variation in two sibling species of the genus Praomys (Rodentia: Muridae): implications for biogeography
    • Nicolas V, Akpatou B, Wendelen W, Kerbis Peterhans J, Olayemi A, et al. (2010) Molecular and morphometric variation in two sibling species of the genus Praomys (Rodentia: Muridae): implications for biogeography. Zool J Linn Soc 160: 397-419.
    • (2010) Zool J Linn Soc , vol.160 , pp. 397-419
    • Nicolas, V.1    Akpatou, B.2    Wendelen, W.3    Kerbis Peterhans, J.4    Olayemi, A.5
  • 16
    • 79958269128 scopus 로고    scopus 로고
    • Novel arenavirus sequences in Hylomyscus sp. and Mus (Nannomys) setulosus from Cote d'Ivoire: implications for evolution of arenaviruses in Africa
    • Coulibaly-N'Golo D, Allali B, Kouassi SK, Fichet-Calvet E, Becker-Ziaja B, et al. (2011) Novel arenavirus sequences in Hylomyscus sp. and Mus (Nannomys) setulosus from Cote d'Ivoire: implications for evolution of arenaviruses in Africa. PLoS One 6: e20893.
    • (2011) PLoS One , vol.6
    • Coulibaly-N'Golo, D.1    Allali, B.2    Kouassi, S.K.3    Fichet-Calvet, E.4    Becker-Ziaja, B.5
  • 17
    • 48549097162 scopus 로고    scopus 로고
    • Diversity and distribution of murid rodent populations between forest and derived savanna sites within south western Nigeria
    • DOI 10.1007/s10531-008-9389-1
    • Olayemi A, Akinpelu A, (2008) Diversity and distribution of murid rodent populations between forest and derived savanna sites within south western Nigeria. Biodivers Conserv DOI 10.1007/s10531-008-9389-1.
    • (2008) Biodivers Conserv
    • Olayemi, A.1    Akinpelu, A.2
  • 18
    • 33645757785 scopus 로고    scopus 로고
    • Petits mammifères terrestres (Soricidés et Muridés) du Complexe d'Aires Protégées de Gamba, Gabon: composition taxinomique et comparaison de méthodes d'échantillonnage
    • O'Brien C, McShea W, Guimondou S, Barrière P, Carleton M, (2006) Petits mammifères terrestres (Soricidés et Muridés) du Complexe d'Aires Protégées de Gamba, Gabon: composition taxinomique et comparaison de méthodes d'échantillonnage. Bull Biol Soc Wash 12: 137-148.
    • (2006) Bull Biol Soc Wash , vol.12 , pp. 137-148
    • O'Brien, C.1    McShea, W.2    Guimondou, S.3    Barrière, P.4    Carleton, M.5
  • 19
    • 84860543616 scopus 로고    scopus 로고
    • A rapid survey of bats from north Lorma, Gola and Grebo forests, Liberia, with notes on other small mammal groups (shrew and rodents)
    • Monadjem A, Fahr J, (2005) A rapid survey of bats from north Lorma, Gola and Grebo forests, Liberia, with notes on other small mammal groups (shrew and rodents). RAP pp. 20-25.
    • (2005) RAP , pp. 20-25
    • Monadjem, A.1    Fahr, J.2
  • 20
    • 67349192495 scopus 로고    scopus 로고
    • Comparison of multimammate mouse (Mastomys natalensis) demography in monoculture and mosaic agricultural habitat: Implications for pest management
    • Sluydts V, Davis S, Mercelis S, Leirs H, (2009) Comparison of multimammate mouse (Mastomys natalensis) demography in monoculture and mosaic agricultural habitat: Implications for pest management. Crop Protection 28: 647-654.
    • (2009) Crop Protection , vol.28 , pp. 647-654
    • Sluydts, V.1    Davis, S.2    Mercelis, S.3    Leirs, H.4
  • 21
    • 0034781034 scopus 로고    scopus 로고
    • Comparing strategies for controlling an African pest rodent: an empirically based theoretical study
    • Stenseth NC, Leirs H, Mercelis S, Mwanjabe P, (2001) Comparing strategies for controlling an African pest rodent: an empirically based theoretical study. J Appl Ecol 38: 1020-1031.
    • (2001) J Appl Ecol , vol.38 , pp. 1020-1031
    • Stenseth, N.C.1    Leirs, H.2    Mercelis, S.3    Mwanjabe, P.4
  • 22
    • 53549125535 scopus 로고    scopus 로고
    • Potential mammalian reservoirs in a bubonic plague outbreak focus in Mbulu District, northern Tanzania, in 2007
    • Makundi RH, Massawe AW, Mulungu LS, Katakweba A, Mbise TJ, et al. (2008) Potential mammalian reservoirs in a bubonic plague outbreak focus in Mbulu District, northern Tanzania, in 2007. Mammalia 72: 253-257.
    • (2008) Mammalia , vol.72 , pp. 253-257
    • Makundi, R.H.1    Massawe, A.W.2    Mulungu, L.S.3    Katakweba, A.4    Mbise, T.J.5
  • 23
    • 33750519877 scopus 로고    scopus 로고
    • A model of Leptospirosis infection in an African rodent to determine risk to humans: seasonal fluctuations and the impact of rodent control
    • Holt J, Davis S, Leirs H, (2006) A model of Leptospirosis infection in an African rodent to determine risk to humans: seasonal fluctuations and the impact of rodent control. Acta Trop 99: 218-225.
    • (2006) Acta Trop , vol.99 , pp. 218-225
    • Holt, J.1    Davis, S.2    Leirs, H.3
  • 25
    • 33847698212 scopus 로고    scopus 로고
    • Lassa fever in West African sub-region: an overview
    • Ogbu O, Ajuluchukwu E, Uneke CJ, (2007) Lassa fever in West African sub-region: an overview. J Vector Borne Dis 44: 1-11.
    • (2007) J Vector Borne Dis , vol.44 , pp. 1-11
    • Ogbu, O.1    Ajuluchukwu, E.2    Uneke, C.J.3
  • 26
    • 38949101229 scopus 로고    scopus 로고
    • First detection of mycobacteria in African rodents and insectivores, using stratified pool screening
    • Durnez L, Eddyani M, Mgode GF, Katakweba A, Katholi CR, et al. (2008) First detection of mycobacteria in African rodents and insectivores, using stratified pool screening. Appl Environ Microbiol 74: 768-773.
    • (2008) Appl Environ Microbiol , vol.74 , pp. 768-773
    • Durnez, L.1    Eddyani, M.2    Mgode, G.F.3    Katakweba, A.4    Katholi, C.R.5
  • 28
    • 84871271746 scopus 로고    scopus 로고
    • Rapid Survey of the Small Mammals of Ajenjua Bepo and Mamang River Forest Reserves, Ghana
    • In: McCullough J, Hoke P, Naskrecki P, Yaw Osei-Owusu Y, editors, Arlington, Conservation International
    • Barrière P, Nicolas V, Kwaku Oduro L, (2008) Rapid Survey of the Small Mammals of Ajenjua Bepo and Mamang River Forest Reserves, Ghana. In: McCullough J, Hoke P, Naskrecki P, Yaw Osei-Owusu Y, editors. Rapid Biological Assessment of the Ajenjua Bepo and Mamang River Forest Reserves, Eastern Region, Ghana Arlington Conservation International pp. 54-57.
    • (2008) Rapid Biological Assessment of the Ajenjua Bepo and Mamang River Forest Reserves, Eastern Region, Ghana , pp. 54-57
    • Barrière, P.1    Nicolas, V.2    Kwaku Oduro, L.3
  • 29
    • 0000026233 scopus 로고
    • Les rongeurs myomorphes forestiers du nord-est du Gabon: structure du peuplement, démographie, domaines vitaux
    • Duplantier JM, (1989) Les rongeurs myomorphes forestiers du nord-est du Gabon: structure du peuplement, démographie, domaines vitaux. Rev Ecol Terre Vie 44: 329-346.
    • (1989) Rev Ecol Terre Vie , vol.44 , pp. 329-346
    • Duplantier, J.M.1
  • 30
    • 0042193300 scopus 로고    scopus 로고
    • Seasonal variations in population and community structure of small rodents in a tropical forest of Gabon
    • Nicolas V, Colyn M, (2003) Seasonal variations in population and community structure of small rodents in a tropical forest of Gabon. Can J Zool 81: 1034-1046.
    • (2003) Can J Zool , vol.81 , pp. 1034-1046
    • Nicolas, V.1    Colyn, M.2
  • 31
    • 0035079812 scopus 로고    scopus 로고
    • Species richness and abundance of small mammals inside and outside an African national park
    • Caro TM, (2001) Species richness and abundance of small mammals inside and outside an African national park. Biol Conserv 98: 251-257.
    • (2001) Biol Conserv , vol.98 , pp. 251-257
    • Caro, T.M.1
  • 32
    • 73449090513 scopus 로고    scopus 로고
    • Spatial distribution of commensal rodents in regions with high and low Lassa fever prevalence in Guinea
    • Fichet-Calvet E, Koulémou S, Koivogui L, Soropogui B, Sylla O, et al. (2005) Spatial distribution of commensal rodents in regions with high and low Lassa fever prevalence in Guinea. Belg J Zool 135 (Supplement) pp. 63-67.
    • (2005) Belg J Zool , vol.135 , Issue.SUPPL. , pp. 63-67
    • Fichet-Calvet, E.1    Koulémou, S.2    Koivogui, L.3    Soropogui, B.4    Sylla, O.5
  • 33
    • 77950841873 scopus 로고    scopus 로고
    • Diversity and dynamics in a community of small mammals in coastal guinea, West Africa
    • Fichet-Calvet E, Lecompte E, Veyrunes F, Barrière P, Nicolas V, et al. (2009) Diversity and dynamics in a community of small mammals in coastal guinea, West Africa. Belg J Zool 139: 93-102.
    • (2009) Belg J Zool , vol.139 , pp. 93-102
    • Fichet-Calvet, E.1    Lecompte, E.2    Veyrunes, F.3    Barrière, P.4    Nicolas, V.5
  • 35
    • 6944255373 scopus 로고    scopus 로고
    • Ten species in one: DNA barcoding reveals cryptic species in the neotropical skipper butterfly Astraptes fulgerator
    • Hebert PD, Penton EH, Burns JM, Janzen DH, Hallwachs W, (2004) Ten species in one: DNA barcoding reveals cryptic species in the neotropical skipper butterfly Astraptes fulgerator. Proc Natl Acad Sci U S A 101: 14812-14817.
    • (2004) Proc Natl Acad Sci U S A , vol.101 , pp. 14812-14817
    • Hebert, P.D.1    Penton, E.H.2    Burns, J.M.3    Janzen, D.H.4    Hallwachs, W.5
  • 37
    • 22744449938 scopus 로고    scopus 로고
    • Identifying spiders through DNA barcodes
    • Barrett DH, Hebert PDN, (2005) Identifying spiders through DNA barcodes. Can J Zool 83: 481-491.
    • (2005) Can J Zool , vol.83 , pp. 481-491
    • Barrett, D.H.1    Hebert, P.D.N.2
  • 38
    • 33845668492 scopus 로고    scopus 로고
    • Identifying Canadian mosquito species through DNA barcodes
    • Cywinska A, Hunter FF, Hebert PD, (2006) Identifying Canadian mosquito species through DNA barcodes. Med Vet Entomol 20: 413-424.
    • (2006) Med Vet Entomol , vol.20 , pp. 413-424
    • Cywinska, A.1    Hunter, F.F.2    Hebert, P.D.3
  • 40
    • 33847368554 scopus 로고    scopus 로고
    • DNA barcoding of Neotropical bats: species identification and discovery within Guyana
    • Clare E, Lim BK, Engstrom MD, Eger JD, Hebert PDN, (2006) DNA barcoding of Neotropical bats: species identification and discovery within Guyana. Mol Ecol Notes 7: 184-190.
    • (2006) Mol Ecol Notes , vol.7 , pp. 184-190
    • Clare, E.1    Lim, B.K.2    Engstrom, M.D.3    Eger, J.D.4    Hebert, P.D.N.5
  • 42
    • 77953629995 scopus 로고    scopus 로고
    • Revisiting the taxonomy of the Rattini tribe: a phylogeny-based delimitation of species boundaries
    • Pages M, Chaval Y, Herbreteau V, Waengsothorn S, Cosson JF, et al. (2010) Revisiting the taxonomy of the Rattini tribe: a phylogeny-based delimitation of species boundaries. BMC Evol Biol 10: 184.
    • (2010) BMC Evol Biol , vol.10 , pp. 184
    • Pages, M.1    Chaval, Y.2    Herbreteau, V.3    Waengsothorn, S.4    Cosson, J.F.5
  • 43
    • 77958616382 scopus 로고    scopus 로고
    • The role of DNA barcodes in understanding and conservation of mammal diversity in southeast Asia
    • Francis CM, Borisenko AV, Ivanova NV, Eger JL, Lim BK, et al. (2010) The role of DNA barcodes in understanding and conservation of mammal diversity in southeast Asia. PLoS One 5: e12575.
    • (2010) PLoS One , vol.5
    • Francis, C.M.1    Borisenko, A.V.2    Ivanova, N.V.3    Eger, J.L.4    Lim, B.K.5
  • 44
    • 79960760224 scopus 로고    scopus 로고
    • Neotropical bats: estimating species diversity with DNA barcodes
    • Clare EL, Lim BK, Fenton MB, Hebert PD, (2011) Neotropical bats: estimating species diversity with DNA barcodes. PLoS One 6: e22648.
    • (2011) PLoS One , vol.6
    • Clare, E.L.1    Lim, B.K.2    Fenton, M.B.3    Hebert, P.D.4
  • 45
    • 50549092313 scopus 로고    scopus 로고
    • Four years of DNA barcoding: current advances and prospects
    • Frezal L, Leblois R, (2008) Four years of DNA barcoding: current advances and prospects. Infection Genetics and Evolution 8: 727-736.
    • (2008) Infection Genetics and Evolution , vol.8 , pp. 727-736
    • Frezal, L.1    Leblois, R.2
  • 46
    • 0035205972 scopus 로고    scopus 로고
    • A test of the genetic species concept: cytochrome-b sequences and mammals
    • Bradley RD, Baker A, (2001) A test of the genetic species concept: cytochrome-b sequences and mammals. J Mammal 82: 960-973.
    • (2001) J Mammal , vol.82 , pp. 960-973
    • Bradley, R.D.1    Baker, A.2
  • 47
    • 78649784303 scopus 로고    scopus 로고
    • Reconstructing mammalian phylogenies: a detailed comparison of the cytochrome B and cytochrome oxidase subunit I mitochondrial genes
    • Tobe SS, Kitchener AC, Linacre AM, (2010) Reconstructing mammalian phylogenies: a detailed comparison of the cytochrome B and cytochrome oxidase subunit I mitochondrial genes. PLoS One 5: e14156.
    • (2010) PLoS One , vol.5
    • Tobe, S.S.1    Kitchener, A.C.2    Linacre, A.M.3
  • 48
    • 0035035545 scopus 로고    scopus 로고
    • Molecular phylogeny of Myomys/Stenocephalemys complex and its relationships with related African genera
    • Fadda C, Corti M, Verheyen E, (2001) Molecular phylogeny of Myomys/Stenocephalemys complex and its relationships with related African genera. Biochem Syst Ecol 29: 585-596.
    • (2001) Biochem Syst Ecol , vol.29 , pp. 585-596
    • Fadda, C.1    Corti, M.2    Verheyen, E.3
  • 49
    • 78149421266 scopus 로고    scopus 로고
    • Plio-Pleistocene history of West African Sudanian savanna and the phylogeography of the Praomys daltoni complex (Rodentia): the environment/geography/genetic interplay
    • Bryja J, Granjon L, Dobigny G, Patzenhauerova H, Konecny A, et al. (2010) Plio-Pleistocene history of West African Sudanian savanna and the phylogeography of the Praomys daltoni complex (Rodentia): the environment/geography/genetic interplay. Mol Ecol 19: 4783-4799.
    • (2010) Mol Ecol , vol.19 , pp. 4783-4799
    • Bryja, J.1    Granjon, L.2    Dobigny, G.3    Patzenhauerova, H.4    Konecny, A.5
  • 50
    • 38849131970 scopus 로고    scopus 로고
    • Phylogeography of a Sahelian rodent species Mastomys huberti: a Plio-Pleistocene story of emergence and colonization of humid habitats
    • Mouline K, Granjon L, Galan M, Tatard C, Abdoullaye D, et al. (2008) Phylogeography of a Sahelian rodent species Mastomys huberti: a Plio-Pleistocene story of emergence and colonization of humid habitats. Mol Ecol 17: 1036-1053.
    • (2008) Mol Ecol , vol.17 , pp. 1036-1053
    • Mouline, K.1    Granjon, L.2    Galan, M.3    Tatard, C.4    Abdoullaye, D.5
  • 51
    • 56549121671 scopus 로고    scopus 로고
    • Comparative phylogeography of two sibling species of forest-dwelling rodent (Praomys rostratus and P. tullbergi) in West Africa: different reactions to past forest fragmentation
    • Nicolas V, Bryja J, Akpatou B, Konecny A, Lecompte E, et al. (2008) Comparative phylogeography of two sibling species of forest-dwelling rodent (Praomys rostratus and P. tullbergi) in West Africa: different reactions to past forest fragmentation. Mol Ecol 17: 5118-5134.
    • (2008) Mol Ecol , vol.17 , pp. 5118-5134
    • Nicolas, V.1    Bryja, J.2    Akpatou, B.3    Konecny, A.4    Lecompte, E.5
  • 52
    • 78650013810 scopus 로고    scopus 로고
    • The roles of rivers and Pleistocene refugia in shaping genetic diversity in Praomys misonnei in tropical Africa
    • Nicolas V, Missoup AD, Denys C, Kerbis Peterhans J, Katuala P, et al. (2011) The roles of rivers and Pleistocene refugia in shaping genetic diversity in Praomys misonnei in tropical Africa. J Biogeogr 38: 191-207.
    • (2011) J Biogeogr , vol.38 , pp. 191-207
    • Nicolas, V.1    Missoup, A.D.2    Denys, C.3    Kerbis Peterhans, J.4    Katuala, P.5
  • 53
    • 69449085824 scopus 로고    scopus 로고
    • Phylogeography of the Guinea multimammate mouse (Mastomys erythroleucus): a case study for Sahelian species in West Africa
    • Brouat C, Tatard C, Bâ K, Cosson JF, Dobigny G, et al. (2009) Phylogeography of the Guinea multimammate mouse (Mastomys erythroleucus): a case study for Sahelian species in West Africa. J Biogeogr 36: 2237-2250.
    • (2009) J Biogeogr , vol.36 , pp. 2237-2250
    • Brouat, C.1    Tatard, C.2    Bâ, K.3    Cosson, J.F.4    Dobigny, G.5
  • 54
    • 33748994285 scopus 로고    scopus 로고
    • Taxonomy: DNA barcodes: recent successes and future prospects
    • Dasmahapatra KK, Mallet J, (2006) Taxonomy: DNA barcodes: recent successes and future prospects. Heredity 97: 254-255.
    • (2006) Heredity , vol.97 , pp. 254-255
    • Dasmahapatra, K.K.1    Mallet, J.2
  • 55
    • 70749142653 scopus 로고    scopus 로고
    • DNA barcode analysis: a comparison of phylogenetic and statistical classification methods
    • Austerlitz F, David O, Schaeffer B, Bleakley K, Olteanu M, et al. (2009) DNA barcode analysis: a comparison of phylogenetic and statistical classification methods. BMC Bioinformatics 10 (Suppl 14): S10.
    • (2009) BMC Bioinformatics , vol.10 , Issue.SUPPL. 14
    • Austerlitz, F.1    David, O.2    Schaeffer, B.3    Bleakley, K.4    Olteanu, M.5
  • 56
    • 84871292917 scopus 로고    scopus 로고
    • Integrating DNA barcode data and taxonomic practice: Determination, discovery, and description
    • In Press
    • Goldstein PZ, Desalle R, Integrating DNA barcode data and taxonomic practice: Determination, discovery, and description. Bioessays (In Press).
    • Bioessays
    • Goldstein, P.Z.1    Desalle, R.2
  • 57
    • 72049107504 scopus 로고    scopus 로고
    • New Heuristic Methods for Joint Species Delimitation and Species Tree Inference
    • O'Meara BC, (2010) New Heuristic Methods for Joint Species Delimitation and Species Tree Inference. Syst Biol 59: 59-73.
    • (2010) Syst Biol , vol.59 , pp. 59-73
    • O'Meara, B.C.1
  • 58
    • 84859589467 scopus 로고    scopus 로고
    • ABGD, Automatic Barcode Gap Discovery for primary species delimitation
    • doi:10.1111/j.1365-294X.2011.05239.x
    • Puillandre N, Lambert A, Brouillet S, Achaz G, (2011) ABGD, Automatic Barcode Gap Discovery for primary species delimitation. Mol Ecol doi:10.1111/j.1365-294X.2011.05239.x.
    • (2011) Mol Ecol
    • Puillandre, N.1    Lambert, A.2    Brouillet, S.3    Achaz, G.4
  • 59
    • 29144473686 scopus 로고    scopus 로고
    • DNA barcoding: error rates based on comprehensive sampling
    • Meyer CP, Paulay G, (2005) DNA barcoding: error rates based on comprehensive sampling. PLoS Biol 3: e422.
    • (2005) PLoS Biol , vol.3
    • Meyer, C.P.1    Paulay, G.2
  • 60
    • 77958556127 scopus 로고    scopus 로고
    • A response to recent proposals for integrative taxonomy
    • Padial JM, De la Riva I, (2011) A response to recent proposals for integrative taxonomy. Biol J Linn Soc 101: 747-756.
    • (2011) Biol J Linn Soc , vol.101 , pp. 747-756
    • Padial, J.M.1    de la Riva, I.2
  • 62
    • 84871313833 scopus 로고    scopus 로고
    • The impact of the Congo River and its tributaries on the rodent genus Praomys: speciation origin or range expansion limit?
    • in press
    • Kennis J, Nicolas V, Hulselmans J, Katuala PGB, Wendelen W, et al. The impact of the Congo River and its tributaries on the rodent genus Praomys: speciation origin or range expansion limit? Zool J Linn Soc (in press).
    • Zool J Linn Soc
    • Kennis, J.1    Nicolas, V.2    Hulselmans, J.3    Katuala, P.G.B.4    Wendelen, W.5
  • 64
    • 0000278301 scopus 로고    scopus 로고
    • An assessment of the systematics of Arvicanthine rodents using mitochondrial DNA sequences: evolutionary and biogeographical implications
    • Ducroz JF, Volobouev V, Granjon L, (2001) An assessment of the systematics of Arvicanthine rodents using mitochondrial DNA sequences: evolutionary and biogeographical implications. J Mammal Evol 8: 173-206.
    • (2001) J Mammal Evol , vol.8 , pp. 173-206
    • Ducroz, J.F.1    Volobouev, V.2    Granjon, L.3
  • 65
    • 0003410015 scopus 로고
    • The Simple Fool's Guide to PCR
    • Honolulu, University of Hawaii Press
    • Palumbi SR, Martin A, Romano S, McMillan WO, Stice L, et al. (1991) The Simple Fool's Guide to PCR. Honolulu University of Hawaii Press.
    • (1991)
    • Palumbi, S.R.1    Martin, A.2    Romano, S.3    McMillan, W.O.4    Stice, L.5
  • 66
    • 0034903261 scopus 로고    scopus 로고
    • Phylogeny and evolution of African shrews (Mammalia: Soricidae) inferred from 16s rRNA sequences
    • Quérouil S, Hutterer R, Barrière P, Colyn M, Peterhans JCK, et al. (2001) Phylogeny and evolution of African shrews (Mammalia: Soricidae) inferred from 16s rRNA sequences. Mol Phylogenet Evol 20: 185-195.
    • (2001) Mol Phylogenet Evol , vol.20 , pp. 185-195
    • Quérouil, S.1    Hutterer, R.2    Barrière, P.3    Colyn, M.4    Peterhans, J.C.K.5
  • 67
    • 0027968068 scopus 로고
    • CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-speciWc gap penalties, and weight matrix choice
    • Thompson JD, Higgins DG, Gibson TJ, (1994) CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-speciWc gap penalties, and weight matrix choice. Nucleic Acids Res 22: 4673-4680.
    • (1994) Nucleic Acids Res , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 68
    • 0019296687 scopus 로고
    • A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences
    • Kimura M, (1980) A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16: 111-120.
    • (1980) J Mol Evol , vol.16 , pp. 111-120
    • Kimura, M.1
  • 69
    • 0004248459 scopus 로고    scopus 로고
    • PAUP: phylogenetic analysis using parsimony
    • Version 4b10 ed. Washington DC, Smithsonian Institution
    • Swofford D, (2000) PAUP: phylogenetic analysis using parsimony. Version 4b10 ed. Washington DC Smithsonian Institution.
    • (2000)
    • Swofford, D.1
  • 70
    • 0023375195 scopus 로고
    • The neighbor-joining method: a new method for reconstructing phylogenetic trees
    • Saitou N, Nei M, (1987) The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4: 406-425.
    • (1987) Mol Biol Evol , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 71
    • 34447620474 scopus 로고    scopus 로고
    • Delimiting species without monophyletic gene trees
    • Knowles LL, Carstens BC, (2007) Delimiting species without monophyletic gene trees. Syst Biol 56: 887-895.
    • (2007) Syst Biol , vol.56 , pp. 887-895
    • Knowles, L.L.1    Carstens, B.C.2
  • 72
    • 79959269164 scopus 로고    scopus 로고
    • Principles and Theory for Data Mining and Machine Learning
    • New York Inc, Springer-Verlag
    • Clarke B, Fokoué E, Zhang HH, (2009) Principles and Theory for Data Mining and Machine Learning.Springer Series in Statistics. New York Inc Springer-Verlag.
    • (2009) Springer Series in Statistics
    • Clarke, B.1    Fokoué, E.2    Zhang, H.H.3
  • 73
    • 0003909532 scopus 로고
    • Discriminatory analysis, nonparametric discrimination: Consistency properties
    • Randolph Field, Texas, USAF School of Aviation Medicine
    • Fix E, Hodges JL, (1951) Discriminatory analysis, nonparametric discrimination: Consistency properties. Randolph Field, Texas USAF School of Aviation Medicine.
    • (1951)
    • Fix, E.1    Hodges, J.L.2
  • 75
    • 0035478854 scopus 로고    scopus 로고
    • Random forests
    • Breiman L, (2001) Random forests. Mach Learn 45: 5-32.
    • (2001) Mach Learn , vol.45 , pp. 5-32
    • Breiman, L.1
  • 77
    • 0002788119 scopus 로고    scopus 로고
    • The general lineage concept of species, species criteria and the process of speciation. A conceptual unification and terminological recommendations
    • In: Howard DJ, Berlocher SH, editors, Oxford, Oxford University Press
    • de Queiroz K, (1998) The general lineage concept of species, species criteria and the process of speciation. A conceptual unification and terminological recommendations. In: Howard DJ, Berlocher SH, editors. Endless forms: species and speciation Oxford Oxford University Press pp. 57-75.
    • (1998) Endless Forms: Species and Speciation , pp. 57-75
    • de Queiroz, K.1
  • 78
    • 0003574887 scopus 로고    scopus 로고
    • Phylogeography: the history and formation of species
    • Cambridge, Harvard University press
    • Avise JC, (2000) Phylogeography: the history and formation of species. Cambridge Harvard University press.
    • (2000)
    • Avise, J.C.1
  • 79
    • 69149084832 scopus 로고    scopus 로고
    • A DNA barcode for land plants
    • Group CPW
    • Group CPW (2009) A DNA barcode for land plants. Proc Natl Acad Sci U S A 106: 12794-12797.
    • (2009) Proc Natl Acad Sci U S A , vol.106 , pp. 12794-12797
  • 80
    • 60349111930 scopus 로고    scopus 로고
    • Selecting barcoding loci for plants: evaluation of seven candidate loci with species-level sampling in three divergent groups of land plants
    • Hollingsworth ML, Clarck AA, Forrest LL, Richardson J, Pennington RT, et al. (2009) Selecting barcoding loci for plants: evaluation of seven candidate loci with species-level sampling in three divergent groups of land plants. Mol Ecol Res 9: 439-457.
    • (2009) Mol Ecol Res , vol.9 , pp. 439-457
    • Hollingsworth, M.L.1    Clarck, A.A.2    Forrest, L.L.3    Richardson, J.4    Pennington, R.T.5
  • 81
    • 69449098823 scopus 로고    scopus 로고
    • Phylogeography of spiny mice (genus Acomys, Rodentia: Muridae), from the Southwestern margin of the Sahara, with taxonomic implications
    • Nicolas V, Granjon L, Duplantier JM, Cruaud C, Dobigny G, (2009) Phylogeography of spiny mice (genus Acomys, Rodentia: Muridae), from the Southwestern margin of the Sahara, with taxonomic implications. Biol J Linn Soc 98: 29-46.
    • (2009) Biol J Linn Soc , vol.98 , pp. 29-46
    • Nicolas, V.1    Granjon, L.2    Duplantier, J.M.3    Cruaud, C.4    Dobigny, G.5
  • 82
    • 53849123654 scopus 로고    scopus 로고
    • Phylogeographical structure and regional history of Lemniscomys striatus (Rodentia: Muridae) in tropical Africa
    • Nicolas V, Mboumba JF, Verheyen E, Denys C, Lecompte E, et al. (2008) Phylogeographical structure and regional history of Lemniscomys striatus (Rodentia: Muridae) in tropical Africa. J Biogeogr 35: 2072-2089.
    • (2008) J Biogeogr , vol.35 , pp. 2072-2089
    • Nicolas, V.1    Mboumba, J.F.2    Verheyen, E.3    Denys, C.4    Lecompte, E.5
  • 83
    • 33847310250 scopus 로고    scopus 로고
    • Phylogenetics of the woodrat genus Neotoma (Rodentia: Muridae): implications for the evolution of phenotypic variation in male external genitalia
    • Matocq MD, Shurtliff QR, Feldman CR, (2007) Phylogenetics of the woodrat genus Neotoma (Rodentia: Muridae): implications for the evolution of phenotypic variation in male external genitalia. Mol Phylogenet Evol 42: 637-652.
    • (2007) Mol Phylogenet Evol , vol.42 , pp. 637-652
    • Matocq, M.D.1    Shurtliff, Q.R.2    Feldman, C.R.3
  • 84
    • 33847690236 scopus 로고    scopus 로고
    • Evolutionary systematics in African gerbilline rodents of the genus Gerbilliscus: inference from mitochondrial genes
    • Colangelo P, Granjon L, Taylor PJ, Corti M, (2007) Evolutionary systematics in African gerbilline rodents of the genus Gerbilliscus: inference from mitochondrial genes. Mol Phylogenet Evol 42: 797-806.
    • (2007) Mol Phylogenet Evol , vol.42 , pp. 797-806
    • Colangelo, P.1    Granjon, L.2    Taylor, P.J.3    Corti, M.4
  • 85
    • 78149448601 scopus 로고    scopus 로고
    • Exploring the use of cytochrome oxidase c subunit 1 (COI) for DNA barcoding of free-living marine nematodes
    • Derycke S, Vanaverbeke J, Rigaux A, Backeljau T, Moens T, (2010) Exploring the use of cytochrome oxidase c subunit 1 (COI) for DNA barcoding of free-living marine nematodes. PLoS One 5: e13716.
    • (2010) PLoS One , vol.5
    • Derycke, S.1    Vanaverbeke, J.2    Rigaux, A.3    Backeljau, T.4    Moens, T.5
  • 86
    • 8844224149 scopus 로고    scopus 로고
    • DNA barcoding: promise and pitfalls
    • Moritz C, Cicero C, (2004) DNA barcoding: promise and pitfalls. PLoS Biol 2: e354.
    • (2004) PLoS Biol , vol.2
    • Moritz, C.1    Cicero, C.2
  • 88
    • 69149084832 scopus 로고    scopus 로고
    • A DNA barcode for land plants
    • CBOL PWG, (2009) A DNA barcode for land plants. Proc Natl Acad Sci U S A 106: 12794-12797.
    • (2009) Proc Natl Acad Sci U S A , vol.106 , pp. 12794-12797
    • Cbol, P.W.G.1
  • 89
    • 79960845140 scopus 로고    scopus 로고
    • DNA barcoding of African fruit bats (Mammalia, Pteropodidae). The mitochondrial genome does not provide a reliable discrimination between Epomophorus gambianus and Micropteropus pusillus
    • Nesi N, Nakouné E, Cruaud C, Hassanin A, (2011) DNA barcoding of African fruit bats (Mammalia, Pteropodidae). The mitochondrial genome does not provide a reliable discrimination between Epomophorus gambianus and Micropteropus pusillus. C R Biol 334: 544-554.
    • (2011) C R Biol , vol.334 , pp. 544-554
    • Nesi, N.1    Nakouné, E.2    Cruaud, C.3    Hassanin, A.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.