Molecular investigations of chikungunya virus during outbreaks in Orissa, Eastern India in 2010

Infection, Genetics and Evolution

Volumn 12, Issue 5, 2012, Pages 1094-1101

  Das, Biswadeep ^a   Sahu, Abhipsa ^a   Das, Mumani ^a   Patra, Aparna ^a   Dwibedi, Bhagirathi ^a   Kar, Santanu K ^a   Hazra, Rupenangshu K ^a  

^a REGIONAL MEDICAL RESEARCH CENTRE ICMR   (India)

Author keywords

Aedes albopictus; Chikungunya; India; Orissa; Phylogenetic analysis; RT PCR

Indexed keywords

GLYCOPROTEIN E1; GLYCOPROTEIN E2; IMMUNOGLOBULIN M ANTIBODY;

ADOLESCENT; ADULT; AEDES; AEDES AEGYPTI; AEDES ALBOPICTUS; AEDES EDWARDSII; AEDES VITTATUS; AGE DISTRIBUTION; AGED; ARTHRALGIA; ARTICLE; CHIKUNGUNYA; CHIKUNGUNYA ALPHAVIRUS; CHILD; CONTROLLED STUDY; CULEX; DISEASE CARRIER; DISEASE DURATION; DISEASE SEVERITY; EPIDEMIC; FEMALE; GENETIC ANALYSIS; GENETIC EPISTASIS; GENOTYPE; GEOGRAPHIC DISTRIBUTION; HUMAN; HUMAN CELL; INDIA; MAJOR CLINICAL STUDY; MALE; MAXIMUM LIKELIHOOD METHOD; MIDGUT; MOLECULAR DIAGNOSIS; MORBIDITY; MOSQUITO; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; PRESCHOOL CHILD; PRIORITY JOURNAL; SCHOOL CHILD; SEASHORE; SEROLOGY; VIRUS INFECTIVITY; VIRUS ISOLATION; VIRUS MUTATION; VIRUS STRAIN; VIRUS TRANSMISSION; ZOOLOGY;

ADOLESCENT; ADULT; AEDES; AGED; AGED, 80 AND OVER; ALPHAVIRUS INFECTIONS; ANIMALS; CHIKUNGUNYA VIRUS; CHILD; CHILD, PRESCHOOL; CULEX; DISEASE OUTBREAKS; FEMALE; HUMANS; INDIA; INSECT VECTORS; LARVA; MALE; MIDDLE AGED; PHYLOGENY; POLYMERASE CHAIN REACTION; RNA, VIRAL; VIRAL ENVELOPE PROTEINS;

AEDES AEGYPTI; AEDES ALBOPICTUS; AEDES VITTATUS; ALPHAVIRUS; CHIKUNGUNYA VIRUS;

EID: 84860365832     PISSN: 15671348     EISSN: 15677257     Source Type: Journal    
DOI: 10.1016/j.meegid.2012.03.012     Document Type: Article

References (41)

1. AbuBakar S., Sam I.C., Wong P.F., MatRahim N., Hooi P.S., Roslan N. Re-emergence of endemic chikungunya, Malayasia. Emerg. Infect. Dis. 2007, 147-149.
2. Arankalle V.A., Shrivastava S., Cherian S., Gunjikar R.S., Walimbe A.M., Jadhav S.M., Sudeep A.B., Mishra A.C. Genetic divergence of Chikungunya viruses in India (1963-2006) with special reference to the 2005-2006 explosive epidemic. J. Gen. Virol. 2007, 88:1967-1976.
3. Barraud, P.J., 1934. The fauna of British India, Including Ceylon and Burma. Diptera, V, family Culicidae, tribe Megharini and Culicini. Taylor and Francis, London, pp. 217-246.
4. Biggerstaff, B.J., 2009. PooledInfRate, Version 4.0: a Microsoft® Office Excel© Add-In to compute prevalence estimates from pooled samples. Centers for Disease Control and Prevention, Fort Collins, CO, USA. http://www.cdc.gov/ncidod/dvbid/westnile/software.htm.
5. Brooks, G.F., Butel, J.S., Morse, S.A., 2004. Human arboviral infections. In: Jawetz, Melnick, Adelberg's (Eds.), Medical Microbiology. 23rd ed., Mc Graw Hill, Singapore, pp. 514-524.
6. Carletti F., Bordi L., Chiappini R., Ippolito G., Sciarrone M.R., Capobianchi M.R., Caro A.D., Castilletti C. Short report: rapid detection and quantification of chikungunya virus by a one-step reverse transcription-polymerase chain reaction real-time assay. Am. J. Trop. Med. Hyg. 2007, 77:521-524.
7. Cui J., Gao M., Ren X. Phylogeny and homologous recombination in Chikungunya viruses. Infect. Genet. Evol. 2011, 8:1957-1963.
8. Das B., Swain S., Patra A., Das M., Tripathy H.K., Mohapatra N., Kar S.K., Hazra R.K. Development and evaluation of a single step multiplex PCR to differentiate the aquatic stages of morphological similar Aedes (Subgenus: Stegomyia) species. Trop. Med. Int. Health. 2012, 17:235-243.
9. Dash P.K., Parida M.M., Santhosh S.R., Verma S.K., Tripathi N.K., Ambuj S.P., Gupta N., Chaudhary M., Pradeep Babu J., Lakshmi V., Mamidi N., Subhalaxmi M.V.S., Lakshmana Rao P.V., Sekhar K. East Central South African genotype as the causative agent in reemergence of Chikungunya outbreak in India. Vector Borne Zoonotic Dis. 2007, 7:519-528.
10. Dwibedi B., Mahapatra N., Beuria M.K., Kerketta A.S., Sabat J., Kar S.K., Rao E.V., Hazra R.K., Parida S.K., Marai N.S. Emergence of Chikungunya virus infection in Orissa, India. Vector Borne Zoontic Dis. 2010, 10:347-354.
11. Dwibedi B., Sabat J., Mahapatra N., Kar S.K., Kerketta A.S., Hazra R.K., Parida S.K., Marai N.S., Beuria M.K. Rapid spread of Chikungunya virus infection in Orissa: India. Indian J. Med. Res. 2011, 133:316-321.
12. Enserink M. Chikungunya: no longer a third world disease. Science 2007, 318:1860-1861.
13. Hasebe F., Parquet M.C., Pandey B.D., Mathenge E.G., Morita K., Balasubramaniam B., Saat Z., Yusop A., Sinniah M., Natkunam S., Igarashi A. Combined detection and genotyping of chikungunya virus by a specific reverse transcriptase-polymerase chain reaction. J. Med. Virol. 2002, 67:370-374.
14. Hundekar S.L., Thakare J.P., Gokhale M.D., Barde P.V., Argade S.V., Mourya D.T. Development of monoclonal antibody based antigen capture ELISA to detectChikungunya virusantigen in mosquitoes. Ind. J. Med. Res. 2002, 115:144-148.
15. Innis B.L., Nisalak A., Nimmannitya S., Kusalerdchariya S., Chongswasdi V., Suntayakorn S., Puttisri P., Hoke C.H. An enzyme-linked immunosorbent assay to characterize dengue infections where dengue and Japanese encephalitis co-circulate. Am. J. Trop. Med. Hyg. 1989, 40:418-427.
16. Josseran L., Paquet C., Zehgnoun A., Caillere N., Le Tertre A., Solet J.L., Ledrans M. Chikungunya disease outbreak, Reunion Island. Emerg. Infect. Dis. 2006, 12:1994-1995.
17. Jupp, P.G., McIntosh, B.M., 1988. Chikungunya disease. In: Monath T.P., (Ed.), The Arboviruses: Epidemiology and Ecology, CRC Press, Boca Raton (Florida), pp. 137-157.
18. Kariuki N.M., Nderitu L., Ledermann J.P., Ndirangu A., Logue C.H., Kelly C.H., Sang R., Sergon K., Breiman R., Powers A.M. Tracking epidemic Chikungunya virus into the Indian Ocean from East Africa. J. Gen. Virol. 2008, 89:2754-2760.
19. Kumar N.P., Joseph R., Kamaraj T., Jambulingam P. A226V mutation in virus during the 2007 chikungunya outbreak in Kerala, India. J. Gen. Virol. 2008, 89:1945-1948.
20. Mavalankar D., Shastri P., Bandyopadhyay T., Parmar J., Ramani K.V. Increased mortality rate associated with chikungunya epidemic, Ahmedabad, India. Emerg. Infect. Dis. 2008, 14:412-415.
21. Niyas K.P., Abraham R., Unnikrishnan R.N., Mathew T., Nair S., Manakkadan A., Issac A., Sreekumar E. Molecular characterization of Chikungunya virus isolates from clinical samples and adult Aedes albopictus mosquitoes emerged from larvae from Kerala, South India. Virol. J. 2010, 7:189.
22. NVBDCP, 2009. Epidemiological profile of chikungunya fever in the country. (prov.). New Delhi: National Vector Borne Disease Control Programme, http://www.nvbdcp.gov.in/Doc/chikun-update07.pdf.
23. Pastorino B., Bessaud M., Granadam M., Murri S., Tolou H.J., Peyrefitte C.N. Development of a TaqMan RT-PCR assay without RNA extraction step for the detection and quantification of African Chikungunya viruses. J. Virol. Methods 2005, 124:65-71.
24. Pavri K.M. Disappearance of Chikungunya virus from India and South East Asia. Trans. R. Soc. Trop. Med. Hyg. 1986, 80:491.
25. Pfeffer M., Linssen B., Parke M.D., Kinney R.M. Specific detection of Chikungunya virus using a RT-PCR/nested PCR combination. J. Vet. Med. B. Infect. Dis. Vet. Public Health 2002, 49:49-54.
26. Powers A.M., Logue C. Changing patterns of chikungunya virus: re-emergence of a zoonotic arbovirus. J. Gen. Virol. 2007, 88:2363-2377.
27. Rao T.R. Recent epidemics caused by Chikungunya virus in India, 1963-1965. Sci. Cult. 1966, 32:215-220.
28. Schuffenecker I., Iteman I., Michault A., Murri S., Frangeul L., Vaney M., Lavenir R., Pardigon N., Reynes J.M., Francois P., Leon B., Diancourt L., Michel S., Duquerroy S., Guigan G., Frankiel M., Brehin A., Cubito N., Despres P., Kunst F., Rey F.A., Zeller H., Brisse S. Genome microevolution of chikungunya viruses causing the Indian Ocean outbreak. PLoS Med. 2006, 3:e263.
29. Shah K.V., Gibbs C.J., Banerjee G. Virological investigation of the epidemic of haemorrhagic fever in Calcutta: isolation of three strains of chikungunya virus. Indian J. Med. Res. 1964, 52:676-683.
30. Strauss, E.G., Strauss, J.H., 1986. Structure and replication of the alphavirus genome. In: Schlesinger S, Schlesinger M.J. (Eds.), The Togaviridae and Flaviviridae, Plenum Press, New York, pp. 35-90.
31. Strauss J.H., Strauss E.G. The alphaviruses: gene expression, replication, and evolution. Microbiol. Mol. Biol. Rev. 1994, 58:491-562.
32. Tamura K., Peterson D., Peterson N., Stecher G., Nei M., Kumar S. MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol. Biol. Evol. 2011, 28:2731-2739.
33. Tsetsarkin K.A., Weaver S.C. Sequential adaptive mutations enhance efficient vector switching by chikungunya virus and its epidemic emergence. PLoS Pathog. 2011, 12:e1002412.
34. Tsetsarkin K.A., Vanlandingham D.L., McGee C.E., Higgs S. A single mutation in chikungunya virus affects vector specificity and epidemic potential. PLoS Pathog. 2007, 3:e201.
35. Tsetsarkin K.A., McGee C.E., Volk S.M., Vanlandingham D.L., Weaver S.C., Higgs S. Epistatic roles of E2 glycoprotein mutations in adaption of chikungunya virus to Aedes albopictus and A aegypti mosquitoes. PLoS One 2009, 4:e6835.
36. Tsetsarkin K.A., Chen R., Leal G., Forrester N., Higgs S., Huang J., Weaver S.C. Chikungunya virus emergence is constrained in Asia by lineage-specific adaptive landscapes. Proc. Natl. Acad. Sci. USA 2011, 108:7872-7877.
37. Vazeille M., Moutailler S., Coudrier D., Rousseaux C., Khun H., Huerre M., Thiria J., Dehecq J.S., Fontenille D., Schuffenecker I., Despres P., Failloux A.B. Two chikungunya isolates from the outbreak of La Reunion (Indian Ocean) exhibit different patterns of infection in the mosquito, Aedes albopictus. PLoS One 2007, 2:e1168.
38. Volk S.M., Chen R., Tsetsarkin K.A., Adams A.P., Garcia T.I., Sall A.A., Nasar F., Schuh A.J., Holmes E.C., Higgs S., Maharaj P.D., Brault A.C., Weaver S.C. Genome-scale phylogenetic analyses of chikungunya virus reveal independent emergences of recent epidemics and various evolutionary rates. J. Virol. 2010, 84:6497-6504.
39. Voss J.E., Vaney M.C., Duquerroy S., Vonrhein C., Girard-Blanc C., Crublet E., Thompson A., Bricogne G., Rey F.A. Glycoprotein organization of Chikungunya virus particles revealed by X-ray crystallography. Nature 2010, 468:709-712.
40. WHO, 1975. Manual on Practical Entomology In Malaria Part-II, Methods Tech. Offset Publication 13. Geneva: World Health Organization. 1-186. http://www.whqlibdoc.who.int/ofset/WHO_OFFSET_13_(part2).pdf.
41. Yadav P., Shouche Y.S., Munot H.P., Mishra A.C., Mourya D.T. Genotyping of Chikungunya virus isolates from India during 1963-2000 by reverse transcription-polymerase chain reaction. Acta Virol. 2003, 47:125-127.