Profiling of linker histone variants in ovarian cancer

Frontiers in Bioscience

Volumn 17, Issue 2, 2012, Pages 396-406

  Medrzycki, Magdalena ^a   Zhang, Yunzhe ^a   McDonald, John F ^a   Fan, Yuhong ^a  

^a GEORGIA INSTITUTE OF TECHNOLOGY   (United States)

Author keywords

Clustering; Gene Expression Profiling; H1 Linker Histones; H1 Variants; Ovarian Cancer

Indexed keywords

EID: 84860296017     PISSN: 27686701     EISSN: 27686698     Source Type: Journal    
DOI: 10.2741/3934     Document Type: Article

References (66)

1. A Jemal, R Siegel, E Ward, Y Hao, J Xu, T Murray and M J Thun: Cancer statistics, 2008. CA Cancer J Clin 58, 71-96 (2008) (Pubitemid 351521864)
2. http://documents.cancer.org/acs/groups/cid/documents/webc ontent/003130-pdf.pdf. (2010)
3. C Balch, F Fang, D E Matei, T H Huang and K P Nephew: Minireview: epigenetic changes in ovarian cancer. Endocrinology 150, 4003-11 (2009)
4. M Widschwendter, G Jiang, C Woods, H M Muller, H Fiegl, G Goebel, C Marth, E Muller-Holzner, A G Zeimet, P W Laird and M Ehrlich: DNA hypomethylation and ovarian cancer biology. Cancer Res 64, 4472-80 (2004) (Pubitemid 38856918)
5. M J Kwon, S S Kim, Y L Choi, H S Jung, C Balch, S H Kim, Y S Song, V E Marquez, K P Nephew and Y K Shin: Derepression of CLDN3 and CLDN4 during ovarian tumorigenesis is associated with loss of repressive histone modifications. Carcinogenesis 31, 974-83 (2010)
6. K Q Cai, C Caslini, C D Capo-chichi, C Slater, E R Smith, H Wu, A J Klein-Szanto, A K Godwin and X X Xu: Loss of GATA4 and GATA6 expression specifies ovarian cancer histological subtypes and precedes neoplastic transformation of ovarian surface epithelia. PLoS One 4, e6454 (2009)
7. H Ozdag, A E Teschendorff, A A Ahmed, S J Hyland, C Blenkiron, L Bobrow, A Veerakumarasivam, G Burtt, T Subkhankulova, M J Arends, V P Collins, D Bowtell, T Kouzarides, J D Brenton and C Caldas: Differential expression of selected histone modifier genes in human solid cancers. BMC Genomics 7, 90 (2006)
8. A P Wolffe: Chromatin: Structure and Function. Academic Press, San Diego, CA, San Diego, CA (1998)
9. C L Woodcock, A I Skoultchi and Y Fan: Role of linker histone in chromatin structure and function: H1 stoichiometry and nucleosome repeat length. Chromosome Res 14, 17-25 (2006)
10. M Vignali and J L Workman: Location and function of linker histones. Nat Struct Biol 5, 1025-8. (1998) (Pubitemid 28546261)
11. X Shen and M A Gorovsky: Linker histone H1 regulates specific gene expression but not global transcription in vivo. Cell 86, 475-83. (1996) (Pubitemid 26272087)
12. Y Fan, T Nikitina, J Zhao, T J Fleury, R Bhattacharyya, E E Bouhassira, A Stein, C L Woodcock and A I Skoultchi: Histone H1 depletion in mammals alters global chromatin structure but causes specific changes in gene regulation. Cell 123, 1199-212 (2005) (Pubitemid 41821779)
13. P Bouvet, S Dimitrov and A P Wolffe: Specific regulation of Xenopus chromosomal 5S rRNA gene transcription in vivo by histone H1. Genes & development 8, 1147-59 (1994) (Pubitemid 24163443)
14. A Gunjan and D T Brown: Overproduction of histone H1 variants in vivo increases basal and induced activity of the mouse mammary tumor virus promoter. Nucleic Acids Res 27, 3355-63 (1999) (Pubitemid 29381330)
15. H Lee, R Habas and C Abate-Shen: MSX1 cooperates with histone H1b for inhibition of transcription and myogenesis. Science 304, 1675-8 (2004) (Pubitemid 38765860)
16. H L Lee and T K Archer: Prolonged glucocorticoid exposure dephosphorylates histone H1 and inactivates the MMTV promoter. Embo J 17, 1454-66 (1998) (Pubitemid 28105524)
17. O C Steinbach, A P Wolffe and R A Rupp: Somatic linker histones cause loss of mesodermal competence in Xenopus. Nature 389, 395-9 (1997) (Pubitemid 27415223)
18. S C Ushinsky, H Bussey, A A Ahmed, Y Wang, J Friesen, B A Williams and R K Storms: Histone H1 in Saccharomyces cerevisiae. Yeast 13, 151-61 (1997) (Pubitemid 27055824)
19. M Veron, Y Zou, Q Yu, X Bi, A Selmi, E Gilson and P A Defossez: Histone H1 of Saccharomyces cerevisiae inhibits transcriptional silencing. Genetics 173, 579-87 (2006) (Pubitemid 43945880)
20. K Kim, J Choi, K Heo, H Kim, D Levens, K Kohno, E M Johnson, H W Brock and W An: Isolation and characterization of a novel H1.2 complex that acts as a repressor of p53-mediated transcription. The Journal of biological chemistry 283, 9113-26 (2008)
21. N Happel and D Doenecke: Histone H1 and its isoforms: contribution to chromatin structure and function. Gene 431, 1-12 (2009)
22. R W Lennox and L H Cohen: The histone H1 complements of dividing and nondividing cells of the mouse. The Journal of biological chemistry 258, 262-8 (1983) (Pubitemid 13165827)
23. Z F Wang, A M Sirotkin, G M Buchold, A I Skoultchi and W F Marzluff: The mouse histone H1 genes: gene organization and differential regulation. J Mol Biol 271, 124-38 (1997) (Pubitemid 27338771)
24. S Rabini, K Franke, P Saftig, C Bode, D Doenecke, B Drabent: Spermatogenesis in mice is not affected by histone H1.1 deficiency. Exp Cell Res. 255, 114-124 (2000) (Pubitemid 30115294)
25. Y Fan and A I Skoultchi: Genetic analysis of H1 linker histone subtypes and their functions in mice. Methods Enzymol 377, 85-107 (2004) (Pubitemid 38166810)
26. Y Fan, A Sirotkin, R G Russell, J Ayala and A I Skoultchi: Individual somatic H1 subtypes are dispensable for mouse development even in mice lacking the H1(0) replacement subtype. Mol Cell Biol 21, 7933-43 (2001) (Pubitemid 33051786)
27. Y Fan, T Nikitina, E M Morin-Kensicki, J Zhao, T R Magnuson, C L Woodcock and A I Skoultchi: H1 linker histones are essential for mouse development and affect nucleosome spacing in vivo. Mol Cell Biol 23, 4559-72 (2003) (Pubitemid 36734746)
28. Y Fan, S A Braut, Q Lin, R H Singer and A I Skoultchi: Determination of transgenic loci by expression FISH. Genomics 71, 66-9 (2001) (Pubitemid 32097203)
29. Q Lin, A Inselman, X Han, H Xu, W Zhang, M A Handel, A Skoultchi: Reduction in linker histone levels are tolarated in developing spermatocyttes but cause changes in specific gene expression. J Biol Chem 279, 23525-23535 (2004) (Pubitemid 38685665)
30. T Yamamoto and M Horikoshi: Cloning of the cDNA encoding a novel subtype of histone H1. Gene 173, 281-5 (1996) (Pubitemid 26302477)
31. N Happel, E Schulze and D Doenecke: Characterisation of human histone H1x. Biol Chem 386, 541-51 (2005) (Pubitemid 41447575)
32. S Stoldt, D Wenzel, E Schulze, D Doenecke and N Happel: G1 phase-dependent nucleolar accumulation of human histone H1x. Biol Cell 99, 541-52 (2007) (Pubitemid 47543312)
33. H Takata, S Matsunaga, A Morimoto, R Ono-Maniwa, S Uchiyama and K Fukui: H1.X with different properties from other linker histones is required for mitotic progression. FEBS Lett 581, 3783-8 (2007) (Pubitemid 47102305)
34. J Warneboldt, F Haller, O Horstmann, B C Danner, L Fuzesi, D Doenecke and N Happel: Histone H1x is highly expressed in human neuroendocrine cells and tumours. BMC Cancer 8, 388 (2008)
35. J Zlatanova and D Doenecke: Histone H1 zero: a major player in cell differentiation? FASEB J 8, 1260-8 (1994)
36. M Tanaka, J D Hennebold, J Macfarlane and E Y Adashi: A mammalian oocyte-specific linker histone gene H1oo: homology with the genes for the oocyte-specific cleavage stage histone (cs-H1) of sea urchin and the B4/H1M histone of the frog. Development (Cambridge, England) 128, 655-64. (2001) (Pubitemid 32229243)
37. R W Lennox and L H Cohen: The alterations in H1 histone complement during mouse spermatogenesis and their significance for H1 subtype function. Developmental biology 103, 80-4 (1984)
38. W Yan, L Ma, K H Burns and M M Matzuk: HILS1 is a spermatid-specific linker histone H1-like protein implicated in chromatin remodeling during mammalian spermiogenesis. Proc Natl Acad Sci U S A 100, 10546-51 (2003) (Pubitemid 37071915)
39. I Martianov, S Brancorsini, R Catena, A Gansmuller, N Kotaja, M Parvinen, P Sassone-Corsi and I Davidson: Polar nuclear localization of H1T2, a histone H1 variant, required for spermatid elongation and DNA condensation during spermiogenesis. Proc Natl Acad Sci U S A 102, 2808-13 (2005) (Pubitemid 40299874)
40. M Becker, A Becker, F Miyara, Z Han, M Kihara, D T Brown, G L Hager, K Latham, E Y Adashi and T Misteli: Differential in vivo binding dynamics of somatic and oocytespecific linker histones in oocytes and during ES cell nuclear transfer. Mol Biol Cell 16, 3887-95 (2005) (Pubitemid 41077095)
41. D A Bell: Origins and molecular pathology of ovarian cancer. Mod Pathol 18 Suppl 2, S19-32 (2005) (Pubitemid 40188615)
42. C Gorka, M P Brocard, S Curtet and S Khochbin: Differential recognition of histone H10 by monoclonal antibodies during cell differentiation and the arrest of cell proliferation. The Journal of biological chemistry 273, 1208-15 (1998) (Pubitemid 28049223)
43. M B Eisen, P T Spellman, P O Brown and D Botstein: Cluster analysis and display of genome-wide expression patterns. Proc Natl Acad Sci U S A 95, 14863-8 (1998) (Pubitemid 29003722)
44. A Alonso, B Breuer, H Bouterfa and D Doenecke: Early increase in histone H1(0) mRNA during differentiation of F9 cells to parietal endoderm. EMBO J 7, 3003-8 (1988)
45. G H Cheng and A I Skoultchi: Rapid induction of polyadenylated H1 histone mRNAs in mouse erythroleukemia cells is regulated by c-myc. Mol Cell Biol 9, 2332-40 (1989) (Pubitemid 19148116)
46. C Q Zhu, M Pintilie, T John, D Strumpf, F A Shepherd, S D Der, I Jurisica and M S Tsao: Understanding prognostic gene expression signatures in lung cancer. Clin Lung Cancer 10, 331-40 (2009)
47. J Quackenbush: Microarray analysis and tumor classification. N Engl J Med 354, 2463-72 (2006) (Pubitemid 43855049)
48. A A Alizadeh, M B Eisen, R E Davis, C Ma, I S Lossos, A Rosenwald, J C Boldrick, H Sabet, T Tran, X Yu, J I Powell, L Yang, G E Marti, T Moore, J Hudson, Jr., L Lu, D B Lewis, R Tibshirani, G Sherlock, W C Chan, T C Greiner, D D Weisenburger, J O Armitage, R Warnke, R Levy, W Wilson, M R Grever, J C Byrd, D Botstein, P O Brown and L M Staudt: Distinct types of diffuse large B-cell lymphoma identified by gene expression profiling. Nature 403, 503-11 (2000) (Pubitemid 30082188)
49. R A Weinberg: The Biology of Cancer. Garland Science, Taylor & Francis Group, LLC., New York (2007)
50. U M Bond, T A Yario and J A Steitz: Multiple processing-defective mutations in a mammalian histone pre-mRNA are suppressed by compensatory changes in U7 RNA both in vivo and in vitro. Genes & development 5, 1709-22 (1991) (Pubitemid 21906074)
51. J R Pehrson and R D Cole: Histone H1 subfractions and H10 turnover at different rates in nondividing cells. Biochemistry 21, 456-60 (1982)
52. J P Th'ng, R Sung, M Ye and M J Hendzel: H1 family histones in the nucleus. Control of binding and localization by the C-terminal domain. The Journal of biological chemistry 280, 27809-14 (2005) (Pubitemid 41076896)
53. H Talasz, N Sapojnikova, W Helliger, H Lindner and B Puschendorf: In vitro binding of H1 histone subtypes to nucleosomal organized mouse mammary tumor virus long terminal repeat promotor. The Journal of biological chemistry 273, 32236-43 (1998) (Pubitemid 29177170)
54. M Orrego, I Ponte, A Roque, N Buschati, X Mora and P Suau: Differential affinity of mammalian histone H1 somatic subtypes for DNA and chromatin. BMC Biol 5, 22 (2007)
55. J R Khadake and M R Rao: DNA-and chromatincondensing properties of rat testes H1a and H1t compared to those of rat liver H1bdec; H1t is a poor condenser of chromatin. Biochemistry 34, 15792-801 (1995)
56. J Clausell, N Happel, T K Hale, D Doenecke and M Beato: Histone H1 subtypes differentially modulate chromatin condensation without preventing ATP-dependent remodeling by SWI/SNF or NURF. PLoS One 4, e0007243 (2009)
57. D I Gabrilovich, P Cheng, Y Fan, B Yu, E Nikitina, A Sirotkin, M Shurin, T Oyama, Y Adachi, S Nadaf, D P Carbone and A I Skoultchi: H1(0) histone and differentiation of dendritic cells. A molecular target for tumor-derived factors. J Leukoc Biol 72, 285-96 (2002)
58. K E Sekeri-Pataryas and T G Sourlingas: The differentiation-associated linker histone, H1.0, during the in vitro aging and senescence of human diploid fibroblasts. Ann N Y Acad Sci 1100, 361-7 (2007) (Pubitemid 47092673)
59. S De, D T Brown, Z H Lu, G H Leno, S E Wellman and D B Sittman: Histone H1 variants differentially inhibit DNA replication through an affinity for chromatin mediated by their carboxyl-terminal domains. Gene 292, 173-81 (2002) (Pubitemid 34762000)
60. S A Grigoryev, Y A Bulynko and E Y Popova: The end adjusts the means: heterochromatin remodelling during terminal cell differentiation. Chromosome Res 14, 53-69 (2006)
61. M Sancho, E Diani, M Beato and A Jordan: Depletion of human histone H1 variants uncovers specific roles in gene expression and cell growth. PLoS Genet 4, e1000227 (2008)
62. D T Brown, B T Alexander and D B Sittman: Differential effect of H1 variant overexpression on cell cycle progression and gene expression. Nucleic Acids Res 24, 486-93 (1996) (Pubitemid 26085813)
63. H Hashimoto, Y Takami, E Sonoda, T Iwasaki, H Iwano, M Tachibana, S Takeda, T Nakayama, H Kimura and Y Shinkai: Histone H1 null vertebrate cells exhibit altered nucleosome architecture. Nucleic Acids Res 38, 3533-45 (2010)
64. M Murga, I Jaco, Y Fan, R Soria, B Martinez-Pastor, M Cuadrado, S M Yang, M A Blasco, A I Skoultchi and O Fernandez-Capetillo: Global chromatin compaction limits the strength of the DNA damage response. J Cell Biol 178, 1101-8 (2007) (Pubitemid 47480219)
65. G Gerlitz and M Bustin: The role of chromatin structure in cell migration. Trends Cell Biol (2010)
66. G Gerlitz and M Bustin: Efficient cell migration requires global chromatin condensation. J Cell Sci 123, 2207-17 (2010)