-
1
-
-
33847792061
-
Mitochondrial transcription and its regulation in mammalian cells
-
DOI 10.1016/j.tibs.2007.01.003, PII S096800040700028X
-
J Asin-Cayuela CM Gustafsson 2007 Mitochondrial transcription and its regulation in mammalian cells Trends Biochem Sci 32 111 117 17291767 10.1016/j.tibs.2007.01.003 1:CAS:528:DC%2BD2sXisleisLg%3D (Pubitemid 46389585)
-
(2007)
Trends in Biochemical Sciences
, vol.32
, Issue.3
, pp. 111-117
-
-
Asin-Cayuela, J.1
Gustafsson, C.M.2
-
2
-
-
77954399763
-
Long noncoding RNA genes: Conservation of sequence and brain expression among diverse amniotes
-
Chodroff RA, Goodstadt L, Sirey TM, Oliver PL, Davies KE, Green ED, Molnár Z, Ponting CP (2010) Long noncoding RNA genes: conservation of sequence and brain expression among diverse amniotes. Genome Biol 11:R72
-
(2010)
Genome Biol
, vol.11
-
-
Chodroff Ra, G.1
-
3
-
-
78650200618
-
Association of a novel long non-coding RNA in 8q24 with prostate cancer susceptibility
-
20874843 10.1111/j.1349-7006.2010.01737.x 1:CAS:528:DC%2BC3MXhslKntr8%3D
-
S Chung H Nakagawa M Uemura L Piao K Ashikawa N Hosono R Takata S Akamatsu T Kawaguchi T Morizono T Tsunoda Y Daigo K Matsuda N Kamatani Y Nakamura M Kubo 2011 Association of a novel long non-coding RNA in 8q24 with prostate cancer susceptibility Cancer Sci 102 245 252 20874843 10.1111/j.1349-7006.2010.01737.x 1:CAS:528:DC%2BC3MXhslKntr8%3D
-
(2011)
Cancer Sci
, vol.102
, pp. 245-252
-
-
Chung, S.1
Nakagawa, H.2
Uemura, M.3
Piao, L.4
Ashikawa, K.5
Hosono, N.6
Takata, R.7
Akamatsu, S.8
Kawaguchi, T.9
Morizono, T.10
Tsunoda, T.11
Daigo, Y.12
Matsuda, K.13
Kamatani, N.14
Nakamura, Y.15
Kubo, M.16
-
4
-
-
79960911703
-
The reality of pervasive transcription
-
21765801 10.1371/journal.pbio.1000625 1:CAS:528:DC%2BC3MXpvVGjur0%3D
-
MB Clark PP Amaral FJ Schlesinger ME Dinger RJ Taft JL Rinn CP Ponting PF Stadler KJ Morris A Morillon JS Rozowsky M Gerstein C Wahlestedt Y Hayashizaki P Carninci TR Gingeras JS Mattick 2011 The reality of pervasive transcription PLoS Biol 9 e1000625 21765801 10.1371/journal.pbio.1000625 1:CAS:528: DC%2BC3MXpvVGjur0%3D
-
(2011)
PLoS Biol
, vol.9
, pp. 1000625
-
-
Clark, M.B.1
Amaral, P.P.2
Schlesinger, F.J.3
Dinger, M.E.4
Taft, R.J.5
Rinn, J.L.6
Ponting, C.P.7
Stadler, P.F.8
Morris, K.J.9
Morillon, A.10
Rozowsky, J.S.11
Gerstein, M.12
Wahlestedt, C.13
Hayashizaki, Y.14
Carninci, P.15
Gingeras, T.R.16
Mattick, J.S.17
-
5
-
-
1642577167
-
Molecular and Temporal Characteristics of Human Retropseudogenes
-
EJ Devor KA Moffat-Wilson 2003 Molecular and temporal characteristics of human retropseudogenes Hum Biol 75 661 672 14763603 10.1353/hub.2003.0075 (Pubitemid 38113705)
-
(2003)
Human Biology
, vol.75
, Issue.5
, pp. 661-672
-
-
Devor, E.J.1
Moffat-Wilson, K.A.2
-
6
-
-
77955376931
-
Splice-site mutations cause rrp6-mediated nuclear retention of the unspliced RNAs and transcriptional down-regulation of the splicing-defective genes
-
20634951 10.1371/journal.pone.0011540
-
AB Eberle V Hessle R Helbig W Dantoft N Gimber N Visa 2010 Splice-site mutations cause rrp6-mediated nuclear retention of the unspliced RNAs and transcriptional down-regulation of the splicing-defective genes PLoS ONE 5 e11540 20634951 10.1371/journal.pone.0011540
-
(2010)
PLoS ONE
, vol.5
, pp. 11540
-
-
Eberle, A.B.1
Hessle, V.2
Helbig, R.3
Dantoft, W.4
Gimber, N.5
Visa, N.6
-
8
-
-
33646474262
-
Clusters of internally primed transcripts reveal novel long noncoding RNAs
-
16683026 10.1371/journal.pgen.0020037
-
M Furuno KC Pang N Ninomiya S Fukuda MC Frith C Bult C Kai J Kawai P Carninci Y Hayashizaki JS Mattick H Suzuki 2006 Clusters of internally primed transcripts reveal novel long noncoding RNAs PLoS Genet 2 e37 16683026 10.1371/journal.pgen.0020037
-
(2006)
PLoS Genet
, vol.2
, pp. 37
-
-
Furuno, M.1
Pang, K.C.2
Ninomiya, N.3
Fukuda, S.4
Frith, M.C.5
Bult, C.6
Kai, C.7
Kawai, J.8
Carninci, P.9
Hayashizaki, Y.10
Mattick, J.S.11
Suzuki, H.12
-
10
-
-
77955801615
-
Galaxy: A comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences
-
Team Galaxy 20738864 10.1186/gb-2010-11-8-r86
-
J Goecks A Nekrutenko J Taylor Team Galaxy 2010 Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences Genome Biol 11 R86 20738864 10.1186/gb-2010-11-8- r86
-
(2010)
Genome Biol
, vol.11
, pp. 86
-
-
Goecks, J.1
Nekrutenko, A.2
Taylor, J.3
-
11
-
-
34547556305
-
The RNAz web server: Prediction of thermodynamically stable and evolutionarily conserved RNA structures
-
10.1093/nar/gkm222
-
AR Gruber R Neuböck IL Hofacker S Washietl 2007 The RNAz web server: prediction of thermodynamically stable and evolutionarily conserved RNA structures Nucl Acids Res Suppl 35 W335 W338 10.1093/nar/gkm222
-
(2007)
Nucl Acids Res Suppl
, vol.35
-
-
Gruber, A.R.1
Neuböck, R.2
Hofacker, I.L.3
Washietl, S.4
-
13
-
-
77952148742
-
Ab initio reconstruction of cell type-specific transcriptomes in mouse reveals the conserved multi-exonic structure of lincRNAs
-
20436462 10.1038/nbt.1633 1:CAS:528:DC%2BC3cXlsVyitbs%3D
-
M Guttman M Garber JZ Levin J Donaghey J Robinson X Adiconis L Fan MJ Koziol A Gnirke C Nusbaum JL Rinn ES Lander A Regev 2010 Ab initio reconstruction of cell type-specific transcriptomes in mouse reveals the conserved multi-exonic structure of lincRNAs Nat Biotechnol 28 503 510 20436462 10.1038/nbt.1633 1:CAS:528:DC%2BC3cXlsVyitbs%3D
-
(2010)
Nat Biotechnol
, vol.28
, pp. 503-510
-
-
Guttman, M.1
Garber, M.2
Levin, J.Z.3
Donaghey, J.4
Robinson, J.5
Adiconis, X.6
Fan, L.7
Koziol, M.J.8
Gnirke, A.9
Nusbaum, C.10
Rinn, J.L.11
Lander, E.S.12
Regev, A.13
-
14
-
-
0023685544
-
A survey on intron and exon lengths
-
JD Hawkins 1988 A survey on intron and exon lengths Nucl Acids Res Suppl 16 9893 9908 10.1093/nar/16.21.9893 1:CAS:528:DyaL1MXjsVyjsw%3D%3D (Pubitemid 18264962)
-
(1988)
Nucleic Acids Research
, vol.16
, Issue.21
, pp. 9893-9908
-
-
Hawkins, J.D.1
-
15
-
-
77649210966
-
Molecular poltergeists: Mitochondrial DNA copies (numts) in sequenced nuclear genomes
-
20168995 10.1371/journal.pgen.1000834
-
E Hazkani-Covo R Zeller W Martin 2010 Molecular poltergeists: mitochondrial DNA copies (numts) in sequenced nuclear genomes PLoS Genet 6 e1000834 20168995 10.1371/journal.pgen.1000834
-
(2010)
PLoS Genet
, vol.6
, pp. 1000834
-
-
Hazkani-Covo, E.1
Zeller, R.2
Martin, W.3
-
16
-
-
58349088314
-
A susceptibility locus for papillary thyroid carcinoma on chromosome 8q24
-
19147577 10.1158/0008-5472.CAN-08-1071 1:CAS:528:DC%2BD1MXltFShuw%3D%3D
-
H He R Nagy S Liyanarachchi H Jiao W Li S Suster J Kere A de la Chapelle 2009 A susceptibility locus for papillary thyroid carcinoma on chromosome 8q24 Cancer Res 69 625 631 19147577 10.1158/0008-5472.CAN-08-1071 1:CAS:528:DC%2BD1MXltFShuw%3D%3D
-
(2009)
Cancer Res
, vol.69
, pp. 625-631
-
-
He, H.1
Nagy, R.2
Liyanarachchi, S.3
Jiao, H.4
Li, W.5
Suster, S.6
Kere, J.7
De La Chapelle, A.8
-
17
-
-
67650022866
-
Conserved introns reveal novel transcripts in Drosophila melanogaster
-
19458021 10.1101/gr.090050.108 1:CAS:528:DC%2BD1MXosVCktbg%3D
-
M Hiller S Findei S Lein M Marz C Nickel D Rose C Schulz R Backofen SJ Prohaska G Reuter PF Stadler 2009 Conserved introns reveal novel transcripts in Drosophila melanogaster Genome Res 19 1289 1300 19458021 10.1101/gr.090050.108 1:CAS:528:DC%2BD1MXosVCktbg%3D
-
(2009)
Genome Res
, vol.19
, pp. 1289-1300
-
-
Hiller, M.1
Findei, S.2
Lein, S.3
Marz, M.4
Nickel, C.5
Rose, D.6
Schulz, C.7
Backofen, R.8
Prohaska, S.J.9
Reuter, G.10
Stadler, P.F.11
-
18
-
-
33750962013
-
Intron size, abundance, and distribution within untranslated regions of genes
-
DOI 10.1093/molbev/msl111
-
X Hong DG Scofield M Lynch 2006 Intron size, abundance, and distribution within untranslated regions of genes Mol Biol Evol 23 2392 2404 16980575 10.1093/molbev/msl111 1:CAS:528:DC%2BD28Xht1ejtbrM (Pubitemid 44737133)
-
(2006)
Molecular Biology and Evolution
, vol.23
, Issue.12
, pp. 2392-2404
-
-
Hong, X.1
Scofield, D.G.2
Lynch, M.3
-
19
-
-
33847185603
-
A screen for nuclear transcripts identifies two linked noncoding RNAs associated with SC35 splicing domains
-
17270048 10.1186/1471-2164-8-39
-
J Hutchinson AW Ensminger CM Clemson CR Lynch JB Lawrence A Chess 2007 A screen for nuclear transcripts identifies two linked noncoding RNAs associated with SC35 splicing domains BMC Genomics 8 39 17270048 10.1186/1471-2164-8-39
-
(2007)
BMC Genomics
, vol.8
, pp. 39
-
-
Hutchinson, J.1
Ensminger, A.W.2
Clemson, C.M.3
Lynch, C.R.4
Lawrence, J.B.5
Chess, A.6
-
20
-
-
34250160256
-
RNA maps reveal new RNA classes and a possible function for pervasive transcription
-
DOI 10.1126/science.1138341
-
P Kapranov J Cheng S Dike D Nix R Duttagupta AT Willingham PF Stadler J Hertel J Hackermüller IL Hofacker I Bell E Cheung J Drenkow E Dumais S Patel G Helt G Madhavan A Piccolboni V Sementchenko H Tammana TR Gingeras 2007 RNA maps reveal new RNA classes and a possible function for pervasive transcription Science 316 1484 1488 17510325 10.1126/science.1138341 1:CAS:528:DC%2BD2sXmtFSjtrw%3D (Pubitemid 46906616)
-
(2007)
Science
, vol.316
, Issue.5830
, pp. 1484-1488
-
-
Kapranov, P.1
Cheng, J.2
Dike, S.3
Nix, D.A.4
Duttagupta, R.5
Willingham, A.T.6
Stadler, P.F.7
Hertel, J.8
Hackermuller, J.9
Hofacker, I.L.10
Bell, I.11
Cheung, E.12
Drenkow, J.13
Dumais, E.14
Patel, S.15
Helt, G.16
Ganesh, M.17
Ghosh, S.18
Piccolboni, A.19
Sementchenko, V.20
Tammana, H.21
Gingeras, T.R.22
more..
-
21
-
-
78650292831
-
The majority of total nuclear-encoded non-ribosomal RNA in a human cell is 'dark matter' un-annotated RNA
-
21176148 10.1186/1741-7007-8-149 1:CAS:528:DC%2BC3MXisFWquw%3D%3D
-
P Kapranov G St Laurent T Raz F Ozsolak CP Reynolds PH Sorensen G Reaman P Milos RJ Arceci JF Thompson TJ Triche 2010 The majority of total nuclear-encoded non-ribosomal RNA in a human cell is 'dark matter' un-annotated RNA BMC Biol 8 149 21176148 10.1186/1741-7007-8-149 1:CAS:528: DC%2BC3MXisFWquw%3D%3D
-
(2010)
BMC Biol
, vol.8
, pp. 149
-
-
Kapranov, P.1
St Laurent, G.2
Raz, T.3
Ozsolak, F.4
Reynolds, C.P.5
Sorensen, P.H.6
Reaman, G.7
Milos, P.8
Arceci, R.J.9
Thompson, J.F.10
Triche, T.J.11
-
23
-
-
34648816826
-
Exporting RNA from the nucleus to the cytoplasm
-
DOI 10.1038/nrm2255, PII NRM2255
-
A Köhler E Hurt 2007 Exporting RNA from the nucleus to the cytoplasm Nat Rev Mol Cell Biol 8 761 773 17786152 10.1038/nrm2255 (Pubitemid 47462133)
-
(2007)
Nature Reviews Molecular Cell Biology
, vol.8
, Issue.10
, pp. 761-773
-
-
Kohler, A.1
Hurt, E.2
-
24
-
-
81055126291
-
Export and stability of naturally intronless mRNAs require specific coding region sequences and the TREX mRNA export complex
-
22010220 10.1073/pnas.1113076108 1:CAS:528:DC%2BC3MXhsVOktLnP
-
H Lei AP Dias R Reed 2011 Export and stability of naturally intronless mRNAs require specific coding region sequences and the TREX mRNA export complex Proc Natl Acad Sci USA 108 17985 17990 22010220 10.1073/pnas.1113076108 1:CAS:528:DC%2BC3MXhsVOktLnP
-
(2011)
Proc Natl Acad Sci USA
, vol.108
, pp. 17985-17990
-
-
Lei, H.1
Dias, A.P.2
Reed, R.3
-
25
-
-
79951580425
-
Control of RNA processing by a large noncoding RNA over-expressed in carcinomas
-
21266177 10.1016/j.febslet.2011.01.030 1:CAS:528:DC%2BC3MXhvFCgsbY%3D
-
R Lin M Roychowdhury-Saha C Black AT Watt EG Marcusson SM Freier TS Edgington 2011 Control of RNA processing by a large noncoding RNA over-expressed in carcinomas FEBS Lett 585 671 671 21266177 10.1016/j.febslet.2011.01.030 1:CAS:528:DC%2BC3MXhvFCgsbY%3D
-
(2011)
FEBS Lett
, vol.585
, pp. 671-671
-
-
Lin, R.1
Roychowdhury-Saha, M.2
Black, C.3
Watt, A.T.4
Marcusson, E.G.5
Freier, S.M.6
Edgington, T.S.7
-
26
-
-
80053384136
-
IGD: A resource for intronless genes in the human genome
-
1:CAS:528:DC%2BC3MXht1Clu7jO
-
A Louhichi A Fourati A Rebaï 2011 IGD: a resource for intronless genes in the human genome Gen Comp Endocrinol 488 35 40 1:CAS:528: DC%2BC3MXht1Clu7jO
-
(2011)
Gen Comp Endocrinol
, vol.488
, pp. 35-40
-
-
Louhichi, A.1
Fourati, A.2
Rebaï, A.3
-
27
-
-
33847193479
-
Androgen responsive intronic non-coding RNAs
-
17263875 10.1186/1741-7007-5-4
-
R Louro HI Nakaya PP Amaral F Festa MC Sogayar AM da Silva S Verjovski-Almeida EM Reis 2007 Androgen responsive intronic non-coding RNAs BMC Biol 5 4 17263875 10.1186/1741-7007-5-4
-
(2007)
BMC Biol
, vol.5
, pp. 4
-
-
Louro, R.1
Nakaya, H.I.2
Amaral, P.P.3
Festa, F.4
Sogayar, M.C.5
Da Silva, A.M.6
Verjovski-Almeida, S.7
Reis, E.M.8
-
28
-
-
45449108588
-
Conserved tissue expression signatures of intronic noncoding RNAs transcribed from human and mouse loci
-
18495418 10.1016/j.ygeno.2008.03.013 1:CAS:528:DC%2BD1cXnsFWru7g%3D
-
R Louro T El-Jundi HI Nakaya EM Reis S Verjovski-Almeida 2008 Conserved tissue expression signatures of intronic noncoding RNAs transcribed from human and mouse loci Genomics 92 18 25 18495418 10.1016/j.ygeno.2008.03.013 1:CAS:528:DC%2BD1cXnsFWru7g%3D
-
(2008)
Genomics
, vol.92
, pp. 18-25
-
-
Louro, R.1
El-Jundi, T.2
Nakaya, H.I.3
Reis, E.M.4
Verjovski-Almeida, S.5
-
29
-
-
61849133411
-
Long intronic noncoding RNA transcription: Expression noise or expression choice?
-
19071207 10.1016/j.ygeno.2008.11.009 1:CAS:528:DC%2BD1MXjtFensr0%3D
-
R Louro AS Smirnova S Verjovski-Almeida 2009 Long intronic noncoding RNA transcription: expression noise or expression choice? Genomics 93 291 298 19071207 10.1016/j.ygeno.2008.11.009 1:CAS:528:DC%2BD1MXjtFensr0%3D
-
(2009)
Genomics
, vol.93
, pp. 291-298
-
-
Louro, R.1
Smirnova, A.S.2
Verjovski-Almeida, S.3
-
30
-
-
78650511795
-
Direct visualization of the co-transcriptional assembly of a nuclear body by noncoding RNAs
-
21170033 10.1038/ncb2140 1:CAS:528:DC%2BC3cXhsFyksrzM
-
YS Mao H Sunwoo B Zhang DL Spector 2011 Direct visualization of the co-transcriptional assembly of a nuclear body by noncoding RNAs Nat Cell Biol 13 95 101 21170033 10.1038/ncb2140 1:CAS:528:DC%2BC3cXhsFyksrzM
-
(2011)
Nat Cell Biol
, vol.13
, pp. 95-101
-
-
Mao, Y.S.1
Sunwoo, H.2
Zhang, B.3
Spector, D.L.4
-
31
-
-
54149091257
-
Metabolism and regulation of canonical histone mRNAs: Life without a poly(A) tail
-
18927579 10.1038/nrg2438 1:CAS:528:DC%2BD1cXht1Ggu77L
-
WF Marzluff EJ Wagner RJ Duronio 2008 Metabolism and regulation of canonical histone mRNAs: life without a poly(A) tail Nat Rev Genet 9 843 854 18927579 10.1038/nrg2438 1:CAS:528:DC%2BD1cXht1Ggu77L
-
(2008)
Nat Rev Genet
, vol.9
, pp. 843-854
-
-
Marzluff, W.F.1
Wagner, E.J.2
Duronio, R.J.3
-
32
-
-
78650051452
-
Regulated post-transcriptional RNA cleavage diversifies the eukaryotic transcriptome
-
21045082 10.1101/gr.112128.110 1:CAS:528:DC%2BC3cXhsFGgu7bI
-
TR Mercer ME Dinger CP Bracken G Kolle JM Szubert DJ Korbie ME Askarian-Amiri BB Gardiner GJ Goodall SM Grimmond JS Mattick 2010 Regulated post-transcriptional RNA cleavage diversifies the eukaryotic transcriptome Genome Res 20 1639 1650 21045082 10.1101/gr.112128.110 1:CAS:528: DC%2BC3cXhsFGgu7bI
-
(2010)
Genome Res
, vol.20
, pp. 1639-1650
-
-
Mercer, T.R.1
Dinger, M.E.2
Bracken, C.P.3
Kolle, G.4
Szubert, J.M.5
Korbie, D.J.6
Askarian-Amiri, M.E.7
Gardiner, B.B.8
Goodall, G.J.9
Grimmond, S.M.10
Mattick, J.S.11
-
33
-
-
79953673245
-
Expression of distinct RNAs from 3′ untranslated regions
-
10.1093/nar/gkq1158 1:CAS:528:DC%2BC3MXjvFeiurw%3D
-
TR Mercer D Wilhelm ME Dinger G Soldà à DJ Korbie EA Glazov V Truong M Schwenke C Simons KI Matthaei R Saint P Koopman JS Mattick 2011 Expression of distinct RNAs from 3′ untranslated regions Nucl Acids Res Suppl 39 2393 2403 10.1093/nar/gkq1158 1:CAS:528:DC%2BC3MXjvFeiurw%3D
-
(2011)
Nucl Acids Res Suppl
, vol.39
, pp. 2393-2403
-
-
Mercer, T.R.1
Wilhelm, D.2
Dinger, M.E.3
Soldà, A.G.4
Korbie, D.J.5
Glazov, E.A.6
Truong, V.7
Schwenke, M.8
Simons, C.9
Matthaei, K.I.10
Saint, R.11
Koopman, P.12
Mattick, J.S.13
-
34
-
-
77954231525
-
Characterization of the RNA content of chromatin
-
20404130 10.1101/gr.103473.109 1:CAS:528:DC%2BC3cXovFeitr0%3D
-
T Mondal M Rasmussen GK Pandey A Isaksson C Kanduri 2010 Characterization of the RNA content of chromatin Genome Res 20 899 907 20404130 10.1101/gr.103473.109 1:CAS:528:DC%2BC3cXovFeitr0%3D
-
(2010)
Genome Res
, vol.20
, pp. 899-907
-
-
Mondal, T.1
Rasmussen, M.2
Pandey, G.K.3
Isaksson, A.4
Kanduri, C.5
-
35
-
-
34250189924
-
Genome mapping and expression analyses of human intronic noncoding RNAs reveal tissue-specific patterns and enrichment in genes related to regulation of transcription
-
DOI 10.1186/gb-2007-8-3-r43
-
HI Nakaya PP Amaral R Louro A Lopes AA Fachel YB Moreira TA El-Jundi AM da Silva EM Reis S Verjovski-Almeida 2007 Genome mapping and expression analyses of human intronic noncoding RNAs reveal tissue-specific patterns and enrichment in genes related to regulation of transcription Genome Biol 8 R43 17386095 10.1186/gb-2007-8-3-r43 (Pubitemid 351851046)
-
(2007)
Genome Biology
, vol.8
, Issue.3
-
-
Nakaya, H.I.1
Amaral, P.P.2
Louro, R.3
Lopes, A.4
Fachel, A.A.5
Moreira, Y.B.6
El-Jundi, T.A.7
Da Silva, A.M.8
Reis, E.M.9
Verjovski-Almeida, S.10
-
36
-
-
84858692231
-
Computational analysis of functional long noncoding RNAs reveals lack of peptide-coding capacity and parallels with 3′utrs
-
doi: 10.1261/rna.029520.111
-
Niazi F, Valadkhan S (2012) Computational analysis of functional long noncoding RNAs reveals lack of peptide-coding capacity and parallels with 3′utrs. RNA. doi: 10.1261/rna.029520.111
-
(2012)
RNA
-
-
Niazi, F.1
Valadkhan, S.2
-
38
-
-
0016825478
-
Chromatin-associated RNA content of heterochromatin and euchromatin
-
1186664 10.1007/BF01731728 1:CAS:528:DyaE28XhsVSq
-
IJ Paul JD Duerksen 1975 Chromatin-associated RNA content of heterochromatin and euchromatin Mol Cell Biochem 9 9 16 1186664 10.1007/BF01731728 1:CAS:528:DyaE28XhsVSq
-
(1975)
Mol Cell Biochem
, vol.9
, pp. 9-16
-
-
Paul, I.J.1
Duerksen, J.D.2
-
39
-
-
33846057724
-
NCBI reference sequences (RefSeq): A curated non-redundant sequence database of genomes, transcripts and proteins
-
DOI 10.1093/nar/gkl842
-
KD Pruitt T Tatusova DR Maglott 2007 NCBI reference sequences (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins Nucl Acids Res Suppl 35 D61 D65 10.1093/nar/gkl842 1:CAS:528: DC%2BD2sXivFGkuw%3D%3D (Pubitemid 46056171)
-
(2007)
Nucleic Acids Research
, vol.35
, Issue.SUPPL. 1
-
-
Pruitt, K.D.1
Tatusova, T.2
Maglott, D.R.3
-
40
-
-
60149092541
-
The long noncoding RNA Kcnq1ot1 organises a lineage-specific nuclear domain for epigenetic gene silencing
-
1:CAS:528:DC%2BD1MXjsFKgt7c%3D
-
L Redrup MR Branco ER Perdeaux C Krueger A Lewis F Santos T Nagano BS Cobb P Fraser W Reik 2009 The long noncoding RNA Kcnq1ot1 organises a lineage-specific nuclear domain for epigenetic gene silencing Dev Biol (Basel) 136 525 530 1:CAS:528:DC%2BD1MXjsFKgt7c%3D
-
(2009)
Dev Biol (Basel)
, vol.136
, pp. 525-530
-
-
Redrup, L.1
Branco, M.R.2
Perdeaux, E.R.3
Krueger, C.4
Lewis, A.5
Santos, F.6
Nagano, T.7
Cobb, B.S.8
Fraser, P.9
Reik, W.10
-
41
-
-
4444364003
-
Antisense intronic non-coding RNA levels correlate to the degree of tumor differentiation in prostate cancer
-
DOI 10.1038/sj.onc.1207880
-
EM Reis HI Nakaya R Louro FC Canavez AV Flatschart GT Almeida CM Egidio AC Paquola AA Machado F Festa D Yamamoto R Alvarenga CC da Silva GC Brito SD Simon CA Moreira-Filho KR Leite LH Camara-Lopes FS Campos E Gimba GM Vignal H El-Dorry MC Sogayar MA Barcinski AM da Silva S Verjovski-Almeida 2004 Antisense intronic non-coding RNA levels correlate to the degree of tumor differentiation in prostate cancer Oncogene 23 6684 6692 15221013 10.1038/sj.onc.1207880 1:CAS:528:DC%2BD2cXmvFGisb4%3D (Pubitemid 39265533)
-
(2004)
Oncogene
, vol.23
, Issue.39
, pp. 6684-6692
-
-
Reis, E.M.1
Nakaya, H.I.2
Louro, R.3
Canavez, F.C.4
Flatschart, A.V.F.5
Almeida, G.T.6
Egidio, C.M.7
Paquola, A.C.8
Machado, A.A.9
Festa, F.10
Yamamoto, D.11
Alvarenga, R.12
Da Silva, C.C.13
Brito, G.C.14
Simon, S.D.15
Moreira-Filho, C.A.16
Leite, K.R.17
Camara-Lopes, L.H.18
Campos, F.S.19
Gimba, E.20
Vignal, G.M.21
El-Dorry, H.22
Sogayar, M.C.23
Barcinski, M.A.24
Da Silva, A.M.25
Verjovski-Almeida, S.26
more..
-
42
-
-
0037442493
-
The transcriptional activity of human chromosome 22
-
DOI 10.1101/gad.1055203
-
JL Rinn G Euskirchen P Bertone R Martone NM Luscombe S Hartman PM Harrison FK Nelson P Miller M Gerstein S Weissman M Snyder 2003 The transcriptional activity of human chromosome 22 Genes Dev 17 529 540 12600945 10.1101/gad.1055203 1:CAS:528:DC%2BD3sXhslCqur0%3D (Pubitemid 36258766)
-
(2003)
Genes and Development
, vol.17
, Issue.4
, pp. 529-540
-
-
Rinn, J.L.1
Euskirchen, G.2
Bertone, P.3
Martone, R.4
Luscombe, N.M.5
Hartman, S.6
Harrison, P.M.7
Kenneth Nelson, F.8
Miller, P.9
Gerstein, M.10
Weissman, S.11
Snyder, M.12
-
43
-
-
43149109529
-
RNA is an integral component of chromatin that contributes to its structural organization
-
DOI 10.1371/journal.pone.0001182
-
A Rodríguez-Campos F Azorín 2007 RNA is an integral component of chromatin that contributes to its structural organization PLoS ONE 2 e1182 18000552 10.1371/journal.pone.0001182 (Pubitemid 351638070)
-
(2007)
PLoS ONE
, vol.2
, Issue.11
-
-
Rodriguez-Campos, A.1
Azorin, F.2
-
44
-
-
62449319486
-
MEN ε/β noncoding RNAs are essential for structural integrity of nuclear paraspeckles
-
19188602 10.1073/pnas.0807899106 1:CAS:528:DC%2BD1MXislahsrg%3D
-
YTF Sasaki T Ideue M Sano T Mituyama T Hirose 2009 MEN ε/β noncoding RNAs are essential for structural integrity of nuclear paraspeckles Proc Natl Acad Sci USA 106 2525 2530 19188602 10.1073/pnas.0807899106 1:CAS:528:DC%2BD1MXislahsrg%3D
-
(2009)
Proc Natl Acad Sci USA
, vol.106
, pp. 2525-2530
-
-
Sasaki, Y.T.F.1
Ideue, T.2
Sano, M.3
Mituyama, T.4
Hirose, T.5
-
45
-
-
33747603960
-
The imprinted Air ncRNA is an atypical RNAPII transcript that evades splicing and escapes nuclear export
-
DOI 10.1038/sj.emboj.7601245, PII 7601245
-
CIM Seidl SH Stricker DP Barlow 2006 The imprinted Air ncRNA is an atypical RNAPII transcript that evades splicing and escapes nuclear export EMBO J 25 1 11 10.1038/sj.emboj.7601245 (Pubitemid 44264867)
-
(2006)
EMBO Journal
, vol.25
, Issue.15
, pp. 3565-3575
-
-
Seidl, C.I.M.1
Stricker, S.H.2
Barlow, D.P.3
-
46
-
-
77954968805
-
Distinct patterns of expression and evolution of intronless and intron-containing mammalian genes
-
20360214 10.1093/molbev/msq086 1:CAS:528:DC%2BC3cXptlegtrg%3D
-
SA Shabalina AY Ogurtsov AN Spiridonov PS Novichkov NA Spiridonov EV Koonin 2010 Distinct patterns of expression and evolution of intronless and intron-containing mammalian genes Mol Biol Evol 27 1745 1749 20360214 10.1093/molbev/msq086 1:CAS:528:DC%2BC3cXptlegtrg%3D
-
(2010)
Mol Biol Evol
, vol.27
, pp. 1745-1749
-
-
Shabalina, S.A.1
Ogurtsov, A.Y.2
Spiridonov, A.N.3
Novichkov, P.S.4
Spiridonov, N.A.5
Koonin, E.V.6
-
47
-
-
78049458919
-
Evolution of the long non-coding RNAs MALAT1 and MEN β/ε
-
Ferreira CE, Miyano S, Stadler PF (eds) lecture notes in computer science (pp). Springer, Heidelberg
-
Stadler PF (2010) Evolution of the long non-coding RNAs MALAT1 and MEN β/ε. In: Ferreira CE, Miyano S, Stadler PF (eds) Advances in bioinformatics and computational biology. 5th Brazilian symposium on bioinformatics, vol 6268 of lecture notes in computer science (pp 1-12). Springer, Heidelberg
-
(2010)
Advances in Bioinformatics and Computational Biology. 5th Brazilian Symposium on Bioinformatics
, vol.6268
, pp. 1-12
-
-
Stadler, P.F.1
-
48
-
-
57149112497
-
Silencing and transcriptional properties of the imprinted Airn ncRNA are independent of the endogenous promoter
-
19008856 10.1038/emboj.2008.239 1:CAS:528:DC%2BD1cXhtl2gsLbL
-
SH Stricker L Steenpass FM Pauler F Santoro PA Latos R Huang MV Koerner MA Sloane KE Warczok DP Barlow 2008 Silencing and transcriptional properties of the imprinted Airn ncRNA are independent of the endogenous promoter EMBO J 27 3116 3128 19008856 10.1038/emboj.2008.239 1:CAS:528:DC%2BD1cXhtl2gsLbL
-
(2008)
EMBO J
, vol.27
, pp. 3116-3128
-
-
Stricker, S.H.1
Steenpass, L.2
Pauler, F.M.3
Santoro, F.4
Latos, P.A.5
Huang, R.6
Koerner, M.V.7
Sloane, M.A.8
Warczok, K.E.9
Barlow, D.P.10
-
49
-
-
61849113891
-
MEN ε/β nuclear-retained non-coding RNAs are up-regulated upon muscle differentiation and are essential components of paraspeckles
-
19106332 10.1101/gr.087775.108 1:CAS:528:DC%2BD1MXjt12ktbs%3D
-
H Sunwoo ME Dinger JE Wilusz PP Amaral JS Mattick DL Spector 2009 MEN ε/β nuclear-retained non-coding RNAs are up-regulated upon muscle differentiation and are essential components of paraspeckles Genome Res 19 347 359 19106332 10.1101/gr.087775.108 1:CAS:528:DC%2BD1MXjt12ktbs%3D
-
(2009)
Genome Res
, vol.19
, pp. 347-359
-
-
Sunwoo, H.1
Dinger, M.E.2
Wilusz, J.E.3
Amaral, P.P.4
Mattick, J.S.5
Spector, D.L.6
-
50
-
-
81055150443
-
Long noncoding intronic RNAs are differentially expressed in primary and metastatic pancreatic cancer
-
22078386 10.1186/1476-4598-10-141 1:CAS:528:DC%2BC38XksFGrtQ%3D%3D
-
AC Tahira MS Kubrusly MF Faria B Dazzani RS Fonseca V Maracaja-Coutinho S Verjovski-Almeida MC Machado EM Reis 2011 Long noncoding intronic RNAs are differentially expressed in primary and metastatic pancreatic cancer Mol Cancer 10 141 22078386 10.1186/1476-4598-10-141 1:CAS:528:DC%2BC38XksFGrtQ%3D%3D
-
(2011)
Mol Cancer
, vol.10
, pp. 141
-
-
Tahira, A.C.1
Kubrusly, M.S.2
Faria, M.F.3
Dazzani, B.4
Fonseca, R.S.5
Maracaja-Coutinho, V.6
Verjovski-Almeida, S.7
MacHado, M.C.8
Reis, E.M.9
-
51
-
-
34250305146
-
Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project
-
The ENCODE Project Consortium
-
The ENCODE Project Consortium 2007 Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project Nat Biotechnol 447 799 816
-
(2007)
Nat Biotechnol
, vol.447
, pp. 799-816
-
-
-
52
-
-
77952276222
-
Detection of novel 3′ untranslated region extensions with 3′ expression microarrays
-
20346121 10.1186/1471-2164-11-205
-
L Thorrez LC Tranchevent HJ Chan Y Moreau F Schuit 2010 Detection of novel 3′ untranslated region extensions with 3′ expression microarrays BMC Genomics 11 205 20346121 10.1186/1471-2164-11-205
-
(2010)
BMC Genomics
, vol.11
, pp. 205
-
-
Thorrez, L.1
Tranchevent, L.C.2
Chan, H.J.3
Moreau, Y.4
Schuit, F.5
-
54
-
-
80053045739
-
Molecular mechanisms of long noncoding RNAs
-
21925379 10.1016/j.molcel.2011.08.018 1:CAS:528:DC%2BC3MXhtFymsLjP
-
KC Wang HY Chang 2011 Molecular mechanisms of long noncoding RNAs Mol Cell 43 904 914 21925379 10.1016/j.molcel.2011.08.018 1:CAS:528: DC%2BC3MXhtFymsLjP
-
(2011)
Mol Cell
, vol.43
, pp. 904-914
-
-
Wang, K.C.1
Chang, H.Y.2
-
55
-
-
46649093597
-
Induced ncRNAs allosterically modify RNA-binding proteins in cis to inhibit transcription
-
DOI 10.1038/nature06992, PII NATURE06992
-
X Wang S Arai X Song D Reichart K Du G Pascual P Tempst MG Rosenfeld CK Glass R Kurokawa 2008 Induced ncRNAs allosterically modify RNA-binding proteins in cis to inhibit transcription Nat Biotechnol 454 126 130 1:CAS:528: DC%2BD1cXotVertL4%3D (Pubitemid 351934270)
-
(2008)
Nature
, vol.454
, Issue.7200
, pp. 126-130
-
-
Wang, X.1
Arai, S.2
Song, X.3
Reichart, D.4
Du, K.5
Pascual, G.6
Tempst, P.7
Rosenfeld, M.G.8
Glass, C.K.9
Kurokawa, R.10
-
57
-
-
79953009230
-
RNAcode: Robust prediction of protein coding regions in comparative genomics data
-
1:CAS:528:DC%2BC3MXkslSgurk%3D
-
S Washietl S Findei S Müller S Kalkhof M von Bergen IL Hofacker PF Stadler N Goldman 2011 RNAcode: robust prediction of protein coding regions in comparative genomics data RNA Biol 17 578 594 1:CAS:528:DC%2BC3MXkslSgurk%3D
-
(2011)
RNA Biol
, vol.17
, pp. 578-594
-
-
Washietl, S.1
Findei, S.2
Müller, S.3
Kalkhof, S.4
Von Bergen, M.5
Hofacker, I.L.6
Stadler, P.F.7
Goldman, N.8
-
58
-
-
68349090253
-
Regulation of the mammalian epigenome by long noncoding RNAs
-
19015002 10.1016/j.bbagen.2008.10.007 1:CAS:528:DC%2BD1MXhtVSns73N
-
J Whitehead GK Pandey C Kanduri 2009 Regulation of the mammalian epigenome by long noncoding RNAs Biochim Biophys Acta 1790 936 947 19015002 10.1016/j.bbagen.2008.10.007 1:CAS:528:DC%2BD1MXhtVSns73N
-
(2009)
Biochim Biophys Acta
, vol.1790
, pp. 936-947
-
-
Whitehead, J.1
Pandey, G.K.2
Kanduri, C.3
-
59
-
-
15744387853
-
The noncoding RNA Taurine Upregulated Gene 1 is required for differentiation of the murine retina
-
DOI 10.1016/j.cub.2005.02.027
-
TL Young T Matsuda CL Cepko 2005 The noncoding RNA taurine upregulated gene 1 is required for differentiation of the murine retina Curr Biol 15 501 512 15797018 10.1016/j.cub.2005.02.027 1:CAS:528:DC%2BD2MXis1Kmt74%3D (Pubitemid 40413388)
-
(2005)
Current Biology
, vol.15
, Issue.6
, pp. 501-512
-
-
Young, T.L.1
Matsuda, T.2
Cepko, C.L.3
-
60
-
-
35648987151
-
Analysis of the role of retrotransposition in gene evolution in vertebrates
-
DOI 10.1186/1471-2105-8-308
-
Z Yu D Morais M Ivanga PM Harrison 2007 Analysis of the role of retrotransposition in gene evolution in vertebrates BMC Bioinform 8 308 10.1186/1471-2105-8-308 (Pubitemid 350031054)
-
(2007)
BMC Bioinformatics
, vol.8
, pp. 308
-
-
Yu, Z.1
Morais, D.2
Ivanga, M.3
Harrison, P.M.4
|