High-resolution NMR field-cycling device for full-range relaxation and structural studies of biopolymers on a shared commercial instrument

Journal of Biomolecular NMR

Volumn 52, Issue 2, 2012, Pages 159-177

  Redfield, Alfred G ^a  

^a BRANDEIS UNIVERSITY   (United States)

Author keywords

Commercial instrument; Dynamics; Motor drive; Relaxation dispersion; Sample shuttle

Indexed keywords

BIOPOLYMER; NUCLEIC ACID; PHOSPHOLIPID; PHOSPHORUS; PROTEIN;

ANALYTICAL EQUIPMENT; ARTICLE; HIGH RESOLUTION NUCLEAR MAGNETIC RESONANCE FIELD CYCLING DEVICE; MAGNETIC FIELD; PRIORITY JOURNAL; SENSITIVITY ANALYSIS; SPIN LABELING; STRUCTURE ANALYSIS; CHEMISTRY; EQUIPMENT DESIGN; INSTRUMENTATION; METHODOLOGY; NUCLEAR MAGNETIC RESONANCE;

BIOPOLYMERS; EQUIPMENT DESIGN; NUCLEAR MAGNETIC RESONANCE, BIOMOLECULAR; NUCLEIC ACIDS; PHOSPHOLIPIDS; PHOSPHORUS ISOTOPES; PROTEINS; SPIN LABELS;

EID: 84860202526     PISSN: 09252738     EISSN: 15735001     Source Type: Journal    
DOI: 10.1007/s10858-011-9594-1     Document Type: Article

References (52)

1. Amero C, Schanda P, Ascunsion Dur A, Iyala I, Marion D, Franzetti B, Brutscher B, Boisbouvier J (2009) Fast two-dimensional NMR spectroscopy of high molecular weight assemblies. J Am Chem Soc 131:3448-3449
2. Batnagar J, Borbat P, Pollard A, Bilwes A, Freed J, Crane B (2010) Structure of the ternary complex formed by a chemotaxis receptor signaling domain, the CheA histidine kinase, and the coupling protein CheW as determined by pulsed ESR spectros-copy. Biochemistry 49:3824-3841
3. Borbat P, Freed J (2007) Measuring distances by pulsed dipolar ESR spectroscopy: spin-labeled histidine kinases in two component signaling systems. In: Simon M, Crane B, Crane A (eds) Methods in enzymology, vol 423. Elsevier, pp 52-116 (Pubitemid 46991091)
4. 13C NMR relaxation time measurements. Proc Natl Acad Sci USA 80:4325-4329 (Pubitemid 13077830)
5. Callabero-Manrique E, Bray J, Deutschman W, Dahlquist F, Guenza M (2007) A theory of protein dynamics to predict NMR relaxation. Biophys J 93:4128-4140 (Pubitemid 350294462)
6. Chou C-Y, Chu M, Chang C-F, Huang T-H (2011)Acompact high-speed mechanical sample shuttle for field-dependent high-resolution solution NMR. J Magn Reson. doi:10.1016/j.jmr.2011.12.001
7. Clarkson M, Lei M, Eisenmesser E, Labeikovsky W, Redfield A, Kern D (2009) Mesodynamics in the SARS nucleocapsid measured by NMR field cycling. J Biomol NMR 45:217-225
8. Clore M, Gronenborn A (1982) Theory and applications of the transferred nuclear Overhauser effect to the study of the conformations of small ligands attached to proteins. J Magn Reson 48:402-417
9. Clore M, Iwahara J (2009) Theory, practice, and applications of paramagnetic relaxation enhancement for the characterization of transient low-population states of biological macromolecules and their complexes. Chem Rev 109:4108-4139
10. Da Costa G, Mouret L, Chevanc S, Le Rumeur E, Bondon A (2007) NMR of small molecules interacting with lipids in small unilamelar vesicles. Eur Biophys J 36:933-942 (Pubitemid 350045036)
11. De Angelis A, Jones D, Grant C, Park S, Mesleh M, Opella S (2005)NMR experiments on aligned samples of membrane proteins. In: James T (ed) Methods in enzymology, vol 394. Elsevier, pp 350-382 (Pubitemid 40460923)
12. Diakova G, Goddard Y, Korb J-P, Bryant R (2010) Water and backbone dynamics in a hydrated protein. Biophys J 98:138-146
13. 2H NMR experiments of phospholipid bilayers on a spherical solid support. Phys Rev E 51:4743-4750
14. Ferrante G, Sykora S (2004) Technical aspects of fast field cycling. In: van Edik R, Bertini I (eds) Advances in inorganic chemistry, vol 57. Academic Press, pp 405-470
15. Gaede H, Gawrisch K (2003) Latteral diffusion of lipid, water, and a hydrophobic drug in multilamellar liposomes. Biophys J 85: 1734-1740 (Pubitemid 37052256)
16. Grosse S, Gubaydullin F, Scheelken S, Vieth H-M, Yurkovskaya A (1999) Field cycling by fast NMR probe transfer: design and application in field-dependent CIDNP experiments. Appl Magn Reson 17:211-225
17. Gueron M (1975) Nuclear relaxation in macromolecules by paramagnetic Ions: a novel mechanism. J Magn Reson 19:58-66
18. Hallock K, Wildman K, Lee D-K, Ramamoorthy A (2002) An innovative procedure using a sublimable solid to align bilayers for solid-state NMR studies. Biophys J 82:2499-2503 (Pubitemid 34441288)
19. Hecht R, Redfield A (1963) Overhauser effect in metallic lithium and sodium. Phys Rev 132:972-977
20. Ivanov D, Redfield A (2004) Field cycling method with central transition readout for pure quadrupole resonance detection in dilute systems. J Magn Reson 166:19-27
21. Kang C, Vanoye C, Welch R, Van Horne W, Sanders C (2010) Functional delivery of a membrane protein into oocyte membranes using bicelles. Biochemistry 49:632-655
22. Kerwood D, Bolton P (1987) A sample shuttling device suitable for two-dimensional low-field NMR. J Magn Reson 75:142-146
23. Kimmich R, Estaban A (2004) Field cycling NMR relaxometry. Prog NMR Spectrosc 44:257-320
24. Klauda J, Eldho N, Gawrisch K, Brooks B, Pastor R (2008a) Collective and noncollective modes of NMR relaxation in lipid vesicles and multilayers. J Phys Chem B112:5924-5929
25. Klauda J, Roberts M, Redfield A, Brooks B, Pastor R (2008b) Rotation of lipids in membranes: MD simulation, 31P spinlattice relaxation, and rigid-body dynamics. Biophys J 94: 3074-3083
26. Koenig S, Brown R (1990) Field cycling relaxometry of protein solutions and tissues: implications for MRI. Prog NMR Spectrosc 22:487-567 (Pubitemid 21736094)
27. Korchak S, Kiryutin A, Ivanov K, Yurkovskaya A, Grishin Y, Zimmermann H, Vieth H-M (2010) Low-field, time-resolved dynamic nuclear polarization with field cycling and highresolution NMR detection. Appl Magn Reson 37:515-537
28. Krahn A, Lottman P, Marquardsen T, Tavernier A, Turke M-T, Reese M, Leonov A, Bennati M, Hoefer P, Engleke F, Griesinger C (2010) Shuttle DNP spectrometer with a two-center magnet. Phys Chem Chem Phys 12:5830-5840
29. 2 in solution studied by NMR. Biochemistry 30:1372-1385
30. Leftin A, Brown M (2011) An NMR database for simulations of membrane dynamics. Biochem Biophys Acta 1808:818-839
31. Legget J, Hunter R, Granwehr J, Panek R, Linde A, Horsewill J, Mcmaster J, Smith G, Kockenberger W (2010) A dedicated spectrometer for dissolution DNP NMR spectroscopy. Phys Chem Chem Phys 12:5883-5892
32. 2+ complex and mechanism of its pyrophosphohydrolase reaction. Biochemistry 36:1199-1211 (Pubitemid 27074944)
33. Lurie D, Aime S, Baroni S, Booth N, Broche L, Choi C-H, Davies G, Ismail S, ǑhǑgain D, Pine K (2010) Fast field-cycling magnetic resonance imaging. Compt Rend Physique 11:136-148
34. Palmer AG III (1997) Probing molecular motion by NMR. Curr Opin Struct Biol 7:732-737 (Pubitemid 27472595)
35. Pileio G, Carravata M, Levitt M (2010) Storage of nuclear magnetism as long-lived singlet order in low magnetic field. Proc Natl Acad Sci USA 107:17136-17139
36. Pu M, Fang X, Gershenson A, Redfield A, Roberts M (2009a) Correlation of vesicle binding and phospholipid dynamics with phospholipase C activity: insights into phosphatidylcholine activation and surface dilution inhibition. J Biol Chem 284:16099-16107
37. 31P NMR from 0.005 to 11.7 Tesla. Biochemistry 48:8282-88284
38. 31P NMR from 0.005 to 11.7 T. J Biol Chem 285:26916-26922
39. Raschle T, Hiller S, Etzkorn M, Wagner G (2010) Nonmicellar systems for solution NMR spectroscopy of membrane proteins. Curr Opin Struct Biol 20:471-479
40. Redfield A (2003) Shuttling device for high-resolution measurements of relaxation and related phenomena in solution at low field, using a shared commercial 500 MHz NMR instrument. Magn Reson Chem 41:753-768 (Pubitemid 37352327)
41. 31P field cycling NMR as a probe of phospholipid dynamics. J Am Chem Soc 126:13765-13777 (Pubitemid 39407255)
42. Roberts M, Redfield A (2004b) Phospholipid bilayer surface configuration probed quantitatively by 31P field-cycling NMR. Proc Natl Acad Sci USA 101:17066-17071 (Pubitemid 39627775)
43. Roberts M, Cui Q, Turner C, Case D, Redfield A (2004) Highresolution field-cycling NMR studies of a DNA octamers as a probe of phosphodiester dynamics and comparison with computer simulation. Biochemistry 43:3637-3650 (Pubitemid 38396775)
44. 31P NMR spectroscopy. Biophys J 97:132-141
45. Shi X, Shao C, Zhang X, Zambonelli C, Redfield A, Head J, Seaton B, Roberts M (2009) Modulation of Bacillus thuringiensis phos-phatidylinositol- specific phospholipase C activity by mutations in the putative dimerization interface. J Biol Chem 284:15607-15618
46. 13C field cycling NMR spectroscopy. J Am Chem Soc 131:3420-3421
47. Sousa D, Fernandes G, Marques G, Ribiero A, Sebastiaou P (2004) Novel pulsed switched power supply for a fast field cycling NMR spectrometer. Solid State NMR 25:160-166
48. Strombotne R, Hahn E (1964) Longitudinal nuclear spin-spin relaxation. Phys Rev A 133:1616-1629
49. Victor K, Kavolius Y, Bryant R (2004) Magnetic relaxation dispersion probe. J Magn Reson 171:253-257
50. Victor K, Van-Quynh A, Bryant R (2005) High frequency dynamics in hemoglobin measured by magnetic relaxation dispersion. Biophys J 88:443-454 (Pubitemid 40070690)
51. Wang Y, Chen W, Blair D, Pu M, Xu Y, Miller S, Redfield A, Chiles T, Roberts M (2008) Insights into the structural specificity of the cytotoxicity of 3-deoxy-phosphatidylinositols. J Am Chem Soc 130:7746-7755 (Pubitemid 351842138)
52. Weitekamp DP, Zax D, Zilm K, Pines A (1983) Zero field magnetic resonance. Phys Rev Lett 50:1807-1810