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Volumn 61, Issue 3, 2012, Pages 367-381

Recurrent introgression of mitochondrial DNA among hares (lepus spp.) revealed by species-tree inference and coalescent simulations

Author keywords

Coalescent simulations; discordant phylogenies; introgression; Lepus; rapid radiation; species tree inference

Indexed keywords

MITOCHONDRIAL DNA;

EID: 84860153849     PISSN: 10635157     EISSN: 1076836X     Source Type: Journal    
DOI: 10.1093/sysbio/syr114     Document Type: Article
Times cited : (97)

References (95)
  • 1
    • 65649137761 scopus 로고    scopus 로고
    • Genetic variation and phylogeography of the bank vole (Clethrionomys glareolus) in Russia with special reference to the introgression of the mtDNA of a closely related species, red-backed vole (C. rutilus)
    • Abramson N.I., Rodchenkova E.N., Kostygov A.Y. 2009. Genetic variation and phylogeography of the bank vole (Clethrionomys glareolus) in Russia with special reference to the introgression of the mtDNA of a closely related species, red-backed vole (C. rutilus). Russ. J. Genet. 45:533-545.
    • (2009) Russ. J. Genet. , vol.45 , pp. 533-545
    • Abramson, N.I.1    Rodchenkova, E.N.2    Kostygov, A.Y.3
  • 2
    • 0012989254 scopus 로고
    • Hallazgo de una liebre artica (Lepus timidus) en el yacimiento prehistorico de Urtiga (Guipuzcoa)
    • Altuna J. 1970. Hallazgo de una liebre artica (Lepus timidus) en el yacimiento prehistorico de Urtiga (Guipuzcoa). Munibe. 22:165-168.
    • (1970) Munibe , vol.22 , pp. 165-168
    • Altuna, J.1
  • 3
    • 0037387722 scopus 로고    scopus 로고
    • Ancient introgression of Lepus timidus mtDNA into L. granatensis and L. europaeus in the Iberian Peninsula
    • DOI 10.1016/S1055-7903(02)00417-7
    • Alves P.C., Ferrand N., Suchentrunk F., Harris D.J. 2003. Ancient introgression of Lepus timidus mtDNA into L. granatensis and L. europaeus in the Iberian Peninsula. Mol. Phylogenet. Evol. 27:70-80. (Pubitemid 36453113)
    • (2003) Molecular Phylogenetics and Evolution , vol.27 , Issue.1 , pp. 70-80
    • Alves, P.C.1    Ferrand, N.2    Suchentrunk, F.3    Harris, D.J.4
  • 4
    • 48749096927 scopus 로고    scopus 로고
    • Lagomorph species: Geographical distribution and conservation status
    • Alves P.C., Ferrand N., Hacklnder K., editors Berlin: Springer
    • Alves P.C., Hacklnder K. 2008. Lagomorph species: geographical distribution and conservation status. In: Alves P.C., Ferrand N., Hacklnder K., editors. Lagomorph biology: evolution, ecology, and conservation. Berlin: Springer. p. 395-406.
    • (2008) Lagomorph Biology: Evolution, Ecology, and Conservation , pp. 395-406
    • Alves, P.C.1    Hacklnder, K.2
  • 6
    • 40849087920 scopus 로고    scopus 로고
    • Evidence for genetic similarity of two allopatric European hares (Lepus corsicanus and L. castroviejoi) inferred from nuclear DNA sequences
    • Alves P.C., Melo-Ferreira J., Branco M., Suchentrunk F., Ferrand N., Harris D.J. 2008. Evidence for genetic similarity of two allopatric European hares (Lepus corsicanus and L. castroviejoi) inferred from nuclear DNA sequences. Mol. Phylogenet. Evol. 46:1191-1197.
    • (2008) Mol. Phylogenet. Evol. , vol.46 , pp. 1191-1197
    • Alves, P.C.1    Melo-Ferreira, J.2    Branco, M.3    Suchentrunk, F.4    Ferrand, N.5    Harris, D.J.6
  • 7
    • 48749115716 scopus 로고    scopus 로고
    • The ubiquitous mountain hare mitochondria: Multiple introgressive hybridization in hares, genus Lepus
    • Alves P.C., Melo-Ferreira J., Freitas H., Boursot P. 2008. The ubiquitous mountain hare mitochondria: multiple introgressive hybridization in hares, genus Lepus. Philos. Trans. R. Soc. Lond B. 363:2831-2839.
    • (2008) Philos. Trans. R. Soc. Lond B. , vol.363 , pp. 2831-2839
    • Alves, P.C.1    Melo-Ferreira, J.2    Freitas, H.3    Boursot, P.4
  • 8
    • 33846839390 scopus 로고    scopus 로고
    • Bayesian estimation of concordance among gene trees
    • DOI 10.1093/molbev/msl170
    • Lond B. 363:2831-2839. An C., Larget B., Baum D.A., Smith S.D., Rokas A. 2007. Bayesian estimation of concordance among gene trees. Mol. Biol. Evol. 24:412-426. (Pubitemid 46204374)
    • (2007) Molecular Biology and Evolution , vol.24 , Issue.2 , pp. 412-426
    • Ane, C.1    Larget, B.2    Baum, D.A.3    Smith, S.D.4    Rokas, A.5
  • 9
    • 0034926474 scopus 로고    scopus 로고
    • Distribution and status of the Apennine hare Lepus corsicanus in continental Italy and Sicily
    • DOI 10.1046/j.1365-3008.2001.00182.x
    • Angelici F.M., Luiselli L. 2001. Distribution and status of the Apennine hare Lepus corsicanus in continental Italy and Sicily. Oryx. 35:245-249. (Pubitemid 32696124)
    • (2001) ORYX , vol.35 , Issue.3 , pp. 245-249
    • Angelici, F.M.1    Luiselli, L.2
  • 11
    • 52149099649 scopus 로고    scopus 로고
    • Multilocus phylogenetics of a rapid radiation in the genus Thomomys (Rodentia: Geomyidae)
    • Belfiore N.M., Liu L., Moritz C. 2008. Multilocus phylogenetics of a rapid radiation in the genus Thomomys (Rodentia: Geomyidae). Syst. Biol. 57:294-310.
    • (2008) Syst. Biol. , vol.57 , pp. 294-310
    • Belfiore, N.M.1    Liu, L.2    Moritz, C.3
  • 12
    • 39049185515 scopus 로고    scopus 로고
    • Recurrent replacement of mtDNA and cryptic hybridization between two sibling bat species Myotis myotis and Myotis blythii
    • DOI 10.1098/rspb.2006.3680
    • Berthier P., Excoffier L., Ruedi M. 2006. Recurrent replacement of mtDNA and cryptic hybridization between two sibling bat species Myotis myotis and Myotis blythii. Proc. R. Soc. Lond. B.273:3101-3109. (Pubitemid 46622451)
    • (2006) Proceedings of the Royal Society B: Biological Sciences , vol.273 , Issue.1605 , pp. 3101-3109
    • Berthier, P.1    Excoffier, L.2    Ruedi, M.3
  • 14
    • 60249086593 scopus 로고    scopus 로고
    • Assessing natural introgression in 2 biomedical model species, the rhesus macaque (Macaca mulatta) and the long-tailed macaque (Macaca fascicularis)
    • Bonhomme M., Cuartero S., Blancher A., Crouau-Roy B. 2009. Assessing natural introgression in 2 biomedical model species, the rhesus macaque (Macaca mulatta) and the long-tailed macaque (Macaca fascicularis). J. Hered. 100:158-169.
    • (2009) J. Hered. , vol.100 , pp. 158-169
    • Bonhomme, M.1    Cuartero, S.2    Blancher, A.3    Crouau-Roy, B.4
  • 15
    • 67449158076 scopus 로고    scopus 로고
    • Gene trees reveal repeated instances of mitochondrial DNA introgression in orangethroat darters (Percidae: Etheostoma)
    • Bossu C.M., Near T.J. 2009. Gene trees reveal repeated instances of mitochondrial DNA introgression in orangethroat darters (Percidae: Etheostoma). Syst. Biol. 58:114-129.
    • (2009) Syst. Biol. , vol.58 , pp. 114-129
    • Bossu, C.M.1    Near, T.J.2
  • 16
    • 1542347067 scopus 로고    scopus 로고
    • Neighbor-Net: An agglomerative method for the construction of phylogenetic networks
    • DOI 10.1093/molbev/msh018
    • Bryant D., Moulton V. 2004. Neighbor-net: an agglomerative method for the construction of phylogenetic networks. Mol. Biol. Evol. 21:255-265. (Pubitemid 38314614)
    • (2004) Molecular Biology and Evolution , vol.21 , Issue.2 , pp. 255-265
    • Bryant, D.1    Moulton, V.2
  • 17
    • 33747338447 scopus 로고    scopus 로고
    • Differentiating between hypotheses of lineage sorting and introgression in New Zealand alpine cicadas (Maoricicada Dugdale)
    • Buckley T.R., Cordeiro M., Marshall D.C., Simon C. 2006. Differentiating between hypotheses of lineage sorting and introgression in New Zealand alpine cicadas (Maoricicada Dugdale). Syst. Biol. 55:411-425.
    • (2006) Syst. Biol. , vol.55 , pp. 411-425
    • Buckley, T.R.1    Cordeiro, M.2    Marshall, D.C.3    Simon, C.4
  • 18
    • 34548098061 scopus 로고    scopus 로고
    • Empirical study of hybrid zone movement
    • DOI 10.1038/sj.hdy.6800997, PII 6800997
    • Buggs R.J. 2007. Empirical study of hybrid zone movement. Heredity. 99:301-312. (Pubitemid 47295860)
    • (2007) Heredity , vol.99 , Issue.3 , pp. 301-312
    • Buggs, R.J.A.1
  • 19
    • 62449199004 scopus 로고    scopus 로고
    • Recombination and speciation: Loci near centromeres are more differentiated than loci near telomeres between subspecies of the European Rabbit (Oryctolagus cuniculus)
    • Carneiro M., Ferrand N., Nachman M.W. 2009. Recombination and speciation: loci near centromeres are more differentiated than loci near telomeres between subspecies of the European Rabbit (Oryctolagus cuniculus). Genetics. 181:593-606.
    • (2009) Genetics , vol.181 , pp. 593-606
    • Carneiro, M.1    Ferrand, N.2    Nachman, M.W.3
  • 21
    • 84982620864 scopus 로고
    • Relationships and origins of the European lagomorphs
    • Corbet G.B. 1986. Relationships and origins of the European lagomorphs. Mamm. Rev. 16:105-110.
    • (1986) Mamm. Rev. , vol.16 , pp. 105-110
    • Corbet, G.B.1
  • 22
    • 14044258418 scopus 로고    scopus 로고
    • Modern humans did not admix with Neanderthals during their range expansion into Europe
    • Currat M., Excoffier L. 2004. Modern humans did not admix with Neanderthals during their range expansion into Europe. PLoS Biol. 2:2264-2274.
    • (2004) PLoS Biol. , vol.2 , pp. 2264-2274
    • Currat, M.1    Excoffier, L.2
  • 23
    • 47749139699 scopus 로고    scopus 로고
    • The hidden side of invasions: Massive introgression by local genes
    • DOI 10.1111/j.1558-5646.2008.00413.x
    • Currat M., Ruedi M., Petit R.J., Excoffier L. 2008. The hidden side of invasions: massive introgression by local genes. Evolution. 62:1908-1920. (Pubitemid 352033252)
    • (2008) Evolution , vol.62 , Issue.8 , pp. 1908-1920
    • Currat, M.1    Ruedi, M.2    Petit, R.J.3    Excoffier, L.4
  • 26
    • 38649110663 scopus 로고    scopus 로고
    • BEAST: Bayesian evolutionary analysis by sampling trees
    • Drummond A.J., Rambaut A. 2007. BEAST: Bayesian evolutionary analysis by sampling trees. BMC Evol. Biol. 7:214.
    • (2007) BMC Evol. Biol. , vol.7 , pp. 214
    • Drummond, A.J.1    Rambaut, A.2
  • 27
    • 56549103832 scopus 로고    scopus 로고
    • Does gene flow destroy phylogenetic signal the performance of three methods for estimating species phylogenies in the presence of gene flow
    • Eckert A.J., Carstens B.C. 2008. Does gene flow destroy phylogenetic signal The performance of three methods for estimating species phylogenies in the presence of gene flow. Mol. Phylogenet. Evol. 49:832-842.
    • (2008) Mol. Phylogenet. Evol. , vol.49 , pp. 832-842
    • Eckert, A.J.1    Carstens, B.C.2
  • 28
    • 58249100073 scopus 로고    scopus 로고
    • Is a new and general theory of molecular systematics emerging?
    • Edwards S.V. 2009. Is a new and general theory of molecular systematics emerging? Evolution. 63:1-19.
    • (2009) Evolution , vol.63 , pp. 1-19
    • Edwards, S.V.1
  • 31
    • 33747401249 scopus 로고    scopus 로고
    • Phase determination from direct sequencing of length-variable DNA regions
    • Flot J.F., Tillier A., Samadi S., Tillier S. 2006. Phase determination from direct sequencing of length-variable DNA regions. Mol. Ecol. Notes. 6:627-638.
    • (2006) Mol. Ecol. Notes. , vol.6 , pp. 627-638
    • Flot, J.F.1    Tillier, A.2    Samadi, S.3    Tillier, S.4
  • 33
    • 33751233544 scopus 로고    scopus 로고
    • Introgression of mountain hare (Lepus timidus) mitochondrial DNA into wild brown hares (Lepus europaeus) in Denmark
    • Fredsted T., Wincentz T., Villesen P. 2006. Introgression of mountain hare (Lepus timidus) mitochondrial DNA into wild brown hares (Lepus europaeus) in Denmark. BMC Ecol. 6:17.
    • (2006) BMC Ecol. , vol.6 , pp. 17
    • Fredsted, T.1    Wincentz, T.2    Villesen, P.3
  • 34
    • 0842322955 scopus 로고    scopus 로고
    • Species-level paraphyly and polyphyly: Frequency, causes, and consequences, with insights from animal mitochondrial DNA
    • Funk D.J., Omland K.E. 2003. Species-level paraphyly and polyphyly: frequency, causes, and consequences, with insights from animal mitochondrial DNA. Annu. Rev. Ecol. Syst. 34:397-423. (Pubitemid 38171425)
    • (2003) Annual Review of Ecology, Evolution, and Systematics , vol.34 , pp. 397-423
    • Funk, D.J.1    Omland, K.E.2
  • 35
    • 77951536651 scopus 로고    scopus 로고
    • Nuclear gene phylogeography using PHASE: Dealing with unresolved genotypes, lost alleles, and systematic bias in parameter estimation
    • Garrick R.C., Sunnucks P., Dyer R.J. 2010. Nuclear gene phylogeography using PHASE: dealing with unresolved genotypes, lost alleles, and systematic bias in parameter estimation. BMC Evol. Biol. 10:118.
    • (2010) BMC Evol. Biol. , vol.10 , pp. 118
    • Garrick, R.C.1    Sunnucks, P.2    Dyer, R.J.3
  • 36
    • 34447282261 scopus 로고    scopus 로고
    • Seeing the trees for the network: Consensus, information content, and superphylogenies
    • Gauthier O., Lapointe F.J. 2007. Seeing the trees for the network: consensus, information content, and superphylogenies. Syst. Biol. 56:345-355.
    • (2007) Syst. Biol. , vol.56 , pp. 345-355
    • Gauthier, O.1    Lapointe, F.J.2
  • 37
    • 57349140938 scopus 로고    scopus 로고
    • Inferring the history of speciation in house mice from autosomal, X-linked, Y-linked and mitochondrial genes
    • Geraldes A., Basset P., Gibson B., Smith K.L., Harr B., Yu H.T., Bulatova N., Ziv Y., Nachman M.W. 2008. Inferring the history of speciation in house mice from autosomal, X-linked, Y-linked and mitochondrial genes. Mol. Ecol. 17:5349-5363.
    • (2008) Mol. Ecol. , vol.17 , pp. 5349-5363
    • Geraldes, A.1    Basset, P.2    Gibson, B.3    Smith, K.L.4    Harr, B.5    Yu, H.T.6    Bulatova, N.7    Ziv, Y.8    Nachman, M.W.9
  • 38
    • 0032102497 scopus 로고    scopus 로고
    • The complete mitochondrial DNA sequence of the rabbit, Oryctolagus cuniculus
    • DOI 10.1006/geno.1998.5282
    • Gissi C., Gullberg A., Arnason U. 1998. The complete mitochondrial DNA sequence of the rabbit, Oryctolagus cuniculus. Genomics. 50:161-169. (Pubitemid 28303510)
    • (1998) Genomics , vol.50 , Issue.2 , pp. 161-169
    • Gissi, C.1    Gullberg, A.2    Arnason, U.3
  • 39
    • 0022376704 scopus 로고
    • Dating of the human-ape splitting by a molecular clock of mitochondrial DNA
    • DOI 10.1007/BF02101694
    • Hasegawa M., Kishino H., Yano T. 1985. Dating of the human-ape splitting by a molecular clock of mitochondrial DNA. J. Mol. Evol. 22:160-174. (Pubitemid 16227864)
    • (1985) Journal of Molecular Evolution , vol.22 , Issue.2 , pp. 160-174
    • Hasegawa, M.1    Kishino, H.2    Yano, T.3
  • 40
    • 77249086587 scopus 로고    scopus 로고
    • Bayesian inference of species trees from multilocus data
    • Heled J., Drummond A.J. 2010. Bayesian inference of species trees from multilocus data. Mol. Biol. Evol. 27:570-580.
    • (2010) Mol. Biol. Evol. , vol.27 , pp. 570-580
    • Heled, J.1    Drummond, A.J.2
  • 41
    • 0035047175 scopus 로고    scopus 로고
    • Speciation, hybrid zones and phylogeography - Or seeing genes in space and time
    • DOI 10.1046/j.1365-294X.2001.01202.x
    • Hewitt G.M. 2001. Speciation, hybrid zones and phylogeography-or seeing genes in space and time. Mol. Ecol. 10:537-549. (Pubitemid 32406341)
    • (2001) Molecular Ecology , vol.10 , Issue.3 , pp. 537-549
    • Hewitt, G.M.1
  • 43
    • 79955871911 scopus 로고    scopus 로고
    • Quaternary phylogeography: The roots of hybrid zones
    • Hewitt G.M. 2011. Quaternary phylogeography: the roots of hybrid zones. Genetica. 139:617-638.
    • (2011) Genetica , vol.139 , pp. 617-638
    • Hewitt, G.M.1
  • 44
    • 77952297997 scopus 로고    scopus 로고
    • The divergence of chimpanzee species and subspecies as revealed in multipopulation isolation-with-migration analyses
    • Hey J. 2009. The divergence of chimpanzee species and subspecies as revealed in multipopulation isolation-with-migration analyses. Mol. Biol. Evol. 27:921-933.
    • (2009) Mol. Biol. Evol. , vol.27 , pp. 921-933
    • Hey, J.1
  • 45
    • 77952294620 scopus 로고    scopus 로고
    • Isolation with migration models for more than two populations
    • Hey J. 2010. Isolation with migration models for more than two populations. Mol. Biol. Evol. 27:905-920.
    • (2010) Mol. Biol. Evol. , vol.27 , pp. 905-920
    • Hey, J.1
  • 46
    • 3142714474 scopus 로고    scopus 로고
    • Multilocus methods for estimating population sizes, migration rates and divergence time, with applications to the divergence of Drosophila pseudoobscura and D. persimilis
    • DOI 10.1534/genetics.103.024182
    • Hey J., Nielsen R. 2004. Multilocus methods for estimating population sizes, migration rates and divergence time, with applications to the divergence of Drosophila pseudoobscura and D. persimilis. Genetics. 167:747-760. (Pubitemid 38931862)
    • (2004) Genetics , vol.167 , Issue.2 , pp. 747-760
    • Hey, J.1    Nielsen, R.2
  • 47
    • 33750418625 scopus 로고    scopus 로고
    • Maximum likelihood of phylogenetic networks
    • DOI 10.1093/bioinformatics/btl452
    • Jin G., Nakhleh L., Snir S., Tuller T. 2006. Maximum likelihood of phylogenetic networks. Bioinformatics. 22:2604-2611. (Pubitemid 44642598)
    • (2006) Bioinformatics , vol.22 , Issue.21 , pp. 2604-2611
    • Jin, G.1    Nakhleh, L.2    Snir, S.3    Tuller, T.4
  • 48
    • 70149100417 scopus 로고    scopus 로고
    • A statistical approach for distinguishing hybridization and incomplete lineage sorting
    • Joly S., McLenachan P.A., Lockhart P.J. 2009. A statistical approach for distinguishing hybridization and incomplete lineage sorting. Am. Nat. 174:E54-E70.
    • (2009) Am. Nat. , vol.174
    • Joly, S.1    McLenachan, P.A.2    Lockhart, P.J.3
  • 49
    • 0014494672 scopus 로고
    • The number of heterozygous nucleotide sites maintained in a finite population due to steady flux of mutations
    • Kimura M. 1969. The number of heterozygous nucleotide sites maintained in a finite population due to steady flux of mutations. Genetics. 61:893-903.
    • (1969) Genetics , vol.61 , pp. 893-903
    • Kimura, M.1
  • 50
    • 70450277249 scopus 로고    scopus 로고
    • Identifying hybridization events in the presence of coalescence via model selection
    • Kubatko L.S. 2009. Identifying hybridization events in the presence of coalescence via model selection. Syst. Biol. 58:478-488.
    • (2009) Syst. Biol. , vol.58 , pp. 478-488
    • Kubatko, L.S.1
  • 51
    • 33847302458 scopus 로고    scopus 로고
    • Inconsistency of phylogenetic estimates from concatenated data under coalescence
    • Kubatko L.S., Degnan J.H. 2007. Inconsistency of phylogenetic estimates from concatenated data under coalescence. Syst. Biol. 56:17-24.
    • (2007) Syst. Biol. , vol.56 , pp. 17-24
    • Kubatko, L.S.1    Degnan, J.H.2
  • 52
    • 7244221627 scopus 로고    scopus 로고
    • SIMCOAL 2.0: A program to simulate genomic diversity over large recombining regions in a subdivided population with a complex history
    • DOI 10.1093/bioinformatics/bth264
    • Laval G., Excoffier L. 2004. SIMCOAL 2.0: a program to simulate genomic diversity over large recombining regions in a subdivided population with a complex history. Bioinformatics. 20: 2485-2487. (Pubitemid 39429927)
    • (2004) Bioinformatics , vol.20 , Issue.15 , pp. 2485-2487
    • Laval, G.1    Excoffier, L.2
  • 53
    • 0041888417 scopus 로고
    • Les lagomorphs (Mammalia) du plistoc̀ene suprieur de Jaurens
    • Lopez-Martinez N. 1980. Les lagomorphs (Mammalia) du plistoc̀ene suprieur de Jaurens. Nouv. Arch. Mus. Hist. Nat. Lyon. 18:5-16.
    • (1980) Nouv. Arch. Mus. Hist. Nat. Lyon. , vol.18 , pp. 5-16
    • Lopez-Martinez, N.1
  • 54
    • 64649095562 scopus 로고    scopus 로고
    • The lagomorph fossil record and the origin of the European rabbit
    • Alves P. C., Ferrand N., Hacklnder K., editors Berlin: Springer-Verlag
    • Lopez-Martinez N. 2008. The lagomorph fossil record and the origin of the European rabbit. In: Alves P. C., Ferrand N., Hacklnder K., editors. Lagomorph biology: evolution, ecology, and conservation. Berlin: Springer-Verlag. p. 27-46.
    • (2008) Lagomorph Biology: Evolution, Ecology, and Conservation , pp. 27-46
    • Lopez-Martinez, N.1
  • 56
    • 0028995647 scopus 로고
    • Survival pattern of European hare in a decreasing population
    • Marboutin E., Peroux R. 1995. Survival pattern of European hare in a decreasing population. J. Appl. Ecol. 32:809-816. (Pubitemid 3015844)
    • (1995) Journal of Applied Ecology , vol.32 , Issue.4 , pp. 809-816
    • Marboutin, E.1    Peroux, R.2
  • 57
    • 3242703950 scopus 로고    scopus 로고
    • A molecular supermatrix of the rabbits and hares (Leporidae) allows for the identification of five intercontinental exchanges during the Miocene
    • DOI 10.1080/10635150490445715
    • Matthee C.A., van Vuuren B.J., Bell D., Robinson T.J. 2004. A molecular supermatrix of the rabbits and hares (Leporidae) allows for the identification of five intercontinental exchanges during the Miocene. Syst. Biol. 53:433-447. (Pubitemid 38946907)
    • (2004) Systematic Biology , vol.53 , Issue.3 , pp. 433-447
    • Matthee, C.A.1    Jansen Van Vuuren, B.2    Bell, D.3    Robinson, T.J.4
  • 58
    • 70450265498 scopus 로고    scopus 로고
    • Maximum likelihood estimates of species trees: How accuracy of phylogenetic inference depends upon the divergence history and sampling design
    • McCormack J.E., Huang H., Knowles L.L. 2009. Maximum likelihood estimates of species trees: how accuracy of phylogenetic inference depends upon the divergence history and sampling design. Syst. Biol. 58:501-508.
    • (2009) Syst. Biol. , vol.58 , pp. 501-508
    • McCormack, J.E.1    Huang, H.2    Knowles, L.L.3
  • 59
    • 66749101639 scopus 로고    scopus 로고
    • The genomic legacy from the extinct Lepus timidus to the three hare species of Iberia: Contrast between mtDNA, sex chromosomes and autosomes
    • Melo-Ferreira J., Alves P.C., Freitas H., Ferrand N., Boursot P. 2009. The genomic legacy from the extinct Lepus timidus to the three hare species of Iberia: contrast between mtDNA, sex chromosomes and autosomes. Mol. Ecol. 18:2643-2658.
    • (2009) Mol. Ecol. , vol.18 , pp. 2643-2658
    • Melo-Ferreira, J.1    Alves, P.C.2    Freitas, H.3    Ferrand, N.4    Boursot, P.5
  • 60
    • 79959975893 scopus 로고    scopus 로고
    • Interspecific X-chromosome and mitochondrial DNA introgression in the Iberian hare: Selection or allele surfing?
    • Melo-Ferreira J., Alves P.C., Rocha J., Ferrand N., Boursot P. 2011. Interspecific X-chromosome and mitochondrial DNA introgression in the Iberian hare: selection or allele surfing? Evolution. 65: 1956-1968.
    • (2011) Evolution , vol.65 , pp. 1956-1968
    • Melo-Ferreira, J.1    Alves, P.C.2    Rocha, J.3    Ferrand, N.4    Boursot, P.5
  • 61
    • 33846560358 scopus 로고    scopus 로고
    • The rise and fall of the mountain hare (Lepus timidus) during Pleistocene glaciations: Expansion and retreat with hybridization in the Iberian Peninsula
    • DOI 10.1111/j.1365-294X.2006.03166.x
    • Melo-Ferreira J., Boursot P., Randi E., Kryukov A., Suchentrunk F., Ferrand N., Alves P.C. 2007. The rise and fall of the mountain hare (Lepus timidus) during Pleistocene glaciations: expansion and retreat with hybridization in the Iberian Peninsula. Mol. Ecol. 16:605-618. (Pubitemid 46161082)
    • (2007) Molecular Ecology , vol.16 , Issue.3 , pp. 605-618
    • Melo-Ferreira, J.1    Boursot, P.2    Randi, E.3    Kryukov, A.4    Suchentrunk, F.5    Ferrand, N.6    Alves, P.C.7
  • 62
    • 21244445043 scopus 로고    scopus 로고
    • Invasion from the cold past: Extensive introgression of mountain hare (Lepus timidus) mitochondrial DNA into three other hare species in northern Iberia
    • DOI 10.1111/j.1365-294X.2005.02599.x
    • Melo-Ferreira J., Boursot P., Suchentrunk F., Ferrand N., Alves P.C. 2005. Invasion from the cold past: extensive introgression of mountain hare (Lepus timidus) mitochondrial DNA into three other hare species in northern Iberia. Mol. Ecol. 14:2459-2464. (Pubitemid 40886043)
    • (2005) Molecular Ecology , vol.14 , Issue.8 , pp. 2459-2464
    • Melo-Ferreira, J.1    Boursot, P.2    Suchentrunk, F.3    Ferrand, N.4    Alves, P.C.5
  • 64
    • 0000058501 scopus 로고
    • Inferring phylogenies from mtDNA variation-mitochondrial-gene trees versus nuclear-gene trees
    • Moore W.S. 1995. Inferring phylogenies from mtDNA variation- mitochondrial-gene trees versus nuclear-gene trees. Evolution. 49:718-726.
    • (1995) Evolution , vol.49 , pp. 718-726
    • Moore, W.S.1
  • 66
    • 0034967295 scopus 로고    scopus 로고
    • Distinguishing migration from isolation: A Markov chain Monte Carlo approach
    • Nielsen R., Wakeley J. 2001. Distinguishing migration from isolation: a Markov chain Monte Carlo approach. Genetics. 158:885-896. (Pubitemid 32552323)
    • (2001) Genetics , vol.158 , Issue.2 , pp. 885-896
    • Nielsen, R.1    Wakeley, J.2
  • 68
    • 0033226624 scopus 로고    scopus 로고
    • Species distinction and evolutionary relationships of the Italian hare (Lepus corsicanus) as described by mitochondrial DNA sequencing
    • DOI 10.1046/j.1365-294X.1999.00766.x
    • Pierpaoli M., Riga F., Trocchi V., Randi E. 1999. Species distinction and evolutionary relationships of the Italian hare (Lepus corsicanus) as described by mitochondrial DNA sequencing. Mol. Ecol. 8:1805-1817. (Pubitemid 30033754)
    • (1999) Molecular Ecology , vol.8 , Issue.11 , pp. 1805-1817
    • Pierpaoli, M.1    Riga, F.2    Trocchi, V.3    Randi, E.4
  • 69
    • 79952809938 scopus 로고    scopus 로고
    • Hares in Corsica: High prevalence of Lepus corsicanus and hybridization with introduced L. europaeus and L. granatensis
    • Pietri C., Alves P.C., Melo-Ferreira J. 2011. Hares in Corsica: high prevalence of Lepus corsicanus and hybridization with introduced L. europaeus and L. granatensis. Eur. J.Wildl. Res. 52:313-321.
    • (2011) Eur. J.Wildl. Res. , vol.52 , pp. 313-321
    • Pietri, C.1    Alves, P.C.2    Melo-Ferreira, J.3
  • 70
    • 45849154165 scopus 로고    scopus 로고
    • JModelTest: Phylogenetic model averaging
    • DOI 10.1093/molbev/msn083
    • Posada D. 2008. jModelTest: phylogenetic model averaging. Mol. Biol. Evol. 25:1253-1256. (Pubitemid 351882013)
    • (2008) Molecular Biology and Evolution , vol.25 , Issue.7 , pp. 1253-1256
    • Posada, D.1
  • 72
    • 33744815936 scopus 로고    scopus 로고
    • Phylogeny and evolutionary origins of the Leporidae: A review of cytogenetics, molecular analyses and a supermatrix analysis
    • DOI 10.1111/j.1365-2907.2005.00073.x
    • Robinson T.J., Matthee C.A. 2005. Phylogeny and evolutionary origins of the Leporidae: a review of cytogenetics, molecular analyses and a supermatrix analysis. Mamm. Rev. 35:231-247. (Pubitemid 43834903)
    • (2005) Mammal Review , vol.35 , Issue.3-4 , pp. 231-247
    • Robinson, T.J.1    Matthee, C.A.2
  • 73
    • 11244270692 scopus 로고    scopus 로고
    • Cytonuclear genomic dissociation in African elephant species
    • DOI 10.1038/ng1485
    • Roca A.L., Georgiadis N., O'Brien S.J. 2005. Cytonuclear genomic dissociation in African elephant species. Nat. Genet. 37:96-100. (Pubitemid 40070946)
    • (2005) Nature Genetics , vol.37 , Issue.1 , pp. 96-100
    • Roca, A.L.1    Georgiadis, N.2    O'Brien, S.J.3
  • 74
    • 0031149087 scopus 로고    scopus 로고
    • Phylogenetic evidence of mitochondrial DNA introgression among pocket gophers in New Mexico (family geomyidae)
    • Ruedi M., Smith M.F., Patton J.L. 1997. Phylogenetic evidence of mitochondrial DNA introgression among pocket gophers in New Mexico (family Geomyidae). Mol. Ecol. 6:453-462. (Pubitemid 27210832)
    • (1997) Molecular Ecology , vol.6 , Issue.5 , pp. 453-462
    • Ruedi, M.1    Smith, M.F.2    Patton, J.L.3
  • 76
    • 0032766857 scopus 로고    scopus 로고
    • Multiple comparisons of log-likelihoods with applications to phylogenetic inference
    • Shimodaira H., Hasegawa M. 1999. Multiple comparisons of loglikelihoods with applications to phylogenetic inference. Mol. Biol. Evol. 16:1114-1116. (Pubitemid 29368141)
    • (1999) Molecular Biology and Evolution , vol.16 , Issue.8 , pp. 1114-1116
    • Shimodaira, H.1    Hasegawa, M.2
  • 77
    • 67449151608 scopus 로고    scopus 로고
    • Conflicting mitochondrial and nuclear phylogenies for the widely disjunct ewmys (Testudines: Emydidae) species complex, and what they tell us about biogeography and hybridization
    • Spinks P.Q., Shaffer H.B. 2009. Conflicting mitochondrial and nuclear phylogenies for the widely disjunct ewmys (Testudines: Emydidae) species complex, and what they tell us about biogeography and hybridization. Syst. Biol. 58:1-20.
    • (2009) Syst. Biol. , vol.58 , pp. 1-20
    • Spinks, P.Q.1    Shaffer, H.B.2
  • 78
    • 0242691208 scopus 로고    scopus 로고
    • A comparison of bayesian methods for haplotype reconstruction from population genotype data
    • DOI 10.1086/379378
    • Stephens M., Donnelly P. 2003. A comparison of Bayesian methods for haplotype reconstruction from population genotype data. Am. J. Hum. Genet. 73:1162-1169. (Pubitemid 37414228)
    • (2003) American Journal of Human Genetics , vol.73 , Issue.5 , pp. 1162-1169
    • Stephens, M.1    Donnelly, P.2
  • 79
    • 0035071957 scopus 로고    scopus 로고
    • A new statistical method for haplotype reconstruction from population data
    • DOI 10.1086/319501
    • Stephens M., Smith N.J., Donnelly P. 2001. A new statistical method for haplotype reconstruction from population data. Am. J. Hum. Genet. 68:978-989. (Pubitemid 32289743)
    • (2001) American Journal of Human Genetics , vol.68 , Issue.4 , pp. 978-989
    • Stephens, M.1    Smith, N.J.2    Donnelly, P.3
  • 80
    • 65949110584 scopus 로고    scopus 로고
    • Divergence population genetic analysis of hybridization between rhesus and cynomolgus macaques
    • Stevison L.S., Kohn M.H. 2009. Divergence population genetic analysis of hybridization between rhesus and cynomolgus macaques. Mol. Ecol. 18:2457-2475.
    • (2009) Mol. Ecol. , vol.18 , pp. 2457-2475
    • Stevison, L.S.1    Kohn, M.H.2
  • 81
    • 74549151043 scopus 로고    scopus 로고
    • How robust are "isolation with Migration" analyses to violations of the im model A simulation study
    • Strasburg J.L., Rieseberg L.H. 2010. How robust are "Isolation with Migration" analyses to violations of the IM model A simulation study. Mol. Biol. Evol. 27:297-310.
    • (2010) Mol. Biol. Evol. , vol.27 , pp. 297-310
    • Strasburg, J.L.1    Rieseberg, L.H.2
  • 82
    • 40849134778 scopus 로고    scopus 로고
    • Introgressive hybridization in wild living mountain hares (L. timidus varronis) and brown hares (L. europaeus) and morphological consequences
    • Suchentrunk F., Mamuris Z., Stamatis C., Ben Slimen H., Hacklnder K., Haerer G., Giacometti M. 2005. Introgressive hybridization in wild living mountain hares (L. timidus varronis) and brown hares (L. europaeus) and morphological consequences. Mamm. Biol. 70(Suppl.):39-40.
    • (2005) Mamm. Biol. , vol.70 , Issue.SUPPL. , pp. 39-40
    • Suchentrunk, F.1    Mamuris, Z.2    Stamatis, C.3    Ben Slimen, H.4    Hacklnder, K.5    Haerer, G.6    Giacometti, M.7
  • 84
    • 0023075999 scopus 로고
    • Transfer of mitochondrial DNA from the northern red-backed vole (Clethrionomys rutilus) to the bank vole (C. glareolus)
    • Tegelstrm H. 1987. Transfer of mitochondrial DNA from the northern red-backed vole (Clethrionomys rutilus) to the bank vole (C. glareolus). J. Mol. Evol. 24:218-227.
    • (1987) J. Mol. Evol. , vol.24 , pp. 218-227
    • Tegelstrm, H.1
  • 85
    • 0027968068 scopus 로고
    • CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • Thompson J.D., Higgins D.G., Gibson T.J. 1994. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22:4673-4680. (Pubitemid 24354800)
    • (1994) Nucleic Acids Research , vol.22 , Issue.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 86
    • 33846547212 scopus 로고    scopus 로고
    • Introgression from Lepus europaeus to L. timidus in Russia revealed by mitochondrial single nucleotide polymorphisms and nuclear microsatellites
    • Thulin C.G., Fang M., Averianov A.O. 2006. Introgression from Lepus europaeus to L. timidus in Russia revealed by mitochondrial single nucleotide polymorphisms and nuclear microsatellites. Hereditas. 143:68-76. (Pubitemid 46710776)
    • (2006) Hereditas , vol.143 , Issue.2006 , pp. 68-76
    • Thulin, C.-G.1    Fang, M.2    Averianov, A.O.3
  • 87
    • 0031148798 scopus 로고    scopus 로고
    • The occurrence of mountain hare mitochondrial DNA in wild brown hares
    • Thulin C.G., Jaarola M., Tegelstrom H. 1997. The occurrence of mountain hare mitochondrial DNA in wild brown hares. Mol. Ecol. 6:463-467. (Pubitemid 27210833)
    • (1997) Molecular Ecology , vol.6 , Issue.5 , pp. 463-467
    • Thulin, C.-G.1    Jaarola, M.2    Tegelstrom, H.3
  • 88
    • 0034904148 scopus 로고    scopus 로고
    • Non-invasive PCR sexing of rabbits (Oryctolagus cuniculus) and hares (Lepus europaeus)
    • Wallner B., Huber S., Achmann R. 2001. Non-invasive PCR sexing of rabbits (Oryctolagus cuniculus) and hares (Lepus europaeus). Mamm. Biol. 66:190-192.
    • (2001) Mamm. Biol. , vol.66 , pp. 190-192
    • Wallner, B.1    Huber, S.2    Achmann, R.3
  • 89
    • 26944486689 scopus 로고    scopus 로고
    • Hares on ice: Phylogeography and historical demographics of Lepus arcticus, L. othus, and L. timidus (Mammalia: Lagomorpha)
    • Waltari E., Cook J.A. 2005. Hares on ice: phylogeography and historical demographics of Lepus arcticus, L. othus, and L. timidus (Mammalia: Lagomorpha). Mol. Ecol. 14:3005-3016.
    • (2005) Mol. Ecol. , vol.14 , pp. 3005-3016
    • Waltari, E.1    Cook, J.A.2
  • 92
    • 34547863856 scopus 로고    scopus 로고
    • Recombination-filtered genomic datasets by information maximization
    • DOI 10.1093/bioinformatics/btm253
    • Woerner A.E., Cox M.P., Hammer M.F. 2007. Recombination-filtered genomic datasets by information maximization. Bioinformatics. 23:1851-1853. (Pubitemid 47250325)
    • (2007) Bioinformatics , vol.23 , Issue.14 , pp. 1851-1853
    • Woerner, A.E.1    Cox, M.P.2    Hammer, M.F.3
  • 93
    • 12344265079 scopus 로고    scopus 로고
    • Divergence population genetics of chimpanzees
    • DOI 10.1093/molbev/msi017
    • Won Y.J., Hey J. 2005. Divergence population genetics of chimpanzees. Mol. Biol. Evol. 22:297-307. (Pubitemid 40130197)
    • (2005) Molecular Biology and Evolution , vol.22 , Issue.2 , pp. 297-307
    • Won, Y.-J.1    Hey, J.2
  • 94
    • 0035989603 scopus 로고    scopus 로고
    • Molecular phylogeny of Japanese Leporidae, the amami rabbit Pentalagus furnessi, the Japanese hare Lepus brachyurus, and the mountain hare Lepus timidus, inferred from mitochondrial DNA sequences
    • DOI 10.1266/ggs.77.107
    • Yamada F., Takaki M., Suzuki H. 2002. Molecular phylogeny of Japanese Leporidae, the Amami rabbit Pentalagus furnessi, the Japanese hare Lepus brachyurus, and the mountain hare Lepus timidus, inferred from mitochondrial DNA sequences. Genes Genet. Syst. 77:107-116. (Pubitemid 34742235)
    • (2002) Genes and Genetic Systems , vol.77 , Issue.2 , pp. 107-116
    • Yamada, F.1    Takaki, M.2    Suzuki, H.3


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