A proteomics performance standard to support measurement quality in proteomics

Proteomics

Volumn 12, Issue 7, 2012, Pages 923-931

  Beasley Green, Ashley ^a   Bunk, David ^a   Rudnick, Paul ^a   Kilpatrick, Lisa ^a   Phinney, Karen ^a  

^a NATIONAL INSTITUTE OF STANDARDS AND TECHNOLOGY   (United States)

Author keywords

Liquid chromatography tandem MS; Quality control material; Reference material; Technology

Indexed keywords

PROTEOME;

ACCURACY; ARTICLE; DATA ANALYSIS; EUKARYOTE; INSTRUMENTATION; MASS SPECTROMETRY; MEASUREMENT; NONHUMAN; PRIORITY JOURNAL; PROCESS OPTIMIZATION; PROTEOMICS; QUALITY CONTROL; QUANTITATIVE ANALYSIS; REPRODUCIBILITY; SACCHAROMYCES CEREVISIAE; STANDARD; TANDEM MASS SPECTROMETRY; TECHNOLOGY; YEAST;

CHROMATOGRAPHY, LIQUID; FUNGAL PROTEINS; PROTEOME; PROTEOMICS; REFERENCE STANDARDS; REPRODUCIBILITY OF RESULTS; SACCHAROMYCES CEREVISIAE; TANDEM MASS SPECTROMETRY;

EID: 84859987789     PISSN: 16159853     EISSN: 16159861     Source Type: Journal    
DOI: 10.1002/pmic.201100522     Document Type: Article

References (17)

1. Azarkan, M., Huet, J., Baeyens-Volant, D., Looze, Y., Vandenbussche, G., Affinity chromatography: a useful tool in proteomics studies. J. Chromatogr. B Analyt. Technol. Biomed. Life Sci. 2007, 849, 81-90.
2. Pierce, J. D., Fakhari, M., Works, K. V., Pierce, J. T., Clancy, R. L., Understanding proteomics. Nurs. Health Sci. 2007, 9, 54-60.
3. Zetterberg, H., Ruetschi, U., Portelius, E., Brinkmalm, G. et al., Clinical proteomics in neurodegenerative disorders. Acta Neurol. Scand. 2008, 118, 1-11.
4. Paulovich, A. G., Billheimer, D., Ham, A. J., Vega-Montoto, L. et al., Interlaboratory study characterizing a yeast performance standard for benchmarking LC-MS platform performance. Mol. Cell. Proteomics 2010, 9, 242-254.
5. Rudnick, P. A., Clauser, K. R., Kilpatrick, L. E., Tchekhovskoi, D. V. et al., Performance metrics for liquid chromatography-tandem mass spectrometry systems in proteomics analyses. Mol. Cell. Proteomics 2010, 9, 225-241.
6. Ghaemmaghami, S., Huh, W. K., Bower, K., Howson, R. W. et al., Global Analysis of protein expression in yeast. Nature 2003, 425, 737-741.
7. Wohlschlegel, J. A., Yates, J. R., Proteomics: where's Waldo in yeast? Nature 2003, 425, 671-672.
8. Goffeau, A., Barrell, B. G., Bussey, H., Davis, R. W. et al., Life with 6000 genes. Science 1996, 274, 546, 563-567.
9. de Godoy, L. M., Olsen, J. V., de Souza, G. A. et al., Status of complete proteome analysis by mass spectrometry: SILAC labeled yeast as a model system. Genome Biol. 2006, 7, R50.
10. Shevchenko, A., Jensen, O. N., Podtelejnikov, A. V., Sagliocco, F. et al., Linking genome and proteome by mass spectrometry: large-scale identification of yeast proteins from two dimensional gels. Proc. Natl. Acad. Sci. USA 1996, 93, 14440-14445.
11. Peng, J., Elias, J. E., Thoreen, C. C., Licklider, L. J., Gygi, S. P., Evaluation of multidimensional chromatography coupled with tandem mass spectrometry (LC/LC-MS/MS) for large-scale protein analysis: the yeast proteome. J. Proteome Res. 2003, 2, 43-50.
12. Picotti, P., Bodenmiller, B., Mueller, L. N., Domon, B., Aebersold, R., Full dynamic range proteome analysis of S. cervisiae by targeted proteomics. Cell 2009, 138, 795-806.
13. Bunk, D. M., Design considerations for proteomic reference materials. Proteomics 2010, 10, 4220-4225.
14. ® 8323 Yeast Protein Extract. ().
15. Chandramouli, K., Qian, P. Y., Proteomics: challenges, techniques and possibilities to overcome biological sample complexity. Hum. Genomics Proteomics 2009, 2009, Pii, 239204.
16. Reddy, P. M., Hsu, W. Y., Hu, J. F., Ho, Y. P., Digestion completeness of microwave-assisted and conventional trypsin-catalyzed reactions. J. Am. Soc. Mass Spectrom. 2010, 21, 421-424.
17. Pramanik, B. N., Mirza, U. A., Ing, Y. H., Liu, Y. H. et al., Microwave-enhanced enzyme reaction for protein mapping by mass spectrometry: a new approach to protein digestion in minutes. Protein Sci. 2002, 11, 2676-2687.