Ancient DNA reveals kinship burial patterns of a pre-Columbian Andean community

BMC Genetics

Volumn 13, Issue , 2012, Pages

  Baca, Mateusz ^a   Doan, Karolina ^a   Sobczyk, Maciej ^a   Stankovic, Anna ^a,b   Wegleński, Piotr ^b,c  

^a UNIVERSITY OF WARSAW   (Poland)

^b INSTITUTE OF BIOCHEMISTRY AND BIOPHYSICS   (Poland)

^c UNIVERSITY OF WARSAW   (Poland)

Author keywords

[No Author keywords available]

Indexed keywords

MITOCHONDRIAL DNA;

ARTICLE; AUTOSOME; COLOMBIA; CONTROLLED STUDY; DEMOGRAPHY; DNA FINGERPRINTING; DNA SEQUENCE; FEMALE; HUMAN; HUMAN TISSUE; KIN SELECTION; MALE; MICROSATELLITE MARKER; MOLECULAR PHYLOGENY; POPULATION GENETICS; POSTHUMOUS CARE; SOCIAL STRUCTURE; Y CHROMOSOME;

ARCHAEOLOGY; BURIAL; DNA; DNA, MITOCHONDRIAL; FAMILY; GENETICS, POPULATION; HUMANS; INDIANS, SOUTH AMERICAN; MALE; MICROSATELLITE REPEATS; PERU;

EID: 84859929365     PISSN: None     EISSN: 14712156     Source Type: Journal    
DOI: 10.1186/1471-2156-13-30     Document Type: Article

References (63)

1. Lalueza C. Lack of founding Amerindian mitochondrial DNA lineages in extinct aborigines from Tierra del Fuego-Patagonia. Hum Mol Genet 1997, 6:41-46. 10.1093/hmg/6.1.41, 9002668.
2. Kemp BM, Tung TA, Summar ML. Genetic continuity after the collapse of the Wari empire: mitochondrial DNA profiles from Wari and post-Wari populations in the ancient Andes. Am J Phys Anthropol 2009, 140:80-91. 10.1002/ajpa.21037, 19294741.
3. Lewis CM. Difficulties in rejecting a local ancestry with mtDNA Haplogroup data in the South Central Andes. Latin American antiquity 2009,
4. Moraga M, Santoro CM, Standen VG, Carvallo P, Rothhammer F. Microevolution in prehistoric Andean populations: chronologic mtDNA variation in the desert valleys of northern Chile. Am J Phys Anthropol 2005, 127:170-181. 10.1002/ajpa.10438, 15503344.
5. Fehren-Schmitz L, Reindel M, Cagigao ET, Hummel S, Herrmann B. Pre-Columbian population dynamics in coastal southern Peru: A diachronic investigation of mtDNA patterns in the Palpa region by ancient DNA analysis. Am J Phys Anthropol 2010, 141:208-221.
6. Fehren-Schmitz L, Warnberg O, Reindel M, et al. Diachronic investigations of mitochondrial and Y-chromosomal genetic markers in pre-Columbian Andean highlanders from South Peru. Ann Hum Genet 2011, 75:266-283.
7. Keyser-Tracqui C. Nuclear and mitochondrial DNA analysis of a 2,000-year-old necropolis in the Egyin Gol Valley of Mongolia. Am J Hum Genet 2003, 73(2):247-260. 10.1086/377005, 1180365, 12858290.
8. Haak W, Brandt G. Ancient DNA, Strontium isotopes, and osteological analyses shed light on social and kinship organization of the Later Stone Age. Proc Natl Acad Sci U S A 2008, 105(47):18226-18231. 10.1073/pnas.0807592105, 2587582, 19015520.
9. Zuidema R. Andean Kinship. Andean Kinship and A Marriage, Special Publication No. 7 281, 240. American Anthropological Association, Washington, DC, Marriage A, Bolton R, Mayer E.
10. Klein H. Haciendas and ayllus: rural society in the Bolivian Andes in the eighteenth and nineteenth centuries 1993, Stanford University Press, Standford.
11. Isbell W. Mummies and mortuary monuments: a postprocessual prehistory of Central Andean social organization 1997, University Texas Press, Austin.
12. Osborne H. Indians of the Andes: Aymaras and Quechuas 2004, Routledge, London.
13. Salomon F. The Beautiful Grandparents: Andean Ancestors Shrines and Mortuary Ritual as Seen Trough Colonial Records. Tombs for the Living: Andean Mortuary Practices 1995, 315-353. Dumbarton Oaks, Washington, D.C, Tom D.
14. Dulanto J. The archaeological study of ancestor cult practices: The case of Pampa Chica, a Late Initial Period and Early Horizon site on the central coast of Peru. The Space and Place of Death 2002, 97-117. Archaeological Papers of the American Anthropological Association, Silverman H, Small DB, 11.
15. oltimo ayllu Inka. Centro de Estudios Andinos, Cuzco 1984,
16. 3gica Andina 2005, 239-275. University of Warsaw, Warsaw, Ziolkowski M, Belan Franco LA, Sobczyk M.
17. Sobczyk M. Arquitectura funeraria prehispánica en la región del Nevado Coropuna, Perú 2000, University of Warsaw, Warsaw.
18. Kolman CJ, Bermingham E, Cooke R, et al. Reduced mtDNA diversity in the Ngobe Amerinds of Panama. Genetics 1995, 140:275. 1206555, 7635293.
19. Kolman CJ, Bermingham E. Mitochondrial and nuclear DNA diversity in the Choco and Chibcha Amerinds of Panama. Genetics 1997, 147:1289. 1208252, 9383071.
20. Melton PE, Bricen I. Biological Relationship Between Central and South American Chibchan Speaking Populations: Evidence From mtDNA. Am J Phys Anthropol 2007, 770:753-770.
21. Vona G, Falchi A, Moral P, Calò CM, Varesi L. Mitochondrial sequence variation in the Guahibo Amerindian population from Venezuela. Am J Phys Anthropol 2005, 127:361-369. 10.1002/ajpa.20070, 15558610.
22. Rickards O, Martínez-Labarga C, Lum JK, De Stefano GF, Cann RL. MtDNA history of the Cayapa Amerinds of Ecuador: detection of additional founding lineages for the Native American populations. Am J Hum Genet 1999, 65:519-530. 10.1086/302513, 1377950, 10417294.
23. Lewis CM, Lizárraga B, Tito RY, et al. Mitochondrial DNA and the peopling of South America. Hum Biol 2007, 79:159-178. 10.1353/hub.2007.0031, 18027812.
24. Lewis CM, Tito RY, Lizárraga B, Stone AC. Land, language, and loci: mtDNA in Native Americans and the genetic history of Peru. Am J Phys Anthropol 2005, 127:351-360. 10.1002/ajpa.20102, 15584069.
25. Fuselli S, Tarazona-Santos E, Dupanloup I, et al. Mitochondrial DNA diversity in South America and the genetic history of Andean highlanders. Mol Biol Evol 2003, 20:1682-1691. 10.1093/molbev/msg188, 12832631.
26. Bert F, Corella A, Gené M, Pérez-Pérez A, Turbón D. Mitochondrial DNA diversity in the Llanos de Moxos: Moxo, Movima and Yuracare Amerindian populations from Bolivia lowlands. Ann Hum Biol 2004, 31:9-28. 10.1080/03014460310001616464, 14742162.
27. Ward R, Salzano F, Bonatto S, et al. Mitochondrial DNA polymorphism in three Brazilian Indian tribes. Am J Hum Biol 1996, 8:317-323.
28. Schmitt R, Bonatto S, Freitas L, et al. Short Report Extremely limited mitochondrial DNA variability among the Aché Natives of Paraguay. Ann Hum Biol 2004, 31:87-94. 10.1080/03014460310001602063, 14742167.
29. Moraga M, Rocco P, Miquel J, et al. Mitochondrial DNA polymorphisms in Chilean aboriginal populations: implications for the peopling of the southern cone of the continent. Am J Phys Anthropol 2000, 113:19-29. 10.1002/1096-8644(200009)113:1<19::AID-AJPA3>3.0.CO;2-X, 10954617.
30. Pruvost M, Schwarz R, Correia VB, Champlot S, Braguier S, Morel N, Fernandez-Jalvo Y, Grange T, Geigl EM. Freshly excavated fossil bones are best for amplifcation of ancient DNA. Proccedings of the National Academy of Science USA 104(3):739-744.
31. Maniatis T, Fritsch EF, Sambrook J. Molecular cloning: a laboratory manual. Cold Spring Harbor Laboratory 1989, 545. Cold Spring Harbor, NY.
32. Santos FR. Pandya a. Tyler-Smith C: Reliability of DNA-based sex tests. Nature genetics 1998, 18:103.
33. Sullivan K, Mannucci A. A rapid and quantitative DNA sex test: fluorescence-based PCR analysis of XY homologous gene amelogenin. Biotechniques 1993, 15(1):636-641.
34. Butler J, Shen Y, McCord B. The development of reduced size STR amplicons as tools for analysis of degraded DNA. Journal of Forensic Sciences 2003, 48(5):1054-1064.
35. Drábek J, Chung D. Concordance study between Miniplex assays and a commercial STR typing kit. Journal of Forensic Sciences 2004, 49(4):859-860.
36. Chung D, Drábek J, Opel K. A study on the effects of degradation and template concentration on the amplification efficiency of the STR Miniplex primer sets. Journal of Forensic Sciences 2004, 49(4):733-740.
37. Reynolds J. Estimation of the coancestry coefficient: basis for a short-term genetic distance. Genetics 1983, 105(3):767-779. 1202185, 17246175.
38. Excoffier L. Arlequin (version 3.0): an integrated software package for population genetics data analysis. Evol Bioinformatics Online 2005, 1:47-50.
39. Jobling MA, Gill P. Encoded Evidence: DNA in forensic analysis. Nat Rev Genet 2004, 5(10):739-751.
40. Just RS, Irwin JA, O'Callaghan JE, Saunier JL, Coble MD, Vallone PM, Butler JM, Barrit SM, Parson TJ. Toward increased utility of mtDNA in forensic identifications. Forensic Science International 2004, 146:SupplS147-SupplS149.
41. Holland MM, Parsons TJ. Mitochondrial DNA sequence analysis - validation and use for forensic casework. Forensic Science Reviews 1999, 11:21-50.
42. Butler J. Forensic DNA typing: biology, technology, and genetics of STR markers 2005, Elsevier, New York, 3.
43. Queller DC, Goodnight KF. Estimating relatedness using molecular markers. Evolution 1989, 43:258-275.
44. Goodnight KF, Queller DC. Relatedness v. 5.0.8. Goodnight Software, Huston 2001,
45. Lynch M, Ritland K. Estimation of Pairwise Relatedness With Molecular Markers. Genetics 1999, 152:1753-1766. 1460714, 10430599.
46. Peakal R, Smouse PE. GENALEX 6: genetic analysis in Excel. Population genetic software for teaching and research. Molecular Ecology Notes 2006, 6(1):288-295.
47. Csilléry K, Johnson T, Beraldi D, et al. Performance of marker-based relatedness estimators in natural populations of outbred vertebrates. Genetics 2006, 173:2091-2101. 10.1534/genetics.106.057331, 1569738, 16783017.
48. Wang J. An estimator for pairwise relatedness using molecular markers. Genetics 2002, 160:1203-1215. 1462003, 11901134.
49. Achilli A, Perego UA, Bravi CM, et al. The Phylogeny of the Four Pan-American MtDNA Haplogroups: Implications for Evolutionary and Disease Studies. PLoS One 2008, 3(3):e1764. 10.1371/journal.pone.0001764, 2258150, 18335039.
50. Tamm E, Kivisild T, Reidla M, Metspalu M, Smith DG, et al. Beringian standstill and spread of Native American founders. PLoS One 2007, 2(9):e829. 10.1371/journal.pone.0000829, 1952074, 17786201.
51. Pfeiffer H, Brinkmann B, Hühne J. Expanding the forensic German mitochondrial DNA control region database: genetic diversity as a function of sample size and microgeography. International Journal of Legal Medicine 1999, 112(5):291-298. 10.1007/s004140050252, 10460419.
52. Wang S, Lewis CM, Jakobsson M, et al. Genetic variation and population structure in Native Americans. PLoS Genetics 2007, 3:e185. 10.1371/journal.pgen.0030185, 2082466, 18039031.
53. Albeza M, Picornell A, Acreche N, et al. Genetic Variability at 14 STR loci in the Puna population of north western Argentina. International Journal of Legal Medicine 2002, 116:126-132. 10.1007/s00414-001-0268-5, 12111314.
54. Carnese FR, Mendisco F, Keyser C, et al. Paleogenetical study of pre-Columbian samples from Pampa Grande (Salta, Argentina). Am J Phys Anthropol 2010, 141:452-462.
55. Cooper A, Poinar HN. Ancient DNA: do it right or not at all. Science 2000, 289:1139-1139.
56. Poinar HN. The top 10 list: criteria of authenticity for DNA from ancient and forensic samples. Int Congr Ser 2003, 1239:575-579.
57. Kemp BM, Smith DG. Ancient DNA Methodology: " Thoughts from Brian M. Kemp and David Glenn Smith on " Mitochondrial DNA of Protohistoric Remains of an Arikara Population from South Dakota" . Hum Biol 2010, 82:227-238. 10.3378/027.082.0207, 20649402.
58. Gilbert MTP, Bandelt H-J, Hofreiter M, Barnes I. Assessing ancient DNA studies. Trends in Ecology and Evolution 2005, 20:541-544. 10.1016/j.tree.2005.07.005, 16701432.
59. Bandelt H. Mosaics of ancient mitochondrial DNA: positive indicators of nonauthenticity. Eur J Hum Genet 2005, 13(10):1106-1112. 10.1038/sj.ejhg.5201476, 16077732.
60. Rodriguez-Delfin L, Rubin-de-Celis VE, Zago M. Genetic diversity in an Andean population from Peru and regional migration patterns of Amerindians in South America: data from Y chromosome and mitochondrial DNA. Hum Hered 2001, 51:97-106. 10.1159/000022964, 11096276.
61. Tarazona-Santos E, Carvalho-Silva DR, Pettener D, et al. Genetic differentiation in South Amerindians is related to environmental and cultural diversity: evidence from the Y chromosome. Am J Hum Genet 2001, 68:1485-1496. 10.1086/320601, 1226135, 11353402.
62. Smith CT. Depopulation of the Central Andes in the 16th Century. Curr Anthropol 1970, 11:453-464.
63. Bocanegra PJ. Ritual formulario; e institucion de Cura, para administrar a los naturales de este Reyno, etc. Lima 1631,