Difficulties in rejecting a local ancestry with mtDNA haplogroup data in the South-Central Andes

Latin American Antiquity

Volumn 20, Issue 1, 2009, Pages 76-90

  Lewis Jr , Cecil M ^a  

^a UNIVERSITY OF OKLAHOMA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 65849248969     PISSN: 10456635     EISSN: None     Source Type: Journal    
DOI: 10.1017/S1045663500002522     Document Type: Article

References (59)

1. 14C Yr High-Resolution Record of Water-Level Changes in Lake Titicaca, Bolivia-Peru. Quaternary Research 47:169-180.
2. Agresti, Alan 2001 Exact Inference for Categorical Data: Recent Advances and Continuing Controversies. Statistics in Medicine 20(17-18):2709-2722.
3. Bailliet, Graciela, Francisco Rothhammer, Francisco Raúl Carnese, Claudio Marcelo Bravi, and Néstor Oscar Bianchi 1994 Founder Mitochondrial Haplotypes in Amerindian Populations. American Journal of Human Genetics 55:27-33.
4. Bermann, Marc, Paul Goldstein, Charles Stanish, and Luis Watanabe M. (editors) 1989 The Collapse of the Tiwanaku State: A View from the Osmore Drainage. British Archaeological Reports International Series, Oxford.
5. Bert, Francesc, Alfons Corella, Manel Gené, Alejandro Pérez-Pérez, and Daniel Turbón 2001 Major Mitochondrial DNA Haplotype Heterogeneity in Highland and Lowland Amerindian Populations from Bolivia. Human Biology 73:1-16.
6. Binford, Michael W., Alan L. Kolata, Mark Brenner, John W. Janusek, Matthew T. Seddon, Mark Abbott, and Jason H. Curtis 1997 Climate Variation and the Rise and Fall of an Andean Civilization. Quaternary Research 47:235-248.
7. Blom, Deborah 1999 Tiwanaku Regional Interaction and Social Identity: A Bioarchaeological Approach. Unpublished Ph.D. dissertation, Department of Anthropology, University of Chicago, Chicago.
8. Blom, Deborah E., Benedikt Hallgrímsson, Linda Keng, María C. Lozada, and Jane E. Buikstra 1998 Tiwanaku "Colonization": Biological Implications for Migration in the Moquegua Valley, Peru. World Archaeology 30:238-261.
9. Bonatto, Sandro L., and Francisco M. Salzano 1997 A Single and Early Migration for the Peopling of the Americas Supported by Mitochondrial DNA Sequence Data. Proceedings of the National Academy of Sciences, USA 94:1866-1871.
10. Carson, E. Ann 2006a Maximum Likelihood Estimation of Human Craniometric Heritabilities. American Journal of Physical Anthropology 131(2): 169-180.
11. 2006b Maximum-Likelihood Variance Components Analysis of Heritabilities of Cranial Nonmetric Traits. Human Biology 78(4):383-402.
12. Dornelles, Cláudia L., Sandro L. Bonatto, Loreta B. De Freitas, and Francisco M. Salzano 2005 Is Haplogroup X Present in Extant South American Indians? American Journal of Physical Anthropology 127(4)439-448.
13. Falconer, Douglas S., and Trudy F. C. Mackay 1996 Introduction to Quantitative Genetics. 4th ed. Prentíce Hall, New York.
14. Fenner, Jack N. 2005 Cross-Cultural Estimation of the Human Generation Interval for Use in Genetics-Based Population Divergence Studies. American Journal of Physical Anthropology 128(2):415-423.
15. Fuselli, Silvia, Eduardo Tarazona-Santos, Isabelle Dupanloup, Alonso Soto, Donata Luiselli, and Davide Pettener 2003 Mitochondrial DNA Diversity in South America and the Genetic History of Andean Highlanders. Molecular Biology and Evolution 20:1682-1691.
16. Gillespie, John H. 2000 Genetic Drift in an Infinite Population: The Pseudo-hitchhiking Model. Genetics 155(2):909-919.
17. 2004 Population Genetics. A Concise Guide. John Hopkins University Press, Baltimore.
18. Goldstein, Paul S. 1989a Omo, a Tiwanaku Provincial Center in Moquegua, Peru. Unpublished Ph.D. dissertation, University of Chicago, Chicago.
19. 1989b The Tiwanaku Occupation of Moquegua. In Ecology, Settlement and History in the Osmore Drainage, Perú, edited by Don S. Rice, Charles Stanish, and Phillip R. Scarr, pp. 219-266. BAR International Series, British Archaeological Reports, Oxford.
20. 1992 Tiwanaku Temples and State Expansion. Latin American Antiquity 4:22-47.
21. 1993 House, Community and State in the Earliest Tiwanaku Colony: Domestic Patterns and State Integration at Omo M12,Moqaega. In Domestic Architecture, Ethnicity, and Complementarity in the South Central-Andes, edited by Mark S. Aldenderfer, pp. 25-41. University of Iowa Press, Iowa City.
22. 2000 Communities Without Borders: The Vertical Archipelago and Diaspora Communities in the Southern Andes. In The Archaeology of Communities: A New World Perspective, edited by Marcello A. Canuto and Jason Yaeger, pp. 182-209. Routledge, London.
23. 2005 Andean Diaspora, the Tiwanaku Colonies and the Origins of South American Empire. University Press of Florida, Gainesville.
24. Gonder, Mary K., Holly M. Mortensen, Floyd A. Reed, Alexandra de Sousa, and Sarah A. Tishkoff 2007 Whole-mtDNA Genome Sequence Analysis of Ancient African Lineages. Molecular Biology Evolution 24(3):757-768.
25. Hey, Jody 2005 On the Number of New World Founders: A Population Genetic Portrait of the Peopling of the Americas. PLoS Biology 3(6):e193.
26. Janusek, John Wayne 2004 Tiwanaku and Its Precursors: Recent Research and Emerging Perspectives. Journal of Archaeological Research 12(2): 121-183.
27. Janusek, John Wayne, and Allen L. Kolata 2004 Top-Down or Bottom-Up: Rural Settlement and Raised Field Agriculture in the Lake Titicaca Basin, Bolivia. Journal of Anthropological Archaeology 23:404-430.
28. Keefer, David K., Michael E. Moseley, and Susan D. deFrance 2003 A 38,000-Year Record of Floods and Debris Flows in the Ilo Region of Southern Peru and Its Relation to El Niño Events and Great Earthquakes. Palaeogeography, Palaeoclimatology, Palaeoecology 194:41-77.
29. Kemp, Brian M., Ripan S. Malhi, John McDonough, Deborah A. Bolnick, Jason A. Eshleman, Olga Rickards, Cristina Martinez-Labarga, John R. Johnson, Joseph G. Lorenz, E. James Dixon, Terence E. Fifield, Timothy H. Heaton, Rosita Worl, and David Glenn Smith 2007 Genetic Analysis of Early Holocene Skeletal Remains from Alaska and Its Implications for the Settlement of the Americas. American Journal of Physical Anthropology 132(4):605-621.
30. Kivisild, Toomas, Peidong Shen, Dennis P. Wall, Bao Do, Raphael Sung, Karen Davis, Giuseppe Passarino, Peter A. Underhill, Curt Scharfe, Antonio Torroni, Rosaria Scozzari, David Modiano, Alfredo Coppa, Peter de Knijff, Marcus Feldman, Luca L. Cavalli-Sforza, and Peter J. Oefner 2006 The Role of Selection in the Evolution of Human Mitochondrial Genomes. Genetics 172(1):373-387.
31. Knudson, Kelly 2004 Tiwanaku Residential Mobility in the South Central Andes: Identifying Archaeological Human Migration Through Strontium Isotope Analysis. Unpublished Ph.D. dissertation, Department of Anthropology, University of Wisconsin, Madison.
32. Knudson, Kelly, T. Douglas Price, Jane E. Buikstra, and Deborah Blom 2004 The Use of Strontium Isotope Analysis to Investigate Tiwanaku Migration and Mortuary Ritual in Bolivia and Peru. Archaeometry 46:5-18.
33. Kolata, A. L. 1992 Economy, Ideology, and Imperialism in the South-Central Andes. In Ideology and Pre-Columbian Civilizations, edited by Arthur A. Demarest and Geoffrey W. Conrad, pp. 65-86. School of American Research Press, Santa Fe.
34. Kolata, A. L., and C. R. Ortloff 1996 Agro-Ecological Perspectives on the Decline of the Tiwanaku State. In Tiwanaku and Its Hinterland: Archaeology and Paleoecology of an Andean Civilization, Vol. 1, edited by Alan L. Kolata, pp. 181-202. Smithsonian Institution Press, Washington, D.C.
35. Lewis, Cecil M., Jr., Jane E. Buikstra, and Anne C. Stone 2007a Ancient DNA and Genetic Continuity in the South Central Andes. Latin American Antiquity 18(2): 145-160.
36. Lewis, Cecil M., Jr., Beatriz Lizárraga, Raul Y. Tito, Pual W. López, Giancarlo Iannacone, Angel Medina, Rolando Martínez, Susan I. Polo, Augusto F. d. 1. Cruz, Angela M. Cáceres, and Anne C. Stone 2007b Mitochondrial DNA and the Peopling of South America. Human Biology 79(2): 159-178.
37. Lewis, Cecil M., Jr., and Jeff C. Long 2008 Native South American Genetic Structure and Pre-history Inferred from Hierarchical Modeling of mtDNA. Molecular Biology and Evolution 25(3):478-486.
38. Lewis, Cecil M., Jr., Raul Y. Tito, Beatriz Lizarraga, and Anne C. Stone 2004 Land, Language, and Loci: mtDNA in Native Americans and the Genetic History of Peru. American Journal of Physical Anthropology 127:351-360.
39. Luiselli, Donata, Lucia Simoni, Eduardo Tarazona-Santos, Santiago Pastor, and Davide Pettener 2000 Genetic Structure of Quechua-Speakers of the Central Andes and Geographic Patterns of Gene Frequencies in South Amerindian Populations. American Journal of Physical Anthropology 113:5-17.
40. Merriwether, D. Andrew, Robert E. Ferrell, and Francisco Rothhammer 1995 MtDNA D-loop 6-bp Deletion Found in Chilean Aymara: Not a Unique Marker for Chibcha-Speaking Amerindians. American Journal of Human Genetics 56:812-813.
41. Mishmar, Dan, Eduardo Ruiz-Pesini, Pawel Golik, Vincent Macaulay, Andrew G. Clark, Seyed Hosseini, Martin Brandon, Kirk Easley, Easley Chen, Michael D. Brown, Rem I. Sukernik, Antonel Olckers, and Douglas C. Wallace 2003 Natural Selection Shaped Regional mtDNA Variation in Humans. Proceeding of the National Academy of Sciences, USA 100(1):171-176.
42. Moraga, Mauricio L., Eugenio Aspillaga, Calogero Santoro, Vivien Standen, Pilar Carvallo, and Francisco Rothhammer 2001 MtDNA Analysis of Mummies from Northern Chile Endorse the Hypothesis of an Amazonian Origin of Andean Populations. Revista Chilena de Historia Natural 74:719-726.
43. Moraga, Mauricio L., Calogero Santoro, Vivien G. Standen, Pilar Carvallo, and Francisco Rothhammer 2005 Microevolution in Prehistoric Andean Populations: Chronologic mtDNA Variation in the Desert Valleys of Northern Chile. American Journal of Physical Anthropology 127:170-181.
44. Mujica, Elias 1985 Altiplano-Coast Relationships in the South-Central Andes: From Indirect to Direct Complementarity. In Andean Ecology and Civilization, edited by Shozo Masuda, Izumi Shimada, and Craig Morris, pp. 103-140. University of Tokyo, Tokyo.
45. Nei, Masatoshi 1987 Molecular Evolutionary Genetics. Columbia University Press, New York.
46. Owen, Bruce D. 2005 Distant Colonies and Explosive Collapse: The Two Stages of the Tiwanaku Diaspora in the Osmore Drainage. Latin American Antiquity 16(1) 45-80.
47. Reycraft, Richard M. 1998 The Terminal Chiribaya Project: The Archaeology of Human Response to Natural Disaster in South Coastal Perú. Unpublished Ph.D. dissertation, University of New Mexico, Albuquerque.
48. 2000 Long-Term Human Response to El Niño in South Coastal Perú, Circa A.D. 1400. In Environmental Disaster and the Archaeology of Human Response, edited by G. Bawden and R. M. Reycraft, pp. 99-120. Anthropological Papers No. 7. Maxwell Museum of Anthropology, Albuquerque.
49. Rothhammer, Francisco, Mauricio Moraga, Mario Rivera, Calogero Santoro, Vivien G. Standen, Federico García, and Pilar Carvallo 2003 Análisis de ADNmt de Restos Esqueletales del Sitio Arqueológico de Tiwanakiu y su Relación con el Origen de sus Constractores. Chungará 35:269-274.
50. Rothhammer, Francisco, and Calogero Santoro 2001 El desarrollo cultural en el valle de Azapa, extremo norte de Chile, y su vinculación con los desplazamientos poblacionales altiplanicos. Latin American Antiquity 12:59-66.
51. Satterlee, Dennis 1993 Impact of a Fourteenth Century El Niño on an Indigenous Population near Ilo, Perú. Unpublished Ph.D. dissertation, University of Florida, Gainesville.
52. Silva, Wilson A., Jr., Sandro L. Bonatto, Adriano J. Holanda, Andrea K. Ribeiro-dos-Santos, Beatriz M. Paixão, Gustavo H. Goldman, Kiyoko Abe-Sandes, Luis Rodriguez-Delfin, Marcela Barbosa, Maria Luiza Paçó-Larson, Maria Luiza Petzl-Erler, Valeria Valente, Sidney E. B. Santos, and Marco A. Zago 2002 Mitochondrial Genome Diversity of Native Americans Supports a Single Early Entry of Founder Populations into America. American Journal of Human Genetics 71(1):187-192.
53. Sutter, Richard C. 2000 Prehistoric Genetic and Culture Change: A Bioarchaeological Search for Pre-Inka Altipiano Colonies in the Coastal Valleys of Moquegua, Peru, and Azapa, Chile. American Journal of Physical Anthropology 11(1):43-70.
54. Sutter, Richard C., and Lisa Mertz 2004 Nonmetric Cranial Trait Variation and Prehistoric Biocultural Change in the Azapa Valley, Chile. American Journal of Physical Anthropology 123(2): 130-145.
55. Tarazona-Santos, Eduardo, Denise R. Carvalho-Silva, Davide Pettener, Donata Luiselli, Gian Franco De Stefano, Cristina Martinez Labarga, Olga Rickards, Chris Tyler-Smith, Sérgio D. J. Pena, and Fabrício R. Santos 2001 Genetic Differentiation in South Amerindians Is Related to Environmental and Cultural Diversity: Evidence from the Y Chromosome. American Journal of Human Genetics 68:1485-1496.
56. Torero, Alfredo 2003 Idiomas de los Andes, Lingüística e Historia. Institute Francés de Estudios Andinos Editorial Horizonte, Lima.
57. Wang, Sijia, Cecil M. Lewis Jr., Mattias Jakobsson, Sohini Ramachandran, Nicolas Ray, Gabriel Bedoya, Winston Rojas, Maria V. Parra, Julio A. Molina, Carla Gallo, Guido Mazzotti, Giovanni Poletti, Kim Hill, Ana M. Hurtado, Damian Labuda, William Klitz, Ramiro Barrantes, Maria Cátira Bortolini, Francisco M. Salzano, Maria Luiza Petzl-Erler, Luiza T. Tsuneto, Elena Llop, Francisco Rothhammer, Laurent Excoffier, Marcus W. Feldman, Noah A. Rosenberg, and Andrés Ruiz-Linares 2007 Genetic Variation and Population Structure in Native Americans. PLoS Genetics 3(11):e185.
58. Workman, P. L., and J. D. Niswander 1970 Population Studies on Southwestern Indian Tribes. II. Local Genetic Differentiation in the Papago. American Journal Human Genetics 22(1):24-49.
59. Zaro, Gregory 2005 Human Ecology and Ancient Agrarian Land Use at Wawakiki Spring, South Coast Peru, A.D. 1000-2000. Unpublished Ph.D. dissertation, University of New Mexico, Albuquerque.