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Volumn 425, Issue 2, 2012, Pages 128-134

A pressure cooking-based DNA extraction from archival formalin-fixed, paraffin-embedded tissue

Author keywords

DNA extraction; DNA methylation; Formalin fixed paraffin embedded tissues; Intraepithelial neoplasia; Methylation specific PCR (MSP)

Indexed keywords

ALKYLATION; DNA; EXTRACTION; FORMALDEHYDE; METHYLATION; PARAFFINS; TISSUE; TISSUE ENGINEERING;

EID: 84859928466     PISSN: 00032697     EISSN: 10960309     Source Type: Journal    
DOI: 10.1016/j.ab.2012.03.012     Document Type: Article
Times cited : (13)

References (28)
  • 2
    • 0015543341 scopus 로고
    • Reactions of nucleic acids and nucleoproteins with formaldehyde
    • M.Y. Feldman Reactions of nucleic acids and nucleoproteins with formaldehyde Prog. Nucleic Acid Res. Mol. Biol. 13 1973 1 49
    • (1973) Prog. Nucleic Acid Res. Mol. Biol. , vol.13 , pp. 1-49
    • Feldman, M.Y.1
  • 4
    • 0029922561 scopus 로고    scopus 로고
    • PCR amplification of DNA from archival specimens. A methodological approach
    • J. Pavelic, K. Gall-Troselj, M.H. Bosnar, M.M. Kardum, and K. Pavelic PCR amplification of DNA from archival specimens: a methodological approach Neoplasma 43 1996 75 81 (Pubitemid 26166215)
    • (1996) Neoplasma , vol.43 , Issue.2 , pp. 75-81
    • Pavelic, J.1    Gall-Troselj, K.2    Herak Bosnar, M.3    Kardum, M.M.4    Pavelic, K.5
  • 5
    • 0027512268 scopus 로고
    • Loss of heterozygosity of p53 in oral cancers demonstrated by the polymerase chain reaction
    • J.S. Largey, S.J. Meltzer, J. Yin, K. Norris, J.J. Sauk, and D.W. Archibald Loss of heterozygosity of p53 in oral cancers demonstrated by the polymerase chain reaction Cancer 71 1993 1933 1937 (Pubitemid 23068537)
    • (1993) Cancer , vol.71 , Issue.6 , pp. 1933-1937
    • Largey, J.S.1    Meltzer, S.J.2    Yin, J.3    Norris, K.4    Sauk, J.J.5    Archibald, D.W.6
  • 6
    • 0034812285 scopus 로고    scopus 로고
    • Unlocking the archive - Gene expression in paraffin-embedded tissue
    • DOI 10.1002/1096-9896(200109)195:1<66::AID-PATH921>3.0.CO;2-F
    • F. Lewis, N.J. Maughan, V. Smith, K. Hillan, and P. Quirke Unlocking the archive: gene expression in paraffin-embedded tissue J. Pathol. 195 2001 66 71 (Pubitemid 32899046)
    • (2001) Journal of Pathology , vol.195 , Issue.1 , pp. 66-71
    • Lewis, F.1    Maughan, N.J.2    Smith, V.3    Hillan, K.4    Quirke E, P.5
  • 7
    • 0033628755 scopus 로고    scopus 로고
    • Rapid extraction of DNA from archival clinical specimens: Our experiences
    • M. Poljak, K. Seme, and N. Gale Rapid extraction of DNA from archival clinical specimens: our experiences Pflugers Arch. 439 2000 R42 R44
    • (2000) Pflugers Arch. , vol.439
    • Poljak, M.1    Seme, K.2    Gale, N.3
  • 8
    • 0029742942 scopus 로고    scopus 로고
    • Nested PCR-SSCP assay for the detection of p53 mutations in paraffin wax embedded bone tumours: Improvement of sensitivity and fidelity
    • L.T. Wang, A. Smith, B. Iacopetta, D.J. Wood, J.M. Papadimitriou, and M.H. Zheng Nested PCR-SSCP assay for the detection of p53 mutations in paraffin wax embedded bone tumours: improvement of sensitivity and fidelity Clin. Mol. Pathol. 49 1996 M176 M178
    • (1996) Clin. Mol. Pathol. , vol.49
    • Wang, L.T.1    Smith, A.2    Iacopetta, B.3    Wood, D.J.4    Papadimitriou, J.M.5    Zheng, M.H.6
  • 9
    • 0032960181 scopus 로고    scopus 로고
    • Cancer epigenetics comes of age
    • DOI 10.1038/5947
    • P.A. Jones, and P.W. Laird Cancer epigenetics comes of age Nat. Genet. 21 1999 163 167 (Pubitemid 29070360)
    • (1999) Nature Genetics , vol.21 , Issue.2 , pp. 163-167
    • Jones, P.A.1    Laird, P.W.2
  • 10
    • 0038576158 scopus 로고    scopus 로고
    • The power and the promise of DNA methylation markers
    • P.W. Laird The power and the promise of DNA methylation markers Nat. Rev. Cancer 3 2003 253 266 (Pubitemid 37328861)
    • (2003) Nature Reviews Cancer , vol.3 , Issue.4 , pp. 253-266
    • Laird, P.W.1
  • 11
    • 0345357773 scopus 로고    scopus 로고
    • Gene Silencing in Cancer in Association with Promoter Hypermethylation
    • DOI 10.1056/NEJMra023075
    • J.G. Herman, and S.B. Baylin Gene silencing in cancer in association with promoter hypermethylation N. Engl. J. Med. 349 2003 2042 2054 (Pubitemid 37448928)
    • (2003) New England Journal of Medicine , vol.349 , Issue.21 , pp. 2042-2054
    • Herman, J.G.1    Baylin, S.B.2
  • 13
    • 0036753290 scopus 로고    scopus 로고
    • DNA methylation: A profile of methods and applications
    • M.F. Fraga, and M. Esteller DNA methylation: a profile of methods and applications BioTechniques 33 2002 632 649 (Pubitemid 35277569)
    • (2002) BioTechniques , vol.33 , Issue.3 , pp. 632-649
    • Fraga, M.F.1    Esteller, M.2
  • 19
    • 0028216769 scopus 로고
    • Sample preparation and PCR amplification from paraffin-embedded tissues
    • C.E. Greer, C.M. Wheeler, and M.M. Manos Sample preparation and PCR amplification from paraffin-embedded tissues PCR Methods Appl. 3 1994 S113 S122
    • (1994) PCR Methods Appl. , vol.3
    • Greer, C.E.1    Wheeler, C.M.2    Manos, M.M.3
  • 20
    • 33751381986 scopus 로고    scopus 로고
    • Optimization of recovery of RNA from formalin-fixed, paraffin-embedded tissue
    • DOI 10.1097/01.pdm.0000213468.91139.2d, PII 0001960620061200000006
    • J.Y. Chung, T. Braunschweig, and S.M. Hewitt Optimization of recovery of RNA from formalin-fixed, paraffin-embedded tissue Diagn. Mol. Pathol. 15 2006 229 236 (Pubitemid 44813662)
    • (2006) Diagnostic Molecular Pathology , vol.15 , Issue.4 , pp. 229-236
    • Chung, J.-Y.1    Braunschweig, T.2    Hewitt, S.M.3
  • 21
    • 15044365131 scopus 로고    scopus 로고
    • DNA and RNA obtained from Bouin's fixed tissues
    • DOI 10.1136/jcp.2004.016477
    • S. Bonin, F. Petrera, J. Rosai, and G. Stanta DNA and RNA obtained from Bouin's fixed tissues J. Clin. Pathol. 58 2005 313 316 (Pubitemid 40380330)
    • (2005) Journal of Clinical Pathology , vol.58 , Issue.3 , pp. 313-316
    • Bonin, S.1    Petrera, F.2    Rosai, J.3    Stanta, G.4
  • 22
    • 5644228885 scopus 로고    scopus 로고
    • DNA extraction from archival formalin-fixed, paraffin-embedded tissues: Heat-induced retrieval in alkaline solution
    • DOI 10.1007/s00418-004-0693-x
    • S.R. Shi, R. Datar, C. Liu, L. Wu, Z. Zhang, R.J. Cote, and C.R. Taylor DNA extraction from archival formalin-fixed, paraffin-embedded tissues: heat-induced retrieval in alkaline solution Histochem. Cell Biol. 122 2004 211 218 (Pubitemid 39371490)
    • (2004) Histochemistry and Cell Biology , vol.122 , Issue.3 , pp. 211-218
    • Shi, S.-R.1    Datar, R.2    Liu, C.3    Wu, L.4    Zhang, Z.5    Cote, R.J.6    Taylor, C.R.7
  • 23
    • 0036733698 scopus 로고    scopus 로고
    • Extraction and amplification of DNA from formalin-fixed, paraffin-embedded tissues
    • DOI 10.1097/00022744-200209000-00015
    • L. Wu, N. Patten, C.T. Yamashiro, and B. Chui Extraction and amplification of DNA from formalin-fixed, paraffin-embedded tissues Appl. Immunohistochem. Mol. Morphol. 10 2002 269 274 (Pubitemid 34988538)
    • (2002) Applied Immunohistochemistry and Molecular Morphology , vol.10 , Issue.3 , pp. 269-274
    • Wu, L.1    Patten, N.2    Yamashiro, C.T.3    Chui, B.4
  • 25
    • 0035511824 scopus 로고    scopus 로고
    • The suitability of DNA extracted from formalin-fixed, paraffin-embedded tissues for double differential polymerase chain reaction analysis
    • K. Bielawski, A. Zaczek, U. Lisowska, A. Dybikowska, A. Kowalska, and B. Falkiewicz The suitability of DNA extracted from formalin-fixed, paraffin-embedded tissues for double differential polymerase chain reaction analysis Int. J. Mol. Med. 8 2001 573 578
    • (2001) Int. J. Mol. Med. , vol.8 , pp. 573-578
    • Bielawski, K.1    Zaczek, A.2    Lisowska, U.3    Dybikowska, A.4    Kowalska, A.5    Falkiewicz, B.6
  • 26
    • 0035194394 scopus 로고    scopus 로고
    • Comparison of the DNA extraction methods for polymerase chain reaction amplification from formalin-fixed and paraffin-embedded tissues
    • DOI 10.1097/00019606-200112000-00009
    • Y. Sato, R. Sugie, B. Tsuchiya, T. Kameya, M. Natori, and K. Mukai Comparison of the DNA extraction methods for polymerase chain reaction amplification from formalin-fixed and paraffin-embedded tissues Diagn. Mol. Pathol. 10 2001 265 271 (Pubitemid 33130034)
    • (2001) Diagnostic Molecular Pathology , vol.10 , Issue.4 , pp. 265-271
    • Sato, Y.1    Sugie, R.2    Tsuchiya, B.3    Kameya, T.4    Natori, M.5    Mukai, K.6
  • 27
    • 67449163790 scopus 로고    scopus 로고
    • A well-based reverse-phase protein array applicable to extracts from formalin-fixed paraffin-embedded tissue
    • J.Y. Chung, S.J. Lee, Y. Kris, T. Braunschweig, J.L. Traicoff, and S.M. Hewitt A well-based reverse-phase protein array applicable to extracts from formalin-fixed paraffin-embedded tissue Proteomics Clin. Appl. 2 2008 1539 1547
    • (2008) Proteomics Clin. Appl. , vol.2 , pp. 1539-1547
    • Chung, J.Y.1    Lee, S.J.2    Kris, Y.3    Braunschweig, T.4    Traicoff, J.L.5    Hewitt, S.M.6
  • 28
    • 52949096084 scopus 로고    scopus 로고
    • Next-generation DNA sequencing methods
    • E.R. Mardis Next-generation DNA sequencing methods Annu. Rev. Genomics Hum. Genet. 9 2008 387 402
    • (2008) Annu. Rev. Genomics Hum. Genet. , vol.9 , pp. 387-402
    • Mardis, E.R.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.