-
1
-
-
57349105253
-
Tissue handling and specimen preparation in surgical pathology: Issues concerning the recovery of nucleic acids from formalin-fixed, paraffin-embedded tissue
-
S.M. Hewitt, F.A. Lewis, Y. Cao, R.C. Conrad, M. Cronin, K.D. Danenberg, T.J. Goralski, J.P. Langmore, R.G. Raja, P.M. Williams, J.F. Palma, and J.A. Warrington Tissue handling and specimen preparation in surgical pathology: issues concerning the recovery of nucleic acids from formalin-fixed, paraffin-embedded tissue Arch. Pathol. Lab. Med. 132 2008 1929 1935
-
(2008)
Arch. Pathol. Lab. Med.
, vol.132
, pp. 1929-1935
-
-
Hewitt, S.M.1
Lewis, F.A.2
Cao, Y.3
Conrad, R.C.4
Cronin, M.5
Danenberg, K.D.6
Goralski, T.J.7
Langmore, J.P.8
Raja, R.G.9
Williams, P.M.10
Palma, J.F.11
Warrington, J.A.12
-
2
-
-
0015543341
-
Reactions of nucleic acids and nucleoproteins with formaldehyde
-
M.Y. Feldman Reactions of nucleic acids and nucleoproteins with formaldehyde Prog. Nucleic Acid Res. Mol. Biol. 13 1973 1 49
-
(1973)
Prog. Nucleic Acid Res. Mol. Biol.
, vol.13
, pp. 1-49
-
-
Feldman, M.Y.1
-
3
-
-
77951631386
-
The isolation of nucleic acids from fixed, paraffin-embedded tissues: Which methods are useful when?
-
M.T. Gilbert, T. Haselkorn, M. Bunce, J.J. Sanchez, S.B. Lucas, L.D. Jewell, E. Van Marck, and M. Worobey The isolation of nucleic acids from fixed, paraffin-embedded tissues: which methods are useful when? PLoS One 2 2007 e537
-
(2007)
PLoS One
, vol.2
, pp. 537
-
-
Gilbert, M.T.1
Haselkorn, T.2
Bunce, M.3
Sanchez, J.J.4
Lucas, S.B.5
Jewell, L.D.6
Van Marck, E.7
Worobey, M.8
-
4
-
-
0029922561
-
PCR amplification of DNA from archival specimens. A methodological approach
-
J. Pavelic, K. Gall-Troselj, M.H. Bosnar, M.M. Kardum, and K. Pavelic PCR amplification of DNA from archival specimens: a methodological approach Neoplasma 43 1996 75 81 (Pubitemid 26166215)
-
(1996)
Neoplasma
, vol.43
, Issue.2
, pp. 75-81
-
-
Pavelic, J.1
Gall-Troselj, K.2
Herak Bosnar, M.3
Kardum, M.M.4
Pavelic, K.5
-
5
-
-
0027512268
-
Loss of heterozygosity of p53 in oral cancers demonstrated by the polymerase chain reaction
-
J.S. Largey, S.J. Meltzer, J. Yin, K. Norris, J.J. Sauk, and D.W. Archibald Loss of heterozygosity of p53 in oral cancers demonstrated by the polymerase chain reaction Cancer 71 1993 1933 1937 (Pubitemid 23068537)
-
(1993)
Cancer
, vol.71
, Issue.6
, pp. 1933-1937
-
-
Largey, J.S.1
Meltzer, S.J.2
Yin, J.3
Norris, K.4
Sauk, J.J.5
Archibald, D.W.6
-
6
-
-
0034812285
-
Unlocking the archive - Gene expression in paraffin-embedded tissue
-
DOI 10.1002/1096-9896(200109)195:1<66::AID-PATH921>3.0.CO;2-F
-
F. Lewis, N.J. Maughan, V. Smith, K. Hillan, and P. Quirke Unlocking the archive: gene expression in paraffin-embedded tissue J. Pathol. 195 2001 66 71 (Pubitemid 32899046)
-
(2001)
Journal of Pathology
, vol.195
, Issue.1
, pp. 66-71
-
-
Lewis, F.1
Maughan, N.J.2
Smith, V.3
Hillan, K.4
Quirke E, P.5
-
7
-
-
0033628755
-
Rapid extraction of DNA from archival clinical specimens: Our experiences
-
M. Poljak, K. Seme, and N. Gale Rapid extraction of DNA from archival clinical specimens: our experiences Pflugers Arch. 439 2000 R42 R44
-
(2000)
Pflugers Arch.
, vol.439
-
-
Poljak, M.1
Seme, K.2
Gale, N.3
-
8
-
-
0029742942
-
Nested PCR-SSCP assay for the detection of p53 mutations in paraffin wax embedded bone tumours: Improvement of sensitivity and fidelity
-
L.T. Wang, A. Smith, B. Iacopetta, D.J. Wood, J.M. Papadimitriou, and M.H. Zheng Nested PCR-SSCP assay for the detection of p53 mutations in paraffin wax embedded bone tumours: improvement of sensitivity and fidelity Clin. Mol. Pathol. 49 1996 M176 M178
-
(1996)
Clin. Mol. Pathol.
, vol.49
-
-
Wang, L.T.1
Smith, A.2
Iacopetta, B.3
Wood, D.J.4
Papadimitriou, J.M.5
Zheng, M.H.6
-
9
-
-
0032960181
-
Cancer epigenetics comes of age
-
DOI 10.1038/5947
-
P.A. Jones, and P.W. Laird Cancer epigenetics comes of age Nat. Genet. 21 1999 163 167 (Pubitemid 29070360)
-
(1999)
Nature Genetics
, vol.21
, Issue.2
, pp. 163-167
-
-
Jones, P.A.1
Laird, P.W.2
-
10
-
-
0038576158
-
The power and the promise of DNA methylation markers
-
P.W. Laird The power and the promise of DNA methylation markers Nat. Rev. Cancer 3 2003 253 266 (Pubitemid 37328861)
-
(2003)
Nature Reviews Cancer
, vol.3
, Issue.4
, pp. 253-266
-
-
Laird, P.W.1
-
11
-
-
0345357773
-
Gene Silencing in Cancer in Association with Promoter Hypermethylation
-
DOI 10.1056/NEJMra023075
-
J.G. Herman, and S.B. Baylin Gene silencing in cancer in association with promoter hypermethylation N. Engl. J. Med. 349 2003 2042 2054 (Pubitemid 37448928)
-
(2003)
New England Journal of Medicine
, vol.349
, Issue.21
, pp. 2042-2054
-
-
Herman, J.G.1
Baylin, S.B.2
-
12
-
-
34547528183
-
DNA methylation: Bisulphite modification and analysis
-
S.J. Clark, A. Statham, C. Stirzaker, P.L. Molloy, and M. Frommer DNA methylation: bisulphite modification and analysis Nat. Protoc. 1 2006 2353 2364
-
(2006)
Nat. Protoc.
, vol.1
, pp. 2353-2364
-
-
Clark, S.J.1
Statham, A.2
Stirzaker, C.3
Molloy, P.L.4
Frommer, M.5
-
13
-
-
0036753290
-
DNA methylation: A profile of methods and applications
-
M.F. Fraga, and M. Esteller DNA methylation: a profile of methods and applications BioTechniques 33 2002 632 649 (Pubitemid 35277569)
-
(2002)
BioTechniques
, vol.33
, Issue.3
, pp. 632-649
-
-
Fraga, M.F.1
Esteller, M.2
-
14
-
-
0029843950
-
Methylation-specific PCR: A novel PCR assay for methylation status of CpG islands
-
DOI 10.1073/pnas.93.18.9821
-
J.G. Herman, J.R. Graff, S. Myohanen, B.D. Nelkin, and S.B. Baylin Methylation-specific PCR: a novel PCR assay for methylation status of CpG islands Proc. Natl. Acad. Sci. USA 93 1996 9821 9826 (Pubitemid 26296693)
-
(1996)
Proceedings of the National Academy of Sciences of the United States of America
, vol.93
, Issue.18
, pp. 9821-9826
-
-
Herman, J.G.1
Graff, J.R.2
Myohanen, S.3
Nelkin, B.D.4
Baylin, S.B.5
-
15
-
-
34848918829
-
Comparing the DNA hypermethylome with gene mutations in human colorectal cancer
-
DOI 10.1371/journal.pgen.0030157
-
K.E. Schuebel, W. Chen, L. Cope, S.C. Glockner, H. Suzuki, J.M. Yi, T.A. Chan, L. Van Neste, W. Van Criekinge, S. van den Bosch, M. van Engeland, A.H. Ting, K. Jair, W. Yu, M. Toyota, K. Imai, N. Ahuja, J.G. Herman, and S.B. Baylin Comparing the DNA hypermethylome with gene mutations in human colorectal cancer PLoS Genet. 3 2007 1709 1723 (Pubitemid 47510263)
-
(2007)
PLoS Genetics
, vol.3
, Issue.9
, pp. 1709-1723
-
-
Schuebel, K.E.1
Chen, W.2
Cope, L.3
Glockner, S.C.4
Suzuki, H.5
Yi, J.-M.6
Chan, T.A.7
Van Neste, L.8
Van Criekinge, W.9
Van Den Bosch, S.10
Van Engeland, M.11
Ting, A.H.12
Jair, K.13
Yu, W.14
Toyota, M.15
Imai, K.16
Ahuja, N.17
Herman, J.G.18
Baylin, S.B.19
-
16
-
-
66349102768
-
Methylation of TFPI2 in stool DNA: A potential novel biomarker for the detection of colorectal cancer
-
S.C. Glockner, M. Dhir, J.M. Yi, K.E. McGarvey, L. Van Neste, J. Louwagie, T.A. Chan, W. Kleeberger, A.P. de Bruine, K.M. Smits, C.A. Khalid-de Bakker, D.M. Jonkers, R.W. Stockbrugger, G.A. Meijer, F.A. Oort, C. Iacobuzio-Donahue, K. Bierau, J.G. Herman, S.B. Baylin, M. Van Engeland, K.E. Schuebel, and N. Ahuja Methylation of TFPI2 in stool DNA: a potential novel biomarker for the detection of colorectal cancer Cancer Res. 69 2009 4691 4699
-
(2009)
Cancer Res.
, vol.69
, pp. 4691-4699
-
-
Glockner, S.C.1
Dhir, M.2
Yi, J.M.3
McGarvey, K.E.4
Van Neste, L.5
Louwagie, J.6
Chan, T.A.7
Kleeberger, W.8
De Bruine, A.P.9
Smits, K.M.10
Khalid-De Bakker, C.A.11
Jonkers, D.M.12
Stockbrugger, R.W.13
Meijer, G.A.14
Oort, F.A.15
Iacobuzio-Donahue, C.16
Bierau, K.17
Herman, J.G.18
Baylin, S.B.19
Van Engeland, M.20
Schuebel, K.E.21
Ahuja, N.22
more..
-
17
-
-
0036613250
-
A genomic screen for genes upregulated by demethylation and histone deacetylase inhibition in human colorectal cancer
-
H. Suzuki, E. Gabrielson, W. Chen, R. Anbazhagan, M. van Engeland, M.P. Weijenberg, J.G. Herman, and S.B. Baylin A genomic screen for genes upregulated by demethylation and histone deacetylase inhibition in human colorectal cancer Nat. Genet. 31 2002 141 149
-
(2002)
Nat. Genet.
, vol.31
, pp. 141-149
-
-
Suzuki, H.1
Gabrielson, E.2
Chen, W.3
Anbazhagan, R.4
Van Engeland, M.5
Weijenberg, M.P.6
Herman, J.G.7
Baylin, S.B.8
-
18
-
-
12144291274
-
Epigenetic inactivation of SFRP genes allows constitutive WNT signaling in colorectal cancer
-
DOI 10.1038/ng1330
-
H. Suzuki, D.N. Watkins, K.W. Jair, K.E. Schuebel, S.D. Markowitz, W.D. Chen, T.P. Pretlow, B. Yang, Y. Akiyama, M. Van Engeland, M. Toyota, T. Tokino, Y. Hinoda, K. Imai, J.G. Herman, and S.B. Baylin Epigenetic inactivation of SFRP genes allows constitutive WNT signaling in colorectal cancer Nat. Genet. 36 2004 417 422 (Pubitemid 38437267)
-
(2004)
Nature Genetics
, vol.36
, Issue.4
, pp. 417-422
-
-
Suzuki, H.1
Watkins, D.N.2
Jair, K.-W.3
Schuebel, K.E.4
Markowitz, S.D.5
Chen, W.D.6
Pretlow, T.P.7
Yang, B.8
Akiyama, Y.9
Van Engeland, M.10
Toyota, M.11
Tokino, T.12
Hinoda, Y.13
Imai, K.14
Herman, J.G.15
Baylin, S.B.16
-
19
-
-
0028216769
-
Sample preparation and PCR amplification from paraffin-embedded tissues
-
C.E. Greer, C.M. Wheeler, and M.M. Manos Sample preparation and PCR amplification from paraffin-embedded tissues PCR Methods Appl. 3 1994 S113 S122
-
(1994)
PCR Methods Appl.
, vol.3
-
-
Greer, C.E.1
Wheeler, C.M.2
Manos, M.M.3
-
20
-
-
33751381986
-
Optimization of recovery of RNA from formalin-fixed, paraffin-embedded tissue
-
DOI 10.1097/01.pdm.0000213468.91139.2d, PII 0001960620061200000006
-
J.Y. Chung, T. Braunschweig, and S.M. Hewitt Optimization of recovery of RNA from formalin-fixed, paraffin-embedded tissue Diagn. Mol. Pathol. 15 2006 229 236 (Pubitemid 44813662)
-
(2006)
Diagnostic Molecular Pathology
, vol.15
, Issue.4
, pp. 229-236
-
-
Chung, J.-Y.1
Braunschweig, T.2
Hewitt, S.M.3
-
21
-
-
15044365131
-
DNA and RNA obtained from Bouin's fixed tissues
-
DOI 10.1136/jcp.2004.016477
-
S. Bonin, F. Petrera, J. Rosai, and G. Stanta DNA and RNA obtained from Bouin's fixed tissues J. Clin. Pathol. 58 2005 313 316 (Pubitemid 40380330)
-
(2005)
Journal of Clinical Pathology
, vol.58
, Issue.3
, pp. 313-316
-
-
Bonin, S.1
Petrera, F.2
Rosai, J.3
Stanta, G.4
-
22
-
-
5644228885
-
DNA extraction from archival formalin-fixed, paraffin-embedded tissues: Heat-induced retrieval in alkaline solution
-
DOI 10.1007/s00418-004-0693-x
-
S.R. Shi, R. Datar, C. Liu, L. Wu, Z. Zhang, R.J. Cote, and C.R. Taylor DNA extraction from archival formalin-fixed, paraffin-embedded tissues: heat-induced retrieval in alkaline solution Histochem. Cell Biol. 122 2004 211 218 (Pubitemid 39371490)
-
(2004)
Histochemistry and Cell Biology
, vol.122
, Issue.3
, pp. 211-218
-
-
Shi, S.-R.1
Datar, R.2
Liu, C.3
Wu, L.4
Zhang, Z.5
Cote, R.J.6
Taylor, C.R.7
-
23
-
-
0036733698
-
Extraction and amplification of DNA from formalin-fixed, paraffin-embedded tissues
-
DOI 10.1097/00022744-200209000-00015
-
L. Wu, N. Patten, C.T. Yamashiro, and B. Chui Extraction and amplification of DNA from formalin-fixed, paraffin-embedded tissues Appl. Immunohistochem. Mol. Morphol. 10 2002 269 274 (Pubitemid 34988538)
-
(2002)
Applied Immunohistochemistry and Molecular Morphology
, vol.10
, Issue.3
, pp. 269-274
-
-
Wu, L.1
Patten, N.2
Yamashiro, C.T.3
Chui, B.4
-
24
-
-
77649185945
-
Comparison of methods in the recovery of nucleic acids from archival formalin-fixed paraffin-embedded autopsy tissues
-
J.B. Okello, J. Zurek, A.M. Devault, M. Kuch, A.L. Okwi, N.K. Sewankambo, G.S. Bimenya, D. Poinar, and H.N. Poinar Comparison of methods in the recovery of nucleic acids from archival formalin-fixed paraffin-embedded autopsy tissues Anal. Biochem. 400 2010 110 117
-
(2010)
Anal. Biochem.
, vol.400
, pp. 110-117
-
-
Okello, J.B.1
Zurek, J.2
Devault, A.M.3
Kuch, M.4
Okwi, A.L.5
Sewankambo, N.K.6
Bimenya, G.S.7
Poinar, D.8
Poinar, H.N.9
-
25
-
-
0035511824
-
The suitability of DNA extracted from formalin-fixed, paraffin-embedded tissues for double differential polymerase chain reaction analysis
-
K. Bielawski, A. Zaczek, U. Lisowska, A. Dybikowska, A. Kowalska, and B. Falkiewicz The suitability of DNA extracted from formalin-fixed, paraffin-embedded tissues for double differential polymerase chain reaction analysis Int. J. Mol. Med. 8 2001 573 578
-
(2001)
Int. J. Mol. Med.
, vol.8
, pp. 573-578
-
-
Bielawski, K.1
Zaczek, A.2
Lisowska, U.3
Dybikowska, A.4
Kowalska, A.5
Falkiewicz, B.6
-
26
-
-
0035194394
-
Comparison of the DNA extraction methods for polymerase chain reaction amplification from formalin-fixed and paraffin-embedded tissues
-
DOI 10.1097/00019606-200112000-00009
-
Y. Sato, R. Sugie, B. Tsuchiya, T. Kameya, M. Natori, and K. Mukai Comparison of the DNA extraction methods for polymerase chain reaction amplification from formalin-fixed and paraffin-embedded tissues Diagn. Mol. Pathol. 10 2001 265 271 (Pubitemid 33130034)
-
(2001)
Diagnostic Molecular Pathology
, vol.10
, Issue.4
, pp. 265-271
-
-
Sato, Y.1
Sugie, R.2
Tsuchiya, B.3
Kameya, T.4
Natori, M.5
Mukai, K.6
-
27
-
-
67449163790
-
A well-based reverse-phase protein array applicable to extracts from formalin-fixed paraffin-embedded tissue
-
J.Y. Chung, S.J. Lee, Y. Kris, T. Braunschweig, J.L. Traicoff, and S.M. Hewitt A well-based reverse-phase protein array applicable to extracts from formalin-fixed paraffin-embedded tissue Proteomics Clin. Appl. 2 2008 1539 1547
-
(2008)
Proteomics Clin. Appl.
, vol.2
, pp. 1539-1547
-
-
Chung, J.Y.1
Lee, S.J.2
Kris, Y.3
Braunschweig, T.4
Traicoff, J.L.5
Hewitt, S.M.6
-
28
-
-
52949096084
-
Next-generation DNA sequencing methods
-
E.R. Mardis Next-generation DNA sequencing methods Annu. Rev. Genomics Hum. Genet. 9 2008 387 402
-
(2008)
Annu. Rev. Genomics Hum. Genet.
, vol.9
, pp. 387-402
-
-
Mardis, E.R.1
|