Impact of geographical isolation on genetic differentiation in insular and mainland populations of Weigela coraeensis (Caprifoliaceae) on Honshu and the Izu Islands

Journal of Biogeography

Volumn 39, Issue 5, 2012, Pages 901-917

  Yamada, Takayuki ^a   Maki, Masayuki ^a  

^a TOHOKU UNIVERSITY   (Japan)

Author keywords

Allozymes; Anagenesis; Founder effect; Genetic structure; Insular endemics; Island biogeography; Japan; Microsatellites; Stepping stone colonization

Indexed keywords

ALLOZYME; BAYESIAN ANALYSIS; BIOGEOGRAPHY; CLUSTER ANALYSIS; COLONIZATION; DICOTYLEDON; DISPERSAL; ECOLOGICAL MODELING; ENDEMIC SPECIES; GENE FLOW; GENETIC DIFFERENTIATION; GENETIC MARKER; GENETIC STRUCTURE; GEOGRAPHICAL REGION; POPULATION STRUCTURE;

CHUBU; HONSHU; IZU ISLANDS; JAPAN; SHIZUOKA [CHUBU];

CAPRIFOLIACEAE; WEIGELA CORAEENSIS;

EID: 84859837794     PISSN: 03050270     EISSN: 13652699     Source Type: Journal    
DOI: 10.1111/j.1365-2699.2011.02634.x     Document Type: Article

References (92)

1. Acevedo-Rodríguez, P. & Strong, M.T. (2008) Floristic richness and affinities in the West Indies. The Botanical Review, 74, 5-36.
2. Andrus, N., Tye, A., Nesom, G., Bogler, D., Lewis, C., Noyes, R., Jaramillo, P. & Francisco-Ortega, J. (2009) Phylogenetics of Darwiniothamnus (Asteraceae: Astereae) - molecular evidence for multiple origins in the endemic flora of the Galápagos Islands. Journal of Biogeography, 36, 1055-1069.
3. Austerlitz, F., Mariette, S., Machon, N., Gouyon, P.-H. & Godelle, B. (2000) Effects of colonization processes on genetic diversity: differences between annual plants and tree species. Genetics, 154, 1309-1321.
4. Baker, H.G. (1967) Support for Baker's law - as a rule. Evolution, 21, 853-856.
5. Baldwin, B.G. & Wagner, W.L. (2010) Hawaiian angiosperm radiations of North American origin. Annals of Botany, 105, 849-879.
6. Barrett, S.C.H. (1998) The reproductive biology and genetics of island plants. Evolution on islands (ed. by P.R. Grant ), pp. 18-34. Oxford University Press, Oxford.
7. Barton, N.H. (1998) Natural selection and random genetic drift as causes of evolution on islands. Evolution on islands (ed. by P.R. Grant ), pp. 102-123. Oxford University Press, Oxford.
8. Bellemain, E. & Ricklefs, R.E. (2008) Are islands the end of the colonization road? Trends in Ecology and Evolution, 23, 461-468.
9. Carine, M.A., Russell, S.J., Santos-Guerra, A. & Francisco-Ortega, J. (2004) Relationships of the Macaronesian and Mediterranean floras: molecular evidence for multiple colonizations into Macaronesia and back-colonization of the continent in Convolvulus (Convolvulaceae). American Journal of Botany, 91, 1070-1085.
10. Carlquist, S. (1974) Island biology. Columbia University Press, New York.
11. Cornuet, J.M. & Luikart, G. (1996) Description and power analysis of two tests for detecting recent population bottlenecks from allele frequency data. Genetics, 144, 2001-2014.
12. Crawford, D.J. (2010) Progenitor-derivative species pairs and plant speciation. Taxon, 59, 1413-1423.
13. Crawford, D.J., Ruiz, E., Stuessy, T.F., Tepe, E., Aqeveque, P., Gonzalez, F., Jensen, R.J., Anderson, G.J., Bernardello, G., Baeza, C.M., Swenson, U. & Silva O, M. (2001) Allozyme diversity in endemic flowering plant species of the Juan Fernandez Archipelago, Chile: ecological and historical factors with implications for conservation. American Journal of Botany, 88, 2195-2203.
14. DeJoode, D.R. & Wendel, J.F. (1992) Genetic diversity and origin of the Hawaiian Islands cotton, Gossypium tomentosum. American Journal of Botany, 79, 1311-1319.
15. Earl, D. (2010) Structure Harvester v0.56.4. Available at: .
16. El Mousadik, A. & Petit, R.J. (1996) High level of genetic differentiation for allelic richness among populations of the argan tree [Argania spinosa (L.) Skeels] endemic to Morocco. Theoretical and Applied Genetics, 92, 832-839.
17. Emerson, B.C. (2002) Evolution on oceanic islands: molecular phylogenetic approaches to understanding pattern and process. Molecular Ecology, 11, 951-966.
18. Evanno, G., Regnaut, S. & Goudet, J. (2005) Detecting the number of clusters of individuals using the software structure: a simulation study. Molecular Ecology, 14, 2611-2620.
19. Excoffier, L., Smouse, P.E. & Quattro, J.M. (1992) Analysis of molecular variance inferred from metric distances among DNA haplotypes: application to human mitochondrial DNA restriction data. Genetics, 131, 479-491.
20. Excoffier, L., Laval, G. & Schneider, S. (2005) Arlequin ver. 3.0: an integrated software package for population genetics data analysis. Evolutionary Bioinformatics Online, 1, 47-50.
21. Francisco-Ortega, J., Santos-Guerra, A., Kim, S.-C. & Crawford, D.J. (2000) Plant genetic diversity in the Canary Islands: a conservation perspective. American Journal of Botany, 87, 909-919.
22. Frankham, R. (1997) Do island populations have less genetic variation than mainland populations? Heredity, 78, 311-327.
23. Franks, S.J. (2010) Genetics, evolution, and conservation of island plants. Journal of Plant Biology, 53, 1-9.
24. Freville, H., Justy, F. & Olivieri, I. (2001) Comparative allozyme and microsatellite population structure in a narrow endemic plant species, Centaurea corymbosa Pourret (Asteraceae). Molecular Ecology, 10, 879-889.
25. Gao, L.-Z., Schaal, B.A., Zhang, C.-H., Jia, J.-Z. & Dong, Y.-S. (2002) Assessment of population genetic structure in common wild rice Oryza rufipogon Griff. using microsatellite and allozyme markers. Theoretical and Applied Genetics, 106, 173-180.
26. Gilpin, M.E. (1980) The role of stepping-stone islands. Theoretical Population Biology, 17, 247-253.
27. Givnish, T.J. (1998) Adaptive plant evolution on islands: classical patterns, molecular data, new insights. Evolution on islands (ed. by P.R. Grant ), pp. 281-304. Oxford University Press, Oxford.
28. Gómez, A., González-Martínez, S.C., Collada, C., Climent, J. & Gil, L. (2003) Complex population genetic structure in the endemic Canary Island pine revealed using chloroplast microsatellite markers. Theoretical and applied genetics, 107, 1123-1131.
29. Goudet, J. (1995) FSTAT (vers. 1.2): a computer program to calculate F-statistics. The Journal of Heredity, 86, 485-486.
30. Hayashi, M. & Chiba, S. (2000) Intraspecific diversity of mitochondrial DNA in the land snail Euhadra peliomphala (Bradybaenidae). Biological Journal of the Linnean Society, 70, 391-401.
31. Hurlbert, S.H. (1971) The nonconcept of species diversity: a critique and alternative parameters. Ecology, 52, 577-586.
32. Iguchi, K. & Nishida, M. (2000) Genetic biogeography among insular populations of the amphidromous fish Plecoglossus altivelis assessed from mitochondrial DNA analysis. Conservation Genetics, 1, 147-156.
33. Inoue, K. (1993) Evolution of mutualism in plant-pollinator interactions on islands. Journal of Biosciences, 18, 525-536.
34. Inoue, K. & Kawahara, T. (1990) Allozyme differentiation and genetic structure in island and mainland Japanese population of Campanula punctata (Campanulaceae). American Journal of Botany, 77, 1440-1448.
35. Inoue, K., Maki, M. & Masuda, M. (1995) Evolution of Campanula flowers in relation to insect pollinators on islands. Floral biology (ed. by D.G. Lloyd and S.C.H. Barrett ), pp. 377-400. Chapman and Hall, New York.
36. Ito, M. (1998) Origin and evolution of endemic plants of the Bonin (Ogasawara) Islands. Researches on Population Ecology, 40, 205-212.
37. Iwata, H., Kamijo, T. & Tsumura, Y. (2006) Assessment of genetic diversity of native species in Izu Islands for a discriminate choice of source populations: implications for revegetation of volcanically devastated sites. Conservation Genetics, 7, 399-413.
38. Japan Meteorological Agency (2005) National catalogue of the active volcanoes in Japan, 3rd edn. Japan Meteorological Business Support Center, Tokyo (in Japanese).
39. Jensen, J.L., Bohonak, A.J. & Kelley, S.T. (2005) Isolation by distance, web service. BMC Genetics, 6, 13. Version 3.16. Available at: .
40. Juan, C., Emerson, B.C., Oromí, P. & Hewit, G.M. (2000) Colonization and diversification: towards a phylogeographic synthesis for the Canary Islands. Trends in Ecology and Evolution, 15, 104-109.
41. Kaneoka, I., Isshiki, N. & Zashu, S. (1970) K-Ar ages of the Izu-Bonin Islands. Geochemical Journal, 4, 53-60.
42. Karig, D.E. (1975) Basin genesis in the Philippine Sea. Initial Reports of the Deep Sea Drilling Project, Vol. 31 (ed. by D.E. Karig and J.C. Ingle ), pp. 857-879. United States Government Printing Office, Washington DC.
43. Kato, S., Iwata, H., Tsumura, Y. & Mukai, Y. (2007) Distribution of S-alleles in island populations of flowering cherry, Prunus lannesiana var. speciosa. Genes & Genetic Systems, 82, 66-75.
44. Kato, S., Iwata, H., Tsumura, Y. & Mukai, Y. (2011) Genetic structure of island populations of Prunus lannesiana var. speciosa revealed by chloroplast DNA, AFLP and nuclear SSR loci analyses. Journal of Plant Research, 124, 11-23.
45. Kim, S.C., Crawford, D.J., Francisco-Ortega, J. & Santos-Guerra, A. (1999) Adaptive radiation and genetic differentiation in the woody Sonchus alliance (Asteraceae: Sonchinae) in the Canary Islands. Plant Systematics and Evolution, 215, 101-118.
46. Kimura, J.I., Kent, A.J.R., Rowe, M.C., Katakuse, M., Nakano, F., Hacker, B.R., van Keken, P.E., Kawabata, H. & Stern, R.J. (2010) Origin of cross-chain geochemical variation in Quaternary lavas from the northern Izu arc: using a quantitative mass balance approach to identify mantle sources and mantle wedge processes. Geochemistry, Geophysics, Geosystems, 11, Q10011.
47. Kitazato, H. (1997) Paleogeographic changes in central Honshu, Japan, during the late Cenozoic in relation to the collision of the Izu-Ogasawara Arc with the Honshu Arc. The Island Arc, 6, 144-157.
48. Langella, O. (1999) Populations version 1.2.30. Available at: .
49. Lind, M.I., Ingvarsson, P.K., Johansson, H., Hall, D. & Johansson, F. (2010) Gene flow and selection on phenotypic plasticity in an island system of Rana temporaria. Evolution, 65, 684-697.
50. Luikart, G. & Cornuet, J.M. (1998) Empirical evaluation of a test for identifying recently bottlenecked populations from allele frequency data. Conservation Biology, 12, 228-237.
51. Luikart, G., Allendorf, F.W., Piry, S. & Cornuet, J.M. (1998a) Molecular genetic test identifies endangered populations. Conservation Biology, 12, 228-237.
52. Luikart, G., Allendorf, F.W., Cornuet, J.M. & Sherwin, W.B. (1998b) Distortion of allele frequency distributions provides a test for recent population bottlenecks. Journal of Heredity, 89, 238-247.
53. Maki, M. (2003) Population genetics of threatened wild plants in Japan. Journal of Plant Research, 116, 169-174.
54. Maki, M., Horie, S. & Yokoyama, J. (2002) Comparison of genetic diversity between narrowly endemic shrub Menziesia goyozanensis and its widespread congener M. pentandra (Ericaceae). Conservation Genetics, 3, 421-425.
55. Mantel, N. (1967) The detection of disease clustering and a generalized regression approach. Cancer Research, 27, 209-220.
56. Maruyama, T. & Fuerst, P.A. (1985) Population bottlenecks and non equilibrium models in population genetics. II. Number of alleles in a small population that was formed by a recent bottleneck. Genetics, 111, 675-689.
57. Mauchamp, A., Aldaz, I., Ortiz, E. & Valdebenito, H. (1998) Threatened species, a re-evaluation of the status of eight endemic plants of the Galápagos. Biodiversity and Conservation, 7, 97-107.
58. Nei, M., Maruyama, T. & Chakraborty, R. (1975) The bottleneck effect and genetic variability in populations. Evolution, 29, 1-10.
59. Nei, M., Tajima, F. & Tateno, Y. (1983) Accuracy of estimated phylogenetic trees from molecular data. II. Gene frequency data. Journal of Molecular Evolution, 19, 153-170.
60. Ohba, H. & Akiyama, S. (2002) A synopsis of the endemic species and infraspecific taxa of vascular plants of the Izu islands. Memoirs of the National Science Museum, 38, 119-160.
61. Ohwi, J. (1949) Weigela fragrans Ohwi sp. nov. from the island of Hachijo in Idzu. The Journal of Japanese Botany, 24, 75. (in Japanese).
62. Oiki, S., Kawahara, T., Inoue, K., Ohara, M. & Maki, M. (2001) Random amplified polymorphic DNA (RAPD) variation among populations of the insular endemic plant Campanula microdonta (Campanulaceae). Annals of Botany, 87, 661-667.
63. Okamoto, T., Motokawa, J., Toda, M. & Hikida, T. (2006) Parapatric distribution of the lizards Plestiodon (formerly Eumeces) latiscutatus and P. japonicus (Reptilia: Scincidae) around the Izu Peninsula, central Japan, and its biogeographic implications. Zoological Science, 23, 419-425.
64. Ono, M., Kobayashi, S. & Kawakubo, N. (1986) Present situation of endangered plant species in the Bonin (Ogasawara) Islands. Ogasawara Research, 12, 1-32.
65. Piry, S., Luikart, G. & Cornuet, J.M. (1999) Bottleneck: a computer program for detecting recent reductions in the effective population size using allele frequency data. Journal of Heredity, 90, 502-503.
66. Pritchard, J.K., Stephens, M. & Donnelly, P. (2000) Inference of population structure using multilocus genotype data. Genetics, 155, 945-959.
67. R Development Core Team (2008) R: a language and environment for statistical computing. R Foundation for Statistical Computing, Vienna, Austria. Available at: .
68. Raymond, M. & Rousset, F. (1995) GENEPOP (version 1.2): population genetics software for exact tests and ecumenicism. Journal of Heredity, 86, 248-249.
69. Rice, W.R. (1989) Analyzing tables of statistical tests. Evolution, 43, 223-225.
70. Richardson, B.J., Baverstock, P.R. & Adams, M. (1986) Allozyme electrophoresis: a handbook for animal systematics and population studies. Academic Press, New York.
71. Rousset, F. (1997) Genetic differentiation and estimation of gene flow from F-statistics under isolation by distance. Genetics, 145, 1219-1228.
72. Schuelke, M. (2000) An economic method for the fluorescent labelling of PCR fragments. Nature Biotechnology, 18, 233-234.
73. Stuessy, T.F. (2007) Evolution of specific and genetic diversity during ontogeny of island floras: the importance of understanding process for interpreting island biogeographic patterns. Biogeography in a changing world (ed. by M.C. Ebach and R.S. Tangney ), pp. 117-133. CRC Press, Boca Raton, FL.
74. Stuessy, T.F., Crawford, D.J., Marticorena, C. & Rodríguez, R. (1998) Island biogeography of angiosperms of the Juan Fernandez archipelago. Evolution and speciation of island plants (ed. by T.F. Stuessy and M. Ono ), pp. 121-138. Cambridge University Press, Cambridge.
75. Stuessy, T.F., Jakubowsky, G., Gómez, R.S., Pfosser, M., Schlüter, P.M., Fer, T., Sun, B.Y. & Kato, H. (2006) Anagenetic evolution in island plants. Journal of Biogeography, 33, 1259-1265.
76. Takahashi, H. (1971) Fossa Magna element plants. Research Report of the Kanagawa Prefectural Museum Natural History, 2, 1-63 (in Japanese).
77. Tsumura, Y., Tomaru, N., Suyama, Y., Na'iem, M. & Ohba, K. (1990) Laboratory manual of isozyme analysis. Bulletin of Tsukuba University Forests, 6, 63-95 (in Japanese).
78. Uchida, K., Tsumura, Y. & Ohba, K. (1991) Inheritance of isozyme variants in leaf tissues of Hinoki, Chamaecyparis obtusa, and allozyme diversity of two natural forests. Japanese Journal of Breeding, 41, 11-24.
79. Wagner, W.L., Herbst, D.R. & Sohmer, S.H. (1990) Manual of the flowering plants of Hawai'i. Bishop Museum Special Publication 83. University of Hawaii Press, Honolulu.
80. Watanabe, Y. & Chiba, S. (2001) High within-population mitochondrial DNA variation due to microvicariance and population mixing in the land snail Euhadra quaesita (Pulmonata: Bradybaenidae). Molecular Ecology, 10, 2635-2645.
81. Weir, B.S. & Cockerham, C.C. (1984) Estimating F-statistics for the analysis of population structure. Evolution, 38, 1358-1370.
82. Wendel, J.F. & Weeden, N.F. (1989) Visualization and interpretation of plant isozyme. Isozymes in plant biology (ed. by D.E. Soltis and P.E. Soltis ), pp. 5-45. Dioscorides Press, Portland, OR.
83. White, C., Selkoe, K.A., Watson, J., Siegel, D.A., Zacherl, D.C. & Toonen, R.J. (2010) Ocean currents help explain population genetic structure. Proceedings of the Royal Society B: Biological Sciences, 277, 1685-1694.
84. Wilson, G.A. & Rannala, B. (2003) Bayesian inference of recent migration rates using multilocus genotypes. Genetics, 163, 1177-1191.
85. Witter, M.S. & Carr, G.D. (1988) Adaptive radiation and genetic differentiation in the Hawaiian silversword alliance (Compositae: Madiinae). Evolution, 42, 1278-1287.
86. Woolfit, M. & Bromham, L. (2005) Population size and molecular evolution on islands. Proceedings of the Royal Society B: Biological Sciences, 272, 2277-2282.
87. Wright, S. (1931) Evolution in Mendelian populations. Genetics, 16, 97-159.
88. Wright, S. (1943) Isolation by distance. Genetics, 28, 114-138.
89. Yamada, T. & Maki, M. (2008) Isolation and characterization of microsatellite loci from Weigela coraeensis (Caprifoliaceae). Molecular Ecology Resources, 8, 155-157.
90. Yamada, T., Kashiwagi, T., Sawamura, M. & Maki, M. (2010) Floral differentiation among insular and mainland populations of Weigela coraeensis (Caprifoliaceae). Plant Systematics and Evolution, 288, 113-125.
91. Yasuda, N., Nagai, S., Hamaguchi, M., Okaji, K., Gérard, K. & Nadaoka, K. (2009) Gene flow of Acanthaster planci (L.) in relation to ocean currents revealed by microsatellite analysis. Molecular Ecology, 18, 1574-1590.
92. Yeh, F.C., Yang, R.-C., Boyle, T.B.J., Ye, Z.-H. & Mao, J.X. (1997) POPGENE, the user-friendly shareware for population genetic analysis. Molecular Biology and Biotechnology Centre, University of Alberta, Canada.