-
1
-
-
56549101959
-
Alternative isoform regulation in human tissue transcriptomes
-
DOI 10.1038/nature07509, PII NATURE07509
-
Wang ET, Sandberg R, Luo S, Khrebtukova I, Zhang L, Mayr C et al (2008) Alternative isoform regulation in human tissue transcriptomes. Nature 456:470-476 (Pubitemid 352759009)
-
(2008)
Nature
, vol.456
, Issue.7221
, pp. 470-476
-
-
Wang, E.T.1
Sandberg, R.2
Luo, S.3
Khrebtukova, I.4
Zhang, L.5
Mayr, C.6
Kingsmore, S.F.7
Schroth, G.P.8
Burge, C.B.9
-
2
-
-
78049416081
-
Alternative premRNA splicing regulation in cancer: Pathways and programs unhinged
-
David CJ, Manley JL (2010) Alternative premRNA splicing regulation in cancer: pathways and programs unhinged. Genes Dev 24: 2343-2364
-
(2010)
Genes Dev
, vol.24
, pp. 2343-2364
-
-
David, C.J.1
Manley, J.L.2
-
3
-
-
34548758543
-
Splicing in disease: Disruption of the splicing code and the decoding machinery
-
DOI 10.1038/nrg2164, PII NRG2164
-
Wang GS, Cooper TA (2007) Splicing in disease: disruption of the splicing code and the decoding machinery. Nat Rev Genet 8: 749-761 (Pubitemid 47429207)
-
(2007)
Nature Reviews Genetics
, vol.8
, Issue.10
, pp. 749-761
-
-
Wang, G.-S.1
Cooper, T.A.2
-
4
-
-
0034256020
-
Alternative pre-mRNA splicing: The logic of combinatorial control
-
DOI 10.1016/S0968-0004(00)01604-2, PII S0968000400016042
-
Smith CW, Valcarcel J (2000) Alternative premRNA splicing: the logic of combinatorial control. Trends Biochem Sci 25:381-388 (Pubitemid 30497249)
-
(2000)
Trends in Biochemical Sciences
, vol.25
, Issue.8
, pp. 381-388
-
-
Smith, C.W.J.1
Valcarcel, J.2
-
5
-
-
38349127601
-
Combinatorial control of exon recognition
-
Hertel KJ (2008) Combinatorial control of exon recognition. J Biol Chem 283:1211-1215
-
(2008)
J Biol Chem
, vol.283
, pp. 1211-1215
-
-
Hertel, K.J.1
-
7
-
-
33845270164
-
The search for alternative splicing regulators: New approaches offer a path to a splicing code
-
Bonano VI, Oltean S, Brazas RM, Garcia-Blanco MA (2006) The search for alternative splicing regulators: new approaches offer a path to a splicing code. RNA 12:2073-2079
-
(2006)
RNA
, vol.12
, pp. 2073-2079
-
-
Bonano, V.I.1
Oltean, S.2
Brazas, R.M.3
Garcia-Blanco, M.A.4
-
8
-
-
77956119780
-
Functional selection and systematic analysis of intronic splicing elements identify active sequence motifs and associated splicing factors
-
Culler SJ, Hoff KG, Voelker RB, Berglund JA, Smolke CD (2010) Functional selection and systematic analysis of intronic splicing elements identify active sequence motifs and associated splicing factors. Nucleic Acids Res 38: 5152-5165
-
(2010)
Nucleic Acids Res
, vol.38
, pp. 5152-5165
-
-
Culler, S.J.1
Hoff, K.G.2
Voelker, R.B.3
Berglund, J.A.4
Smolke, C.D.5
-
9
-
-
4344627862
-
Regulated tissue-specific alternative splicing of enhanced green fluorescent protein transgenes conferred by α-tropomyosin regulatory elements in transgenic mice
-
DOI 10.1074/jbc.M405380200
-
Ellis PD, Smith CW, Kemp P (2004) Regulated tissue-specific alternative splicing of enhanced green fl uorescent protein transgenes conferred by alpha-tropomyosin regulatory elements in transgenic mice. J Biol Chem 279:36660-36669 (Pubitemid 39129012)
-
(2004)
Journal of Biological Chemistry
, vol.279
, Issue.35
, pp. 36660-36669
-
-
Ellis, P.D.1
Smith, C.W.J.2
Kemp, P.3
-
10
-
-
33747739192
-
RBM4 interacts with an intronic element and stimulates tau exon 10 inclusion
-
DOI 10.1074/jbc.M603971200
-
Kar A, Havlioglu N, Tarn WY, Wu JY (2006) RBM4 interacts with an intronic element and stimulates tau exon 10 inclusion. J Biol Chem 281:24479-24488 (Pubitemid 44274222)
-
(2006)
Journal of Biological Chemistry
, vol.281
, Issue.34
, pp. 24479-24488
-
-
Kar, A.1
Havlioglu, N.2
Tarn, W.-Y.3
Wu, J.Y.4
-
11
-
-
77955873421
-
Visualization and genetic analysis of alternative splicing regulation in vivo using fl uorescence reporters in transgenic Caenorhabditis elegans
-
Kuroyanagi H, Ohno G, Sakane H, Maruoka H, Hagiwara M (2010) Visualization and genetic analysis of alternative splicing regulation in vivo using fl uorescence reporters in transgenic Caenorhabditis elegans . Nat Protoc 5:1495-1517
-
(2010)
Nat Protoc
, vol.5
, pp. 1495-1517
-
-
Kuroyanagi, H.1
Ohno, G.2
Sakane, H.3
Maruoka, H.4
Hagiwara, M.5
-
12
-
-
77955662560
-
An alternative splicing network links cellcycle control to apoptosis
-
Moore MJ, Wang Q, Kennedy CJ, Silver PA (2010) An alternative splicing network links cellcycle control to apoptosis. Cell 142:625-636
-
(2010)
Cell
, vol.142
, pp. 625-636
-
-
Moore, M.J.1
Wang, Q.2
Kennedy, C.J.3
Silver, P.A.4
-
13
-
-
34548707119
-
A doublereporter splicing assay for determining splicing efficiency in mammalian cells
-
Nasim MT, Eperon IC (2006) A doublereporter splicing assay for determining splicing efficiency in mammalian cells. Nat Protoc 1:1022-1028
-
(2006)
Nat Protoc
, vol.1
, pp. 1022-1028
-
-
Nasim, M.T.1
Eperon, I.C.2
-
14
-
-
33646863265
-
Identification of RNA-binding proteins that regulate FGFR2 splicing through the use of sensitive and specific dual color fluorescence minigene assays
-
DOI 10.1261/rna.34906
-
Newman EA, Muh SJ, Hovhannisyan RH, Warzecha CC, Jones RB et al (2006) Identification of RNA-binding proteins that regulate FGFR2 splicing through the use of sensitive and specific dual color fl uorescence minigene assays. RNA 12:1129-1141 (Pubitemid 43788130)
-
(2006)
RNA
, vol.12
, Issue.6
, pp. 1129-1141
-
-
Newman, E.A.1
Muh, S.J.2
Hovhannisyan, R.H.3
Warzecha, C.C.4
Jones, R.B.5
Mckeehan, W.L.6
Carstens, R.P.7
-
15
-
-
48749100692
-
Regulation of CD45 alternative splicing by heterogeneous ribonucleoprotein, hnRNPLL
-
Oberdoerffer S, Moita LF, Neems D, Freitas RP, Hacohen N, Rao A (2008) Regulation of CD45 alternative splicing by heterogeneous ribonucleoprotein, hnRNPLL. Science 321:686-691
-
(2008)
Science
, vol.321
, pp. 686-691
-
-
Oberdoerffer, S.1
Moita, L.F.2
Neems, D.3
Freitas, R.P.4
Hacohen, N.5
Rao, A.6
-
16
-
-
47549109962
-
Dunning rat prostate adenocarcinomas and alternative splicing reporters: Powerful tools to study epithelial plasticity in prostate tumors in vivo
-
Oltean S, Febbo PG, Garcia-Blanco MA (2008) Dunning rat prostate adenocarcinomas and alternative splicing reporters: powerful tools to study epithelial plasticity in prostate tumors in vivo. Clin Exp Metastasis 25:611-619
-
(2008)
Clin Exp Metastasis
, vol.25
, pp. 611-619
-
-
Oltean, S.1
Febbo, P.G.2
Garcia-Blanco, M.A.3
-
17
-
-
33845891582
-
A bichromatic fl uorescent reporter for cellbased screens of alternative splicing
-
Orengo JP, Bundman D, Cooper TA (2006) A bichromatic fl uorescent reporter for cellbased screens of alternative splicing. Nucleic Acids Res 34:e148
-
(2006)
Nucleic Acids Res
, vol.34
-
-
Orengo, J.P.1
Bundman, D.2
Cooper, T.A.3
-
18
-
-
0036909533
-
Identification of cells deficient in signaling-induced alternative splicing by use of somatic cell genetics
-
Sheives P, Lynch KW (2002) Identification of cells deficient in signaling-induced alternative splicing by use of somatic cell genetics. RNA 8:1473-1481 (Pubitemid 36009018)
-
(2002)
RNA
, vol.8
, Issue.12
, pp. 1473-1481
-
-
Sheives, P.1
Lynch, K.W.2
-
19
-
-
77956205314
-
Splicing reporter mice revealed the evolutionally conserved switching mechanism of tissue-specific alternative exon selection
-
Takeuchi A, Hosokawa M, Nojima T, Hagiwara M (2010) Splicing reporter mice revealed the evolutionally conserved switching mechanism of tissue-specific alternative exon selection. PLoS One 5:e10946
-
(2010)
PLoS One
, vol.5
-
-
Takeuchi, A.1
Hosokawa, M.2
Nojima, T.3
Hagiwara, M.4
-
20
-
-
10944256767
-
Systematic identification and analysis of exonic splicing silencers
-
DOI 10.1016/j.cell.2004.11.010, PII S0092867404010566
-
Wang Z, Rolish ME, Yeo G, Tung V, Mawson M, Burge CB (2004) Systematic identification and analysis of exonic splicing silencers. Cell 119:831-845 (Pubitemid 40017689)
-
(2004)
Cell
, vol.119
, Issue.6
, pp. 831-845
-
-
Wang, Z.1
Rolish, M.E.2
Yeo, G.3
Tung, V.4
Mawson, M.5
Burge, C.B.6
-
21
-
-
33748660487
-
SRp54 (SFRS11), a regulator for tau exon 10 alternative splicing identified by an expression cloning strategy
-
DOI 10.1128/MCB.00739-06
-
Wu JY, Kar A, Kuo D, Yu B, Havlioglu N (2006) SRp54 (SFRS11), a regulator for tau exon 10 alternative splicing identified by an expression cloning strategy. Mol Cell Biol 26:6739-6747 (Pubitemid 44387625)
-
(2006)
Molecular and Cellular Biology
, vol.26
, Issue.18
, pp. 6739-6747
-
-
Wu, J.Y.1
Kar, A.2
Kuo, D.3
Yu, B.4
Havlioglu, N.5
-
22
-
-
0035158371
-
An in vivo reporter system for measuring increased inclusion of exon 7 in SMN2 mRNA: Potential therapy of SMA
-
DOI 10.1038/sj.gt.3301550
-
Zhang ML, Lorson CL, Androphy EJ, Zhou J (2001) An in vivo reporter system for measuring increased inclusion of exon 7 in SMN2 mRNA: potential therapy of SMA. Gene Ther 8:1532-1538 (Pubitemid 33061891)
-
(2001)
Gene Therapy
, vol.8
, Issue.20
, pp. 1532-1538
-
-
Zhang, M.L.1
Lorson, C.L.2
Androphy, E.J.3
Zhou, J.4
-
23
-
-
49649108878
-
A high-throughput screening strategy identifies cardiotonic steroids as alternative splicing modulators
-
Stoilov P, Lin CH, Damoiseaux R, Nikolic J, Black DL (2008) A high-throughput screening strategy identifies cardiotonic steroids as alternative splicing modulators. Proc Natl Acad Sci USA 105:11218-11223
-
(2008)
Proc Natl Acad Sci USA
, vol.105
, pp. 11218-11223
-
-
Stoilov, P.1
Lin, C.H.2
Damoiseaux, R.3
Nikolic, J.4
Black, D.L.5
-
24
-
-
77949408107
-
Rapid-response splicing reporter screens identify differential regulators of constitutive and alternative splicing
-
Younis I, Berg M, Kaida D, Dittmar K, Wang C, Dreyfuss G (2010) Rapid-response splicing reporter screens identify differential regulators of constitutive and alternative splicing. Mol Cell Biol 30:1718-1728
-
(2010)
Mol Cell Biol
, vol.30
, pp. 1718-1728
-
-
Younis, I.1
Berg, M.2
Kaida, D.3
Dittmar, K.4
Wang, C.5
Dreyfuss, G.6
-
25
-
-
84859857174
-
Methods in molecular biology
-
Totowa, NJ
-
Harwood AJ (1996) Methods in molecular biology. Humana, Totowa, NJ, pp 93-96
-
(1996)
Humana
, pp. 93-96
-
-
Harwood, A.J.1
-
26
-
-
11144328200
-
A novel intronic cis element, ISE/ISS-3, regulates rat fibroblast growth factor receptor 2 splicing through activation of an upstream exon and repression of a downstream exon containing a noncanonical branch point sequence
-
DOI 10.1128/MCB.25.1.250-263.2005
-
Hovhannisyan RH, Carstens RP (2005) A novel intronic cis element, ISE/ISS-3, regulates rat fibroblast growth factor receptor 2 splicing through activation of an upstream exon and repression of a downstream exon containing a noncanonical branch point sequence. Mol Cell Biol 25:250-263 (Pubitemid 40039816)
-
(2005)
Molecular and Cellular Biology
, vol.25
, Issue.1
, pp. 250-263
-
-
Hovhannisyan, R.H.1
Carstens, R.P.2
-
27
-
-
61649087689
-
ESRP1 and ESRP2 are epithelial cell-type-specific regulators of FGFR2 splicing
-
Warzecha CC, Sato T, Nabet B, Hogenesch JB, Carstens RP (2009) ESRP1 and ESRP2 are epithelial cell-type-specific regulators of FGFR2 splicing. Mol Cell 33:591-601
-
(2009)
Mol Cell
, vol.33
, pp. 591-601
-
-
Warzecha, C.C.1
Sato, T.2
Nabet, B.3
Hogenesch, J.B.4
Carstens, R.P.5
-
28
-
-
0033003760
-
A simple statistical parameter for use in evaluation and validation of high throughput screening assays
-
DOI 10.1177/108705719900400206
-
Zhang JH, Chung TD, Oldenburg KR (1999) A simple statistical parameter for use in evaluation and validation of high throughput screening assays. J Biomol Screen 4:67-73 (Pubitemid 29278954)
-
(1999)
Journal of Biomolecular Screening
, vol.4
, Issue.2
, pp. 67-73
-
-
Zhang, J.-H.1
Chung, T.D.Y.2
Oldenburg, K.R.3
|