Genetic characterization of the Wyeomyia group of orthobunyaviruses and their phylogenetic relationships

Journal of General Virology

Volumn 93, Issue 5, 2012, Pages 1023-1034

  Chowdhary, Rashmi ^a   Street, Craig ^a   da Rosa, Amelia Travassos ^b   Nunes, Marcio R T ^c   Tee, Kok Keng ^a   Hutchison, Stephen K ^d   Vasconcelos, Pedro F C ^c   Tesh, Robert B ^b   Ian Lipkin, W ^a,e   Briese, Thomas ^a,f  

^a Och Spine at New York Presbyterian Hospitals   (United States)

^b University of Texas Medical Branch School of Medicine   (United States)

^c INSTITUTO EVANDRO CHAGAS   (Brazil)

^d 454 Roche Life Sciences ^*  (United States)

^e Mailman School of Public Health Columbia University ^*  (United States)

^f NONE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

INTERFERON;

ANHEMBI VIRUS; ARTICLE; CACHOEIRA PORTEIRA VIRUS; GENE SEQUENCE; GENETIC ANALYSIS; IMMUNE RESPONSE; MACAUA VIRUS; NONHUMAN; NUCLEOTIDE SEQUENCE; ORTHOBUNYAVIRUS; PHYLOGENY; PRIORITY JOURNAL; SOROROCA VIRUS; TACUNDUBA VIRUS; TAIASSUI VIRUS; VIRAL GENETICS; VIRUS GENOME; VIRUS IDENTIFICATION; VIRUS VIRULENCE; WYEOMYIA BUNYAVIRUS;

AMINO ACID SEQUENCE; ANIMALS; CLUSTER ANALYSIS; GENE REARRANGEMENT; HUMANS; MOLECULAR SEQUENCE DATA; ORTHOBUNYAVIRUS; PHYLOGENY; REASSORTANT VIRUSES; RNA, VIRAL; SEQUENCE ANALYSIS, DNA; SEQUENCE HOMOLOGY, AMINO ACID; SYNTENY;

BUNYAMWERA VIRUS; BUNYAVIRIDAE; IACO VIRUS; ORTHOBUNYAVIRUS; WYEOMYIA;

EID: 84859829510     PISSN: 00221317     EISSN: 14652099     Source Type: Journal    
DOI: 10.1099/vir.0.039479-0     Document Type: Article

References (72)

1. Aguilar, P. V., Morrison, A. C., Rocha, C., Watts, D. M., Beingolea, L., Suarez, V., Vargas, J., Cruz, C., Guevara, C. & other authors (2010). Guaroa virus infection among humans in Bolivia and Peru. Am J Trop Med Hyg 83, 714-721.
2. Aitken, T. H. & Spence, L. (1963). Virus transmission studies with Trinidadian mosquitoes. III. Cache Valley virus. West Indian Med J 12, 128-132.
3. Aitken, T. H., Spence, L., Jonkers, A. H. & Anderson, C. R. (1968). Wyeomyia-virus isolations in Trinidad, West Indies. Am J Trop Med Hyg 17, 886-888.
4. Akashi, H., Gay, M., Ihara, T. & Bishop, D. H. (1984). Localized conserved regions of the S RNA gene products of bunyaviruses are revealed by sequence analyses of the Simbu serogroup Aino virus. Virus Res 1, 51-63.
5. Akashi, H., Kaku, Y., Kong, X. & Pang, H. (1997). Antigenic and genetic comparisons of Japanese and Australian Simbu serogroup viruses: evidence for the recovery of natural virus reassortants. Virus Res 50, 205-213.
6. Altschul, S. F., Gish, W., Miller, W., Myers, E. W. & Lipman, D. J. (1990). Basic local alignment search tool. J Mol Biol 215, 403-410.
7. Anderson, C. R., Aitken, T. H., Spence, L. P. & Downs, W. G. (1960). Kairi virus, a new virus from Trinidadian forest mosquitoes. Am J Trop Med Hyg 9, 70-72.
8. Beaty, B. J., Calisher, C. H. & Shope, R. E. (1989). Arboviruses. In Diagnostic Procedures for Viral, Rickettsial, and Chlamydial Infections, 6th edn, pp. 797-855. Edited by N. J. Schmidt & R. W. Emmons. Washington, DC: American Public Health Association.
9. Beaty, B. J., Calisher, C. H. & Shope, R. E. (1995). Arboviruses. In Diagnostic Procedures for Viral, Rickettsial, and Chlamydial Infections, 7th edn, pp. 189-212. Edited by E. H. Lennette, D. A. Lennette & E. T. Lennette. Washington, DC: American Public Health Association.
10. Bishop, D. H. L. (1996). Biology and molecular biology of bunyaviruses. In The Bunyaviridae, pp. 19-61. Edited by R. M. Elliott. New York, London: Plenum Press.
11. Bishop, D. H. L., Calisher, C. H., Casals, J., Chumakov, M. P., Gaidamovich, S. Y., Hannoun, C., Lvov, D. K., Marshall, I. D., Oker-Blom, N. & other authors (1980). Bunyaviridae. Intervirology 14, 125-143.
12. Blakqori, G., Delhaye, S., Habjan, M., Blair, C. D., Sánchez-Vargas, I., Olson, K. E., Attarzadeh-Yazdi, G., Fragkoudis, R., Kohl, A. & other authors (2007). La Crosse bunyavirus nonstructural protein NSs serves to suppress the type I interferon system of mammalian hosts. J Virol 81, 4991-4999.
13. Bowen, M. D., Jackson, A. O., Bruns, T. D., Hacker, D. L. & Hardy, J. L. (1995). Determination and comparative analysis of the small RNA genomic sequences of California encephalitis, Jamestown Canyon, Jerry Slough, Melao, Keystone and Trivittatus viruses (Bunyaviridae, genus Bunyavirus, California serogroup). J Gen Virol 76, 559-572.
14. Bridgen, A., Weber, F., Fazakerley, J. K. & Elliott, R. M. (2001). Bunyamwera bunyavirus nonstructural protein NSs is a nonessential gene product that contributes to viral pathogenesis. Proc Natl Acad Sci U S A 98, 664-669.
15. Briese, T., Rambaut, A. & Lipkin, W. I. (2004). Analysis of the medium (M) segment sequence of Guaroa virus and its comparison to other orthobunyaviruses. J Gen Virol 85, 3071-3077.
16. Briese, T., Bird, B., Kapoor, V., Nichol, S. T. & Lipkin, W. I. (2006). Batai and Ngari viruses: M segment reassortment and association with severe febrile disease outbreaks in East Africa. J Virol 80, 5627-5630.
17. Briese, T., Kapoor, V. & Lipkin, W. I. (2007). Natural M-segment reassortment in Potosi and Main Drain viruses: implications for the evolution of orthobunyaviruses. Arch Virol 152, 2237-2247.
18. Brockus, C. L. & Grimstad, P. R. (2001). Comparative analysis of G1 glycoprotein-coding sequences of Cache Valley virus (Bunyaviridae: Bunyavirus) isolates. Virus Genes 22, 133-139.
19. Calisher, C. H. (1996). History, classification, and taxonomy of viruses in the family Bunyaviridae. In The Bunyaviridae, pp. 1-17. Edited by R. M. Elliott. New York, London: Plenum Press.
20. Calisher, C. H. & Karabatsos, N. (1988). Arbovirus serogroups: definition and geographic distribution. In The Arboviruses: Epidemiology and Ecology, pp. 19-57. Edited by T. P. Monath. Boca Raton, Florida: CRC Press.
21. Calisher, C. H., Oro, J. G., Lord, R. D., Sabattini, M. S. & Karabatsos, N. (1988). Kairi virus identified from a febrile horse in Argentina. Am J Trop Med Hyg 39, 519-521.
22. Campbell, W. P. & Huang, C. (1996). Detection of California serogroup Bunyaviruses in tissue culture and mosquito pools by PCR. J Virol Methods 57, 175-179.
23. Casals, J. & Whitman, L. (1960). A new antigenic group of arthropodborne viruses: the Bunyamwera group. Am J Trop Med Hyg 9, 73-77.
24. Causey, O. R., Causey, C. E., Maroja, O. M. & Macedo, D. G. (1961). The isolation of arthropod-borne viruses, including members of two hitherto undescribed serological groups, in the Amazon region of Brazil. Am J Trop Med Hyg 10, 227-249.
25. Chenna, R., Sugawara, H., Koike, T., Lopez, R., Gibson, T. J., Higgins, D. G. & Thompson, J. D. (2003). Multiple sequence alignment with the CLUSTAL series of programs. Nucleic Acids Res 31, 3497-3500.
26. Clarke, D. H. & Casals, J. (1958). Techniques for hemagglutination and hemagglutination-inhibition with arthropod-borne viruses. Am J Trop Med Hyg 7, 561-573.
27. Claros, M. G. & von Heijne, G. (1994). TopPred II: an improved software for membrane protein structure predictions. Comput Appl Biosci 10, 685-686.
28. de Souza Lopes, O., de Abreu Sacchetta, L., Fonseca, I. E. M. & Lacerda, J. P. G. (1975). Bertioga (Guama group) and Anhembi (Bunyamwera group), two new arboviruses isolated in São Paulo, Brazil. Am J Trop Med Hyg 24, 131-134.
29. Downs, W. G., Spence, L., Aitken, T. H. & Whitman, L. (1961). Cache Valley virus, isolated from a Trinidadian mosquito, Aedes scapularis. West Indian Med J 10, 13-15.
30. Drummond, A. J., Ashton, B., Buxton, S., Cheung, M., Cooper, A., Heled, J., Kearse, M., Moir, R., Stones-Havas, S. & other authors (2011). Geneious v5.5. http://www.geneious.com
31. Dunn, E. F., Pritlove, D. C. & Elliott, R. M. (1994). The S RNA genome segments of Batai, Cache Valley, Guaroa, Kairi, Lumbo, Main Drain and Northway bunyaviruses: sequence determination and analysis. J Gen Virol 75, 597-608.
32. Eifan, S. A. & Elliott, R. M. (2009). Mutational analysis of the Bunyamwera orthobunyavirus nucleocapsid protein gene. J Virol 83, 11307-11317.
33. Estrada, D. F. & de Guzman, R. N. (2011). Structural characterization of the Crimean-Congo hemorrhagic fever virus Gn tail provides insight into virus assembly. J Biol Chem 286, 21678-21686.
34. Fauquet, C. M., Mayo, M. A., Maniloff, J., Desselberger, U. & Ball, L. A. (editors) (2005). Virus Taxonomy: Eighth Report of the International Committee on Taxonomy of Viruses. London, San Diego: Elsevier Academic Press.
35. Fazakerley, J. K., Gonzalez-Scarano, F., Strickler, J., Dietzschold, B., Karush, F. & Nathanson, N. (1988). Organization of the middle RNA segment of snowshoe hare Bunyavirus. Virology 167, 422-432.
36. Forshey, B. M., Guevara, C., Laguna-Torres, V. A., Cespedes, M., Vargas, J., Gianella, A., Vallejo, E., Madrid, C., Aguayo, N. & other authors (2010). Arboviral etiologies of acute febrile illnesses in Western South America, 2000-2007. PLoS Negl Trop Dis 4, e787.
37. Gerrard, S. R., Li, L., Barrett, A. D. & Nichol, S. T. (2004). Ngari virus is a Bunyamwera virus reassortant that can be associated with large outbreaks of hemorrhagic fever in Africa. J Virol 78, 8922-8926.
38. Huang, C., Shope, R. E., Spargo, B. & Campbell, W. P. (1996). The S RNA genomic sequences of Inkoo, San Angelo, Serra do Navio, South River and Tahyna bunyaviruses. J Gen Virol 77, 1761-1768.
39. Iroegbu, C. U. & Pringle, C. R. (1981). Genetic interactions among viruses of the Bunyamwera complex. J Virol 37, 383-394.
40. Jin, H. & Elliott, R. M. (1992). Mutagenesis of the L protein encoded by Bunyamwera virus and production of monospecific antibodies. J Gen Virol 73, 2235-2244.
41. Käll, L., Krogh, A. & Sonnhammer, E. L. (2004). A combined transmembrane topology and signal peptide prediction method. J Mol Biol 338, 1027-1036.
42. Klimas, R. A., Thompson, W. H., Calisher, C. H., Clark, G. G., Grimstad, P. R. & Bishop, D. H. (1981). Genotypic varieties of La Crosse virus isolated from different geographic regions of the continental United States and evidence for a naturally occurring intertypic recombinant La Crosse virus. Am J Epidemiol 114, 112-131.
43. Krogh, A., Larsson, B., von Heijne, G. & Sonnhammer, E. L. (2001). Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes. J Mol Biol 305, 567-580.
44. Lambert, A. J. & Lanciotti, R. S. (2009). Consensus amplification and novel multiplex sequencing method for S segment species identification of 47 viruses of the Orthobunyavirus, Phlebovirus, and Nairovirus genera of the family Bunyaviridae. J Clin Microbiol 47, 2398-2404.
45. Leonard, V. H. J., Kohl, A., Osborne, J. C., McLees, A. & Elliott, R. M. (2005). Homotypic interaction of Bunyamwera virus nucleocapsid protein. J Virol 79, 13166-13172.
46. Léonard, V. H., Kohl, A., Hart, T. J. & Elliott, R. M. (2006). Interaction of Bunyamwera orthobunyavirus NSs protein withmediator protein MED8: amechanism for inhibiting the interferon response. J Virol 80, 9667-9675.
47. Margulies, M., Egholm, M., Altman, W. E., Attiya, S., Bader, J. S., Bemben, L. A., Berka, J., Braverman, M. S., Chen, Y. J. & other authors (2005). Genome sequencing in microfabricated high-density picolitre reactors. Nature 437, 376-380.
48. Mohamed, M., McLees, A. & Elliott, R. M. (2009). Viruses in the Anopheles A, Anopheles B, and Tete serogroups in the Orthobunyavirus genus (family Bunyaviridae) do not encode an NSs protein. J Virol 83, 7612-7618.
49. Mores, C. N., Turell, M. J., Dyer, J. & Rossi, C. A. (2009). Phylogenetic relationships among orthobunyaviruses isolated from mosquitoes captured in Peru. Vector Borne Zoonotic Dis 9, 25-32.
50. Müller, R., Poch, O., Delarue, M., Bishop, D. H. & Bouloy, M. (1994). Rift Valley fever virus L segment: correction of the sequence and possible functional role of newly identified regions conserved in RNA-dependent polymerases. J Gen Virol 75, 1345-1352.
51. Nielsen, H. & Krogh, A. (1998). Prediction of signal peptides and signal anchors by a hidden Markov model. In Proceedings of the Sixth International Conference on Intelligent Systems for Molecular Biology (ISMB6), Montreal, Canada, pp. 122-130. Palo Alto, CA: AAAI Press.
52. Nielsen, H., Engelbrecht, J., Brunak, S. & von Heijne, G. (1997). Identification of prokaryotic and eukaryotic signal peptides and prediction of their cleavage sites. Protein Eng 10, 1-6.
53. Nunes, M. R., Travassos da Rosa, A. P., Weaver, S. C., Tesh, R. B. & Vasconcelos, P. F. (2005). Molecular epidemiology of group C viruses (Bunyaviridae, Orthobunyavirus) isolated in the Americas. J Virol 79, 10561-10570.
54. Pinheiro, F. P., Travassos da Rosa, A. & Vasconcelos, P. F. (1994). Guaroa and other Bunyamwera group fevers. In Handbook of Zoonoses, Section B: Viral Zoonosis, 2nd edn, pp. 217-218. Edited by G. W. Beran. Boca Raton, FL: CRC Press.
55. Plassmeyer, M. L., Soldan, S. S., Stachelek, K. M., Roth, S. M., Martín-García, J. & González-Scarano, F. (2007). Mutagenesis of the La Crosse Virus glycoprotein supports a role for Gc (1066-1087) as the fusion peptide. Virology 358, 273-282.
56. Poch, O., Sauvaget, I., Delarue, M. & Tordo, N. (1989). Identification of four conserved motifs among the RNA-dependent polymerase encoding elements. EMBO J 8, 3867-3874.
57. Quan, P. L., Palacios, G., Jabado, O. J., Conlan, S., Hirschberg, D. L., Pozo, F., Jack, P. J., Cisterna, D., Renwick, N. & other authors (2007). Detection of respiratory viruses and subtype identification of influenza A viruses by GreeneChipResp oligonucleotide microarray. J Clin Microbiol 45, 2359-2364.
58. Reese, S. M., Blitvich, B. J., Blair, C. D., Geske, D., Beaty, B. J. & Black, W. C., IV (2008). Potential for La Crosse virus segment reassortment in nature. Virol J 5, 164.
59. Rice, P., Longden, I. & Bleasby, A. (2000). EMBOSS: the European Molecular Biology Open Software Suite. Trends Genet 16, 276-277.
60. Roca-Garcia, M. (1944). The isolation of three neurotropic viruses from forest mosquitoes in eastern Colombia. J Infect Dis 75, 160-169.
61. Saeed, M. F., Wang, H., Nunes, M., Vasconcelos, P. F., Weaver, S. C., Shope, R. E., Watts, D. M., Tesh, R. B. & Barrett, A. D. (2000). Nucleotide sequences and phylogeny of the nucleocapsid gene of Oropouche virus. J Gen Virol 81, 743-748.
62. Saeed, M. F., Li, L., Wang, H., Weaver, S. C. & Barrett, A. D. (2001a). Phylogeny of the Simbu serogroup of the genus Bunyavirus. J Gen Virol 82, 2173-2181.
63. Saeed, M. F., Wang, H., Suderman, M., Beasley, D. W., Travassos da Rosa, A., Li, L., Shope, R. E., Tesh, R. B. & Barrett, A. D. (2001b). Jatobal virus is a reassortant containing the small RNA of Oropouche virus. Virus Res 77, 25-30.
64. Schmaljohn, C. S. & Hooper, J. W. (2001). Bunyaviridae: the viruses and their replication. In Fields Virology, 4th edn, pp. 1581-1602. Edited by D. M. Knipe & P. M. Howley. Philadelphia, PA: Lippincott Williams & Wilkins.
65. Srihongse, S. & Johnson, C. M. (1965). Wyeomyia subgroup of arbovirus: isolation from man. Science 149, 863-864.
66. Tamura, K., Peterson, D., Peterson, N., Stecher, G., Nei, M. & Kumar, S. (2011). MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 28, 2731-2739.
67. Travassos da Rosa, J. F., Travassos da Rosa, A., Vasconcelos, P. F., Pinheiro, F. P., Rodrigues, S. G., Travassos da Rosa, E. S., Dias, L. B. & Cruz, A. C. (1998). Arboviruses isolated in the Evandro Chagas Institute, including some described for the first time in the Brazilian Arnazon region, their known hosts, and their pathology for man. In An Overview of Arbovirology in Brazil and Neighbouring Countries, pp. 19-31. Edited by A. Travassos da Rosa, J. F. Travassos da Rosa & P. F. Vasconcelos. Belem, Brazil: Instituto Evandro Chagas.
68. van Knippenberg, I., Carlton-Smith, C. & Elliott, R. M. (2010). The Nterminus of Bunyamwera orthobunyavirus NSs protein is essential for interferon antagonism. J Gen Virol 91, 2002-2006.
69. Vasconcelos, P. F., Travassos da Rosa, A., Degallier, N., Travassos da Rosa, J. F. & Pinheiro, F. P. (1992). Clinical and ecoepidemiological situation of human arboviruses in Brazilian Amazonia. Cienc Cult 44, 117-124.
70. Vasconcelos, P. F., Travassos da Rosa, A., Pinheiro, F. P., Shope, R. E., Travassos da Rosa, J. F., Rodrigues, S. G., Degallier, N. & Travassos da Rosa, E. S. (1998). Arboviruses pathogenic for man in Brazil. In An Overview of Arbovirology in Brazil and Neighbouring Countries, pp. 72-99. Edited by A. Travassos da Rosa, J. F. Travassos da Rosa & P. F. Vasconcelos. Belem, Brazil: Instituto Evandro Chagas.
71. Weber, F., Bridgen, A., Fazakerley, J. K., Streitenfeld, H., Kessler, N., Randall, R. E. & Elliott, R. M. (2002). Bunyamwera bunyavirus nonstructural protein NSs counteracts the induction of alpha/beta interferon. J Virol 76, 7949-7955.
72. Yanase, T., Aizawa, M., Kato, T., Yamakawa, M., Shirafuji, H. & Tsuda, T. (2010). Genetic characterization of Aino and Peaton virus field isolates reveals a genetic reassortment between these viruses in nature. Virus Res 153, 1-7.