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Volumn 63, Issue 3, 2012, Pages 768-776

Gene turnover and differential retention in the relaxin/insulin-like gene family in primates

Author keywords

Birth and death; Differential retention; Gene duplication; Gene family evolution; Insulin like peptide; Primates; Relaxin

Indexed keywords

INSULIN; RELAXIN; SIGNAL PEPTIDE;

EID: 84859826546     PISSN: 10557903     EISSN: 10959513     Source Type: Journal    
DOI: 10.1016/j.ympev.2012.02.011     Document Type: Article
Times cited : (12)

References (53)
  • 1
    • 0027365039 scopus 로고
    • Cloning of a cDNA for a novel insulin- like peptide of the testicular Leydig cells
    • Adham I.M., Burkhardt E., Benahmed M., Engel W. Cloning of a cDNA for a novel insulin- like peptide of the testicular Leydig cells. J. Biol. Chem. 1993, 268:26668-26672.
    • (1993) J. Biol. Chem. , vol.268 , pp. 26668-26672
    • Adham, I.M.1    Burkhardt, E.2    Benahmed, M.3    Engel, W.4
  • 3
    • 0036250811 scopus 로고    scopus 로고
    • Alu repeats and human genomic diversity
    • Batzer M.A., Deininger P.L. Alu repeats and human genomic diversity. Nat. Rev. Genet. 2002, 3:370-379.
    • (2002) Nat. Rev. Genet. , vol.3 , pp. 370-379
    • Batzer, M.A.1    Deininger, P.L.2
  • 5
    • 23044521031 scopus 로고    scopus 로고
    • Insulin through the ages: phylogeny of a growth promoting and metabolic regulatory hormone
    • Chan S.J., Steiner D.F. Insulin through the ages: phylogeny of a growth promoting and metabolic regulatory hormone. Am. Zool. 2000, 40:222-231.
    • (2000) Am. Zool. , vol.40 , pp. 222-231
    • Chan, S.J.1    Steiner, D.F.2
  • 6
    • 0029095815 scopus 로고
    • Cloning of a new member of the insulin gene superfamily (INSL4) expressed in human placenta
    • Chassin D., Laurent A., Janneau J.L., Berger R., Bellet D. Cloning of a new member of the insulin gene superfamily (INSL4) expressed in human placenta. Genomics 1995, 29:465-470.
    • (1995) Genomics , vol.29 , pp. 465-470
    • Chassin, D.1    Laurent, A.2    Janneau, J.L.3    Berger, R.4    Bellet, D.5
  • 7
    • 0024450089 scopus 로고
    • Structure of rhesus monkey relaxin predicted by analysis of the single-copy rhesus monkey relaxin gene
    • Crawford R.J., Hammond V.E., Roche P.J., Johnston P.D., Tregear G.W. Structure of rhesus monkey relaxin predicted by analysis of the single-copy rhesus monkey relaxin gene. J. Mol. Endocrinol. 1989, 3:169-174.
    • (1989) J. Mol. Endocrinol. , vol.3 , pp. 169-174
    • Crawford, R.J.1    Hammond, V.E.2    Roche, P.J.3    Johnston, P.D.4    Tregear, G.W.5
  • 8
    • 26444603772 scopus 로고    scopus 로고
    • Two rounds of whole genome duplication in the ancestral vertebrate
    • Dehal P., Boore J.L. Two rounds of whole genome duplication in the ancestral vertebrate. PLoS Biol. 2005, 3:e314.
    • (2005) PLoS Biol. , vol.3
    • Dehal, P.1    Boore, J.L.2
  • 9
    • 14644430471 scopus 로고    scopus 로고
    • ProbCons: probabilistic consistency-based multiple sequence alignment
    • Do C.B., Mahabhashyam M.S., Brudno M., Batzoglou S. ProbCons: probabilistic consistency-based multiple sequence alignment. Genome Res. 2005, 15:330-340.
    • (2005) Genome Res. , vol.15 , pp. 330-340
    • Do, C.B.1    Mahabhashyam, M.S.2    Brudno, M.3    Batzoglou, S.4
  • 10
    • 13244255415 scopus 로고    scopus 로고
    • MUSCLE: a multiple sequence alignment method with reduced time and space complexity
    • Edgar R.C. MUSCLE: a multiple sequence alignment method with reduced time and space complexity. BMC Bioinformatics 2004, 5:113.
    • (2004) BMC Bioinformatics , vol.5 , pp. 113
    • Edgar, R.C.1
  • 11
    • 0028354924 scopus 로고
    • Characterization of two relaxin genes in the chimpanzee
    • Evans B.A., Fu P., Tregear G.W. Characterization of two relaxin genes in the chimpanzee. J. Endocrinol. 1994, 140:385-392.
    • (1994) J. Endocrinol. , vol.140 , pp. 385-392
    • Evans, B.A.1    Fu, P.2    Tregear, G.W.3
  • 12
    • 74049156770 scopus 로고    scopus 로고
    • Relaxin gene family in teleosts: phylogeny, syntenic mapping, selective constraint, and expression analysis
    • Good-Avila S.V., Yegorov S., Harron S., Bogerd J., Glen P., Ozon J., Wilson B.C. Relaxin gene family in teleosts: phylogeny, syntenic mapping, selective constraint, and expression analysis. BMC Evol. Biol. 2009, 9:293.
    • (2009) BMC Evol. Biol. , vol.9 , pp. 293
    • Good-Avila, S.V.1    Yegorov, S.2    Harron, S.3    Bogerd, J.4    Glen, P.5    Ozon, J.6    Wilson, B.C.7
  • 13
    • 4744342460 scopus 로고    scopus 로고
    • Accelerated evolution of the electron transport chain in anthropoid primates
    • Grossman L.I., Wildman D.E., Schmidt T.R., Goodman M. Accelerated evolution of the electron transport chain in anthropoid primates. Trends Genet. 2004, 20:578-585.
    • (2004) Trends Genet. , vol.20 , pp. 578-585
    • Grossman, L.I.1    Wildman, D.E.2    Schmidt, T.R.3    Goodman, M.4
  • 15
    • 37249061101 scopus 로고    scopus 로고
    • Accelerated rate of gene gain and loss in primates
    • Hahn M.W., Demuth J.P., Han S.G. Accelerated rate of gene gain and loss in primates. Genetics 2007, 177:1941-1949.
    • (2007) Genetics , vol.177 , pp. 1941-1949
    • Hahn, M.W.1    Demuth, J.P.2    Han, S.G.3
  • 17
    • 79951679557 scopus 로고    scopus 로고
    • Evolution of the relaxin/insulin-like gene subfamily in placental mammals: implications for its early evolution
    • Hoffmann F.G., Opazo J.C. Evolution of the relaxin/insulin-like gene subfamily in placental mammals: implications for its early evolution. J. Mol. Evol. 2011, 72:72-79.
    • (2011) J. Mol. Evol. , vol.72 , pp. 72-79
    • Hoffmann, F.G.1    Opazo, J.C.2
  • 18
    • 39749109407 scopus 로고    scopus 로고
    • Rapid rates of lineage-specific gene duplication and deletion in the alpha-globin gene family
    • Hoffmann F.G., Opazo J.C., Storz J.F. Rapid rates of lineage-specific gene duplication and deletion in the alpha-globin gene family. Mol. Biol. Evol. 2008, 25:591-602.
    • (2008) Mol. Biol. Evol. , vol.25 , pp. 591-602
    • Hoffmann, F.G.1    Opazo, J.C.2    Storz, J.F.3
  • 20
    • 0021514136 scopus 로고
    • Relaxin gene expression in human ovaries and the predicted structure of a human preprorelaxin by analysis of cDNA clones
    • Hudson P., John M., Crawford R., Haralambidis J., Scanlon D., Gorman J., Tregear G., Shine J., Niall H. Relaxin gene expression in human ovaries and the predicted structure of a human preprorelaxin by analysis of cDNA clones. EMBO J. 1984, 3:2333-2339.
    • (1984) EMBO J. , vol.3 , pp. 2333-2339
    • Hudson, P.1    John, M.2    Crawford, R.3    Haralambidis, J.4    Scanlon, D.5    Gorman, J.6    Tregear, G.7    Shine, J.8    Niall, H.9
  • 21
    • 0030808589 scopus 로고    scopus 로고
    • Biology of the relaxin-like factor (RLF)
    • Ivell R. Biology of the relaxin-like factor (RLF). Rev. Reprod. 1997, 2:133-138.
    • (1997) Rev. Reprod. , vol.2 , pp. 133-138
    • Ivell, R.1
  • 22
    • 13444259388 scopus 로고    scopus 로고
    • TREEFINDER: a powerful graphical analysis environment for molecular phylogenetics
    • Jobb G., von Haeseler A., Strimmer K. TREEFINDER: a powerful graphical analysis environment for molecular phylogenetics. BMC Evol. Biol. 2004, 4:18.
    • (2004) BMC Evol. Biol. , vol.4 , pp. 18
    • Jobb, G.1    von Haeseler, A.2    Strimmer, K.3
  • 23
    • 68049142320 scopus 로고    scopus 로고
    • Multiple alignment of DNA sequences with MAFFT
    • Katoh K., Asimenos G., Toh H. Multiple alignment of DNA sequences with MAFFT. Methods Mol. Biol. 2009, 537:39-64.
    • (2009) Methods Mol. Biol. , vol.537 , pp. 39-64
    • Katoh, K.1    Asimenos, G.2    Toh, H.3
  • 26
    • 57749184792 scopus 로고    scopus 로고
    • Timing of genome duplications relative to the origin of the vertebrates: did cyclostomes diverge before or after?
    • Kuraku S., Meyer A., Kuratani S. Timing of genome duplications relative to the origin of the vertebrates: did cyclostomes diverge before or after?. Mol. Biol. Evol. 2009, 26:47-59.
    • (2009) Mol. Biol. Evol. , vol.26 , pp. 47-59
    • Kuraku, S.1    Meyer, A.2    Kuratani, S.3
  • 27
    • 31144442881 scopus 로고    scopus 로고
    • Automatic assessment of alignment quality
    • Lassmann T., Sonnhammer E.L. Automatic assessment of alignment quality. Nucleic Acids Res. 2005, 33:7120-7128.
    • (2005) Nucleic Acids Res. , vol.33 , pp. 7120-7128
    • Lassmann, T.1    Sonnhammer, E.L.2
  • 28
    • 63349085641 scopus 로고    scopus 로고
    • Kalign2: high-performance multiple alignment of protein and nucleotide sequences allowing external features
    • Lassmann T., Frings O., Sonnhammer E.L. Kalign2: high-performance multiple alignment of protein and nucleotide sequences allowing external features. Nucleic Acids Res. 2009, 37:858-865.
    • (2009) Nucleic Acids Res. , vol.37 , pp. 858-865
    • Lassmann, T.1    Frings, O.2    Sonnhammer, E.L.3
  • 30
    • 0036190720 scopus 로고    scopus 로고
    • Chorionic gonadotropin has a recent origin within primates and an evolutionary history of selection
    • Maston G.A., Ruvolo M. Chorionic gonadotropin has a recent origin within primates and an evolutionary history of selection. Mol. Biol. Evol. 2002, 19:320-335.
    • (2002) Mol. Biol. Evol. , vol.19 , pp. 320-335
    • Maston, G.A.1    Ruvolo, M.2
  • 31
    • 0032733930 scopus 로고    scopus 로고
    • Gene and genome duplications in vertebrates: the one-to-four (-to-eight in fish) rule and the evolution of novel gene functions
    • Meyer A., Schartl M. Gene and genome duplications in vertebrates: the one-to-four (-to-eight in fish) rule and the evolution of novel gene functions. Curr. Opin. Cell. Biol. 1999, 11:699-704.
    • (1999) Curr. Opin. Cell. Biol. , vol.11 , pp. 699-704
    • Meyer, A.1    Schartl, M.2
  • 33
    • 27944477670 scopus 로고    scopus 로고
    • Concerted and birth-and-death evolution of multigene families
    • Nei M., Rooney A.P. Concerted and birth-and-death evolution of multigene families. Annu. Rev. Genet. 2005, 39:121-152.
    • (2005) Annu. Rev. Genet. , vol.39 , pp. 121-152
    • Nei, M.1    Rooney, A.P.2
  • 34
    • 0034623005 scopus 로고    scopus 로고
    • T-Coffee: a novel method for fast and accurate multiple sequence alignment
    • Notredame C., Higgins D.G., Heringa J. T-Coffee: a novel method for fast and accurate multiple sequence alignment. J. Mol. Biol. 2000, 302:205-217.
    • (2000) J. Mol. Biol. , vol.302 , pp. 205-217
    • Notredame, C.1    Higgins, D.G.2    Heringa, J.3
  • 36
    • 33750040019 scopus 로고    scopus 로고
    • Three insulin-relaxin-like genes in Ciona intestinalis
    • Olinski R.P., Dahlberg C., Thorndyke M., Hallböök F. Three insulin-relaxin-like genes in Ciona intestinalis. Peptides 2006, 27:2535-2546.
    • (2006) Peptides , vol.27 , pp. 2535-2546
    • Olinski, R.P.1    Dahlberg, C.2    Thorndyke, M.3    Hallböök, F.4
  • 37
    • 28944431533 scopus 로고    scopus 로고
    • Conserved synteny between the Ciona genome and human paralogons identifies large duplication events in the molecular evolution of the insulin-relaxin gene family
    • Olinski R.P., Lundin L.G., Hallböök F. Conserved synteny between the Ciona genome and human paralogons identifies large duplication events in the molecular evolution of the insulin-relaxin gene family. Mol. Biol. Evol. 2006, 23:10-22.
    • (2006) Mol. Biol. Evol. , vol.23 , pp. 10-22
    • Olinski, R.P.1    Lundin, L.G.2    Hallböök, F.3
  • 38
    • 77249144000 scopus 로고    scopus 로고
    • Mammalian recombination hot spots: properties, control and evolution
    • Paigen K., Petkov P. Mammalian recombination hot spots: properties, control and evolution. Nat. Rev. Genet. 2010, 11:221-233.
    • (2010) Nat. Rev. Genet. , vol.11 , pp. 221-233
    • Paigen, K.1    Petkov, P.2
  • 39
    • 28344445518 scopus 로고    scopus 로고
    • New Insights into biological roles of relaxin and relaxin-related peptides
    • Park J.I., Chang C.L., Hsu S.Y. New Insights into biological roles of relaxin and relaxin-related peptides. Rev. Endocr. Metab. Disord. 2005, 6:291-296.
    • (2005) Rev. Endocr. Metab. Disord. , vol.6 , pp. 291-296
    • Park, J.I.1    Chang, C.L.2    Hsu, S.Y.3
  • 41
    • 57649131054 scopus 로고    scopus 로고
    • Regulation of receptor signaling by relaxin A chain motifs: derivation of pan-specific and LGR7-specific human relaxin analogs
    • Park J.I., Semyonov J., Yi W., Chang C.L., Hsu S.Y. Regulation of receptor signaling by relaxin A chain motifs: derivation of pan-specific and LGR7-specific human relaxin analogs. J. Biol. Chem. 2008, 283:32099-32109.
    • (2008) J. Biol. Chem. , vol.283 , pp. 32099-32109
    • Park, J.I.1    Semyonov, J.2    Yi, W.3    Chang, C.L.4    Hsu, S.Y.5
  • 42
    • 0041386108 scopus 로고    scopus 로고
    • MrBayes 3: Bayesian phylogenetic inference under mixed models
    • Ronquist F., Huelsenbeck J.P. MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 2003, 19:1572-1574.
    • (2003) Bioinformatics , vol.19 , pp. 1572-1574
    • Ronquist, F.1    Huelsenbeck, J.P.2
  • 43
    • 61349161851 scopus 로고    scopus 로고
    • The human insulin superfamily of polypeptide hormones
    • Litwack, G. (Ed.), Insulin and IGFs. Academic Press
    • Shabanpoor, F., Separovic, F., Wade, J.D., 2009. The human insulin superfamily of polypeptide hormones. In: Litwack, G. (Ed.), Insulin and IGFs. Academic Press, pp. 1-31.
    • (2009) , pp. 1-31
    • Shabanpoor, F.1    Separovic, F.2    Wade, J.D.3
  • 44
    • 3042610399 scopus 로고    scopus 로고
    • Relaxin's physiological roles and other diverse actions
    • Sherwood O.D. Relaxin's physiological roles and other diverse actions. Endocr. Rev. 2004, 25:205-234.
    • (2004) Endocr. Rev. , vol.25 , pp. 205-234
    • Sherwood, O.D.1
  • 45
    • 0036623258 scopus 로고    scopus 로고
    • An approximately unbiased test of phylogenetic tree selection
    • Shimodaira H. An approximately unbiased test of phylogenetic tree selection. Syst. Biol. 2002, 51:492-508.
    • (2002) Syst. Biol. , vol.51 , pp. 492-508
    • Shimodaira, H.1
  • 46
    • 79951675256 scopus 로고    scopus 로고
    • Hedges, S.B., Kumar, S. (Eds.), Primates (Primates). Oxford University Press
    • Steiper, M.E., Young, N.M., 2009. In: Hedges, S.B., Kumar, S. (Eds.), Primates (Primates). Oxford University Press, pp. 482-486.
    • (2009) , pp. 482-486
    • Steiper, M.E.1    Young, N.M.2
  • 47
    • 45949105543 scopus 로고    scopus 로고
    • DIALIGN-TX: greedy and progressive approaches for segment-based multiple sequence alignment
    • Subramanian A.R., Kaufmann M., Morgenstern B. DIALIGN-TX: greedy and progressive approaches for segment-based multiple sequence alignment. Algorithms Mol. Biol. 2008, 3:6.
    • (2008) Algorithms Mol. Biol. , vol.3 , pp. 6
    • Subramanian, A.R.1    Kaufmann, M.2    Morgenstern, B.3
  • 48
    • 33747847779 scopus 로고    scopus 로고
    • PAL2NAL: robust conversion of protein sequence alignments into the corresponding codon alignments
    • Suyama M., Torrents D., Bork P. PAL2NAL: robust conversion of protein sequence alignments into the corresponding codon alignments. Nucleic Acids Res. 2006, 34:W609-612.
    • (2006) Nucleic Acids Res. , vol.34
    • Suyama, M.1    Torrents, D.2    Bork, P.3
  • 49
    • 0032964297 scopus 로고    scopus 로고
    • BLAST 2 sequences, a new tool for comparing protein and nucleotide sequences
    • Tatusova T.A., Madden T.L. BLAST 2 sequences, a new tool for comparing protein and nucleotide sequences. FEMS Microbiol. Lett. 1999, 174:247-250.
    • (1999) FEMS Microbiol. Lett. , vol.174 , pp. 247-250
    • Tatusova, T.A.1    Madden, T.L.2
  • 52
    • 34547803197 scopus 로고    scopus 로고
    • PAML 4: phylogenetic analysis by maximum likelihood
    • Yang Z. PAML 4: phylogenetic analysis by maximum likelihood. Mol Biol Evol 2007, 24:1586-1591.
    • (2007) Mol Biol Evol , vol.24 , pp. 1586-1591
    • Yang, Z.1


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