Impact of coastal wetland cultivation on microbial biomass, ammonia-oxidizing bacteria, gross N transformation and N 2O and NO potential production

Biology and Fertility of Soils

Volumn 48, Issue 4, 2012, Pages 363-369

  Jin, Xiaobin ^a   Huang, Jingyu ^b   Zhou, Yinkang ^a  

^a NANJING UNIVERSITY   (China)

^b HOHAI UNIVERSITY   (China)

Author keywords

Coastal wetland; Gross mineralization rate; Gross nitrification rate; N loss; Phospholipid fatty acid; Soil ammonia oxidizing bacteria (AOB)

Indexed keywords

BACTERIUM; BIOMASS; COASTAL WETLAND; COMMUNITY COMPOSITION; CULTIVATION; FATTY ACID; FUNGUS; LEACHING; MICROBIAL ACTIVITY; MICROBIAL COMMUNITY; MINERALIZATION; NITRIC OXIDE; NITROGEN; NITROUS OXIDE; PHOSPHOLIPID; POLYMERASE CHAIN REACTION; POPULATION SIZE; SALT; SOIL EMISSION; SOIL MICROORGANISM; TRANSFORMATION;

ACTINOBACTERIA; BACTERIA (MICROORGANISMS); NITROSOMONADALES;

EID: 84859761367     PISSN: 01782762     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00374-011-0631-8     Document Type: Article

References (29)

1. Barraclough D, Puri G (1995) The use of 15 N pool dilution and enrichment to separate the heterotrophic and autotrophic pathways of nitrification. Soil Biol Biochem 27: 17-22.
2. Bligh EG, Dyer WJ (1959) A rapid method of total lipid extraction and purification. Can J Biochem Physiol 37: 911-917.
3. Booth MS, Stark JM, Rastetter EB (2005) Controls on nitrogen cycling in terrestrial ecosystems: a synthetic analysis of literature data. Ecol Monogr 75: 139-157.
4. Chu HY, Fujii T, Morimoto S, Lin XG, Yagi K (2008) Population size and specific nitrification potential of soil ammonia-oxidizing bacteria under long-term fertilizer management. Soil Biol Biochem 40: 1960-1963.
5. 2O and NO production potential in an intensively cultivated sandy loam soil. Water Air Soil Pollut. doi: 10.1007/s11270-010-0328-x.
6. Frostegård A, Bååth E, Tunlid A (1993) Shifts in the structure of soil microbial communities in limed forests as revealed by phospholipid fatty acid analysis. Soil Biol Biochem 25: 723-730.
7. Harris JA (2003) Measurements of the soil microbial community for estimating the success of restoration. Eur J Soil Sci 54: 801-808.
8. Hart SC, Stark JM, Davidson EA, Firestone MK (1994) Nitrogen mineralization, immobilization, and nitrification. In: Hart SC, Stark JM, Davidson EA, Firestone MK (eds) Methods of soil analysis part 2: microbiological and biochemical properties. Soil Science Society of American, Madison, WI, pp 985-1018.
9. Hedrick DB, Peacock A, Stephan JR, Macnaughton SJ, Brüggemann J, White DC (2000) Measuring microbial community diversity using polar lipid fatty acid and denaturing gradient gel electrophoresis data. J Microbiol Meth 41: 235-248.
10. Hermansson A, Lindgren PE (2001) Quantification of ammonia oxidizing bacteria in arable soil by real-time PCR. Appl Environ Microbiol 67: 972-976.
11. Killham K (1986) Heterotrophic nitrification. In: Prosser JI (ed) Nitrification. IRL Press, Oxford, UK, pp 117-126.
12. Kirkham D, Bartholomew WV (1954) Equations for following nutrient transformations in soil, utilizing tracer data. Soil Sci Soc Am Pro 18: 33-34.
13. Kowalchuk GA, Stephen JR (2001) Ammonia-oxidizing bacteria: a model for molecular microbial ecology. Annu Rev Microbiol 55: 485-529.
14. Martens R (1995) Current methods for measuring microbial biomass C in soil: potentials and limitations. Biol Ferti Soils 19: 87-99.
15. Mendum TA, Sockett RE, Hirsch PR (1999) Use of molecular and isotopic techniques to monitor the response of autotrophic ammonia-oxidizing populations of the subdivision of the class Proteobacteria in arable soils to nitrogen fertilizer. Appl Environ Microbiol 65: 4155-4162.
16. 2O emissions, soil quality and crop production in a sandy loam soil. Soil Biol Biochem 37: 2037-2045.
17. Norton JM, Alzerreca JJ, Suwa Y, Klotz MG (2002) Diversity of ammonia monooxygenase operon in autotrophic ammonia-oxidizing bacteria. Arch Microbiol 177: 139-149.
18. Okano Y, Hristova KR, Leutenegger CM, Jackson LE, Denison RF, Gebreyesus B, Lebauer D, Scow KM (2004) Application of real-time PCR to study effects of ammonia-oxidizing bacteria in soil. Appl Environ Microbiol 70: 1008-1016.
19. Rotthauwe JH, Witzel KP, Liesack W (1997) The ammonia monooxygenase structural gene amoA as a functional marker: molecular fine-scale analysis of natural ammonia-oxidizing populations. Appl Environ Microbiol 63: 4704-4712.
20. Schimel JP, Bennett J (2004) Nitrogen mineralization: challenges of a changing paradigm. Ecology 85: 591-602.
21. 2 evolution in saline soils affected by an osmotic effect and calcium carbonate? Biol Ferti Soils 46: 781-792.
22. Smart DR, Stark JM, Diego V (1999) Resource limitations to nitric oxide emissions from a sagebrush steppe ecosystem. Biogeochemistry 47: 63-86.
23. 2O from Scottish agricultural soils as a function of fertilizer N. Nutr Cycl Agroecosys 52: 123-130.
24. Stark JM (2000) Nutrient transformations. In: Sala OE, Jackson RB, Mooney HA, Howarth RW (eds) Methods in ecosystem science. Springer, New York, pp 215-234.
25. Yao HY, Bowman D, Shi W (2006) Soil microbial community structure and diversity in a turfgrass chronosequence: land-use change versus turfgrass management. Appl Soil Ecol 34: 209-218.
26. Zak JC, Willig MR, Moorhead DL, Wildman HG (1994) Functional diversity of microbial communities: a quantitative approach. Soil Biol Biochem 26: 1101-1108.
27. Zelles L (1997) Phospholipid fatty acid profiles in selected members of soil microbial communities. Chemosphere 35: 275-294.
28. Zhang JB, Cai ZC, Cheng Y, Zhu TB (2009) Denitrification and total nitrogen gas production from forest soils of Eastern China. Soil Biol Biochem 41: 2551-2557.
29. Zogg GP, Zak DR, Ringelberg DB, MacDonald NW, Pregitzer KS, White DC (1997) Compositional and functional shifts in microbial communities due to soil warming. Soil Sci Soc Am J 61: 475-481.