Identification and characterization of a new xylanase from Gram-positive bacteria isolated from termite gut (Reticulitermes santonensis)

Protein Expression and Purification

Volumn 83, Issue 2, 2012, Pages 117-127

  Mattéotti, Christel ^a   Bauwens, Julien ^a   Brasseur, Catherine ^a   Tarayre, Cédric ^a   Thonart, Philippe ^a   Destain, Jacqueline ^a   Francis, Frédéric ^a   Haubruge, Eric ^a   De Pauw, Edwin ^a   Portetelle, Daniel ^a   Vandenbol, Micheline ^a  

^a UNIVERSITY OF LIÈGE   (Belgium)

Author keywords

Acetyl xylan esterase; Enzyme; Gram positive bacteria; Termite; Xylanase

Indexed keywords

BACTERIAL PROTEIN; ENDO 1,4 BETA XYLANASE; GLYCOSIDASE; XYLAN;

ACTINOBACTERIA; AFFINITY CHROMATOGRAPHY; AMINO ACID SEQUENCE; ANIMAL; ARTICLE; CHEMISTRY; DNA SEQUENCE; ENZYME STABILITY; ENZYMOLOGY; GASTROINTESTINAL TRACT; ISOLATION AND PURIFICATION; ISOPTERA; METABOLISM; MICROBIOLOGY; MOLECULAR CLONING; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; PH; PHYLOGENY;

ACTINOBACTERIA; AMINO ACID SEQUENCE; ANIMALS; BACTERIAL PROTEINS; BASE SEQUENCE; CHROMATOGRAPHY, AFFINITY; CLONING, MOLECULAR; ENDO-1,4-BETA XYLANASES; ENZYME STABILITY; GASTROINTESTINAL TRACT; GLYCOSIDE HYDROLASES; HYDROGEN-ION CONCENTRATION; ISOPTERA; MOLECULAR SEQUENCE DATA; PHYLOGENY; SEQUENCE ANALYSIS, DNA; XYLANS;

ACTINOBACTERIA; BACTERIA (MICROORGANISMS); ESCHERICHIA COLI; ISOPTERA; POSIBACTERIA; PROKARYOTA; RETICULITERMES SANTONENSIS;

EID: 84859726707     PISSN: 10465928     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.pep.2012.03.009     Document Type: Article

References (46)

1. T. Abe, D.E. Bignell, and M. Higashi Termites: Evolution, Sociality, Symbioses, Ecology 2000 Kluwer Academic Publishers Dordrecht
2. P. Jayasimha, and G. Henderson Fungi Isolated from integument and guts of coptotermes formosanus and their antagonistic effect on Gleophyllum trabeum Ann. Entomol. Soc. Am. 100 2007 703 710
3. A. Schäfer, R. Konrad, T. Kuhnigk, P. Kampfer, H. Hertel, and H. Konig Hemicellulose-degrading bacteria and yeasts from the termite gut J. Appl. Bacteriol. 80 1996 471 478
4. M.A. Yamin Flagellates of the orders Trichomonadida Kirby, Oxymonadida Grasse, and Hypermastigida Grassi & Foa reported from lower termites (Isoptera families Mastotermitidae, Kalotermitidae, Hodotermitidae, Termopsidae, Rhinotermitidae, and Serritermitidae) and from the wood-feeding roach Cyptocerus (Dictyoptera: Cryptocercidae) Sociobiology 4 1979 3 119
5. H. Yang, D. Schmitt-Wagner, U. Stingl, and A. Brune Niche heterogeneity determines bacterial community structure in the termite gut (Reticulitermes santonensis) Environ. Microbiol. 7 2005 916 932
6. H. Nakajima, Y. Hongoh, R. Usami, T. Kudo, and M. Ohkuma Spatial distribution of bacterial phylotypes in the gut of the termite Reticulitermes speratus and the bacterial community colonizing the gut epithelium FEMS Microbiol. Ecol. 54 2005 247 255
7. M. Fisher, D. Miller, C. Brewster, C. Husseneder, and A. Dickerman Diversity of gut bacteria of Reticulitermes flavipes as examined by 16S rRNA gene sequencing and amplified rDNA restriction analysis Curr. Microbiol. 55 2007 254 259
8. P. Hugenholtz, B.M. Goebel, and N.R. Pace Impact of culture-independent studies on the emerging phylogenetic view of bacterial diversity J. Bacteriol. 180 1998 4765 4774
9. W. Ikeda-Ohtsubo, M. Desai, U. Stingl, and A. Brune Phylogenetic diversity of 'Endomicrobia' and their specific affiliation with termite gut flagellates Microbiology 153 2007 3458 3465
10. J.R. Leadbetter, L.D. Crosby, and J.A. Breznak Methanobrevibacter filiformis sp. nov., a filamentous methanogen from termite hindguts Arch. Microbiol. 169 1998 287 292
11. J.A. Breznak, and A. Brune Role of microorganisms in the digestion of lignocellulose by termites Annu. Rev. Entomol. 39 1994 453 487
12. T. Inoue, A. Sugimoto, J. Azuma, K. Murashima, and M. Slaytor Cellulose and xylan utilisation in the lower termite Reticulitermes speratus J. Insect Physiol. 43 1997 235 242
13. X. Zhou, J.A. Smith, F.M. Oi, P.G. Koehler, G.W. Bennett, and M.E. Scharf Correlation of cellulase gene expression and cellulolytic activity throughout the gut of the termite Reticulitermes flavipes Gene 395 2007 29 39
14. D. Zhang, A.R. Lax, A.K. Raina, and J.M. Bland Differential cellulolytic activity of native-form and C-terminal tagged-form cellulase derived from Coptotermes formosanus and expressed in E. coli Insect Biochem. Mol. Biol. 39 2009 516 522
15. M.J. Cho, Y.H. Kim, K. Shin, Y.K. Kim, Y.S. Kim, and T.J. Kim Symbiotic adaptation of bacteria in the gut of Reticulitermes speratus: low endo-beta-1,4-glucanase activity Biochem. Biophys. Res. Commun. 395 2010 432 435
16. A. Tartar, M.M. Wheeler, X. Zhou, M.R. Coy, D.G. Boucias, and M.E. Scharf Parallel metatranscriptome analyses of host and symbiont gene expression in the gut of the termite Reticulitermes flavipes Biotechnol. Biofuels. 2 2009 25
17. D. Zhang, A.R. Lax, J.M. Bland, and A.B. Allen Characterization of a new endogenous endo-beta-1,4-glucanase of Formosan subterranean termite (Coptotermes formosanus) Insect Biochem. Mol. Biol. 41 2011 211 218
18. N. Todaka, S. Moriya, K. Saita, T. Hondo, I. Kiuchi, H. Takasu, M. Ohkuma, C. Piero, Y. Hayashizaki, and T. Kudo Environmental cDNA analysis of the genes involved in lignocellulose digestion in the symbiotic protist community of Reticulitermes speratus FEMS Microbiol. Ecol. 59 2007 592 599
19. F. Warnecke, P. Luginbuhl, N. Ivanova, M. Ghassemian, T.H. Richardson, J.T. Stege, M. Cayouette, A.C. McHardy, G. Djordjevic, N. Aboushadi, R. Sorek, S.G. Tringe, M. Podar, H.G. Martin, V. Kunin, D. Dalevi, J. Madejska, E. Kirton, D. Platt, E. Szeto, A. Salamov, K. Barry, N. Mikhailova, N.C. Kyrpides, E.G. Matson, E.A. Ottesen, X. Zhang, M. Hernandez, C. Murillo, L.G. Acosta, I. Rigoutsos, G. Tamayo, B.D. Green, C. Chang, E.M. Rubin, E.J. Mathur, D.E. Robertson, P. Hugenholtz, and J.R. Leadbetter Metagenomic and functional analysis of hindgut microbiota of a wood-feeding higher termite Nature 450 2007 560 565
20. S. Dröge, J. Frohlich, R. Radek, and H. Konig Spirochaeta coccoides sp. nov., a novel coccoid spirochete from the hindgut of the termite Neotermes castaneus Appl. Environ. Microbiol. 72 2006 392 397
21. C. Matteotti, E. Haubruge, P. Thonart, F. Francis, E. De Pauw, D. Portetelle, and M. Vandenbol Characterization of a new beta-glucosidase/beta- xylosidase from the gut microbiota of the termite (Reticulitermes santonensis) FEMS Microbiol. Lett. 314 2011 147 157
22. C. Matteotti, P. Thonart, F. Francis, E. Haubruge, J. Destain, C. Brasseur, J. Bauwens, E. De Pauw, D. Portetelle, and M. Vandenbol New glucosidase activities identified by functional screening of a genomic DNA library from the gut microbiota of the termite Reticulitermes santonensis Microbiol. Res. 166 2011 629 642
23. K. Tamura, D. Peterson, N. Peterson, G. Stecher, M. Nei, and S. Kumar MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods Mol. Biol. Evol. 28 2011 2731 2739
24. R. Westermeier Sensitive, quantitative, and fast modifications for Coomassie blue staining of polyacrylamide gels Proteomics 6 Suppl 2 2006 61 64
25. S.M. Geib, M. Tien, and K. Hoover Identification of proteins involved in lignocellulose degradation using in gel zymogram analysis combined with mass spectroscopy-based peptide analysis of gut proteins from larval Asian longhorned beetles Anoplophora glabripennis Insect Sci. 17 2010 253 264
26. D. Kafetzopoulos, G. Thireos, J.N. Vournakis, and V. Bouriotis The primary structure of a fungal chitin deacetylase reveals the function for two bacterial gene products Proc. Natl. Acad. Sci. USA 90 1993 8005 8008
27. F. Shareck, P. Biely, R. Morosoli, and D. Kluepfel Analysis of DNA flanking the xlnB locus of Streptomyces lividans reveals genes encoding acetyl xylan esterase and the RNA component of ribonuclease P Gene 153 1995 105 109
28. J.I. Laurie, J.H. Clarke, A. Circuela, C.B. Faulds, G. Williamson, H.J. Gilbert, J.E. Rixon, J. Millward-Sadler, and G.P. Hazelwood The NodB domain of a multidomain xylanase from Cellulomonas fimi deacetylates acetylxylan FEMS Microbiol. Lett. 148 1997 261 264
29. P.M. Coutinho, and B. Henrissat Carbohydrate active enzyme: an integrated database approach H.J. Gilbert, G. Davies, B. Henrissat, B. Svensson, Recent Advances in Carbohydrate Bioengineering 1999 The Royal Society of Chemistry Cambridge 3 12
30. F. Shareck, C. Roy, M. Yaguchi, R. Morosoli, and D. Kluepfel Sequences of three genes specifying xylanases in Streptomyces lividans Gene 107 1991 75 82
31. B. Henrissat, and A. Bairoch New families in the classification of glycosyl hydrolases based on amino acid sequence similarities Biochem. J. 293 Pt 3 1993 781 788
32. D. Kluepfel, N. Daigneault, R. Morosoli, and F. Shareck Purification and characterization of a new xylanase (xylanase C) produced by Streptomyces lividans 66 Appl. Microbiol. Biotechnol. 36 1992 626 631
33. D. Kluepfel, S. Vats-Mehta, F. Aumont, F. Shareck, and R. Morosoli Purification and characterization of a new xylanase (xylanase B) produced by Streptomyces lividans 66 Biochem. J. 267 1990 45 50
34. R. Morosoli, J.L. Bertrand, F. Mondou, F. Shareck, and D. Kluepfel Purification and properties of a xylanase from Streptomyces lividans Biochem. J. 239 1986 587 592
35. V. Puchart, M.C. Gariepy, F. Shareck, and C. Dupont Identification of catalytically important amino acid residues of Streptomyces lividans acetylxylan esterase A from carbohydrate esterase family 4 Biochim. Biophys. Acta 1764 2006 263 274
36. A. Jalal, N. Rashid, N. Ahmed, S. Iftikhar, and M. Akhtar Escherichia coli signal peptidase recognizes and cleaves the signal sequence of xylanase from a newly isolated Bacillus subtilis strain R5 Biochemistry (Mosc) 76 2011 347 349
37. M. Paetzel, A. Karla, N.C. Strynadka, and R.E. Dalbey Signal peptidases Chem. Rev. 102 2002 4549 4580
38. P. Li, J. Beckwith, and H. Inouye Alteration of the amino terminus of the mature sequence of a periplasmic protein can severely affect protein export in Escherichia coli Proc. Natl. Acad. Sci. USA 85 1988 7685 7689
39. S. MacIntyre, M.L. Eschbach, and B. Mutschler Export incompatibility of N-terminal basic residues in a mature polypeptide of Escherichia coli can be alleviated by optimising the signal peptide Mol. Gen. Genet. 221 1990 466 474
40. B.A. Rasmussen, and T.J. Silhavy The first 28 amino acids of mature LamB are required for rapid and efficient export from the cytoplasm Genes Dev. 1 1987 185 196
41. U. Brockmeier, M. Caspers, R. Freudl, A. Jockwer, T. Noll, and T. Eggert Systematic screening of all signal peptides from Bacillus subtilis: a powerful strategy in optimizing heterologous protein secretion in Gram-positive bacteria J. Mol. Biol. 362 2006 393 402
42. J.S. Van Dyk, M. Sakka, K. Sakka, and B.I. Pletschke Identification of endoglucanases, xylanases, pectinases and mannanases in the multi-enzyme complex of Bacillus licheniformis SVD1 Enzyme Microb. Technol. 47 2010 112 118
43. K. Ratanakhanokchai, K.L. Kyu, and M. Tanticharoen Purification and properties of a xylan-binding endoxylanase from Alkaliphilic bacillus sp. strain K-1 Appl. Environ. Microbiol. 65 1999 694 697
44. S. Kaneko, A. Kuno, M. Muramatsu, S. Iwamatsu, I. Kusakabe, and K. Hayashi Purification and characterization of a family G/11 beta-xylanase from Streptomyces olivaceoviridis E-86 Biosci. Biotechnol. Biochem. 64 2000 447 451
45. T. Collins, C. Gerday, and G. Feller Xylanases, xylanase families and extremophilic xylanases FEMS Microbiol. Rev. 29 2005 3 23
46. Q.K. Beg, M. Kapoor, L. Mahajan, and G.S. Hoondal Microbial xylanases and their industrial applications: a review Appl. Microbiol. Biotechnol. 56 2001 326 338