-
1
-
-
0242318322
-
Mixed-model reanalysis of primate data suggests tissue and species biases in oligonucleotide-based gene expression profiles
-
1462792, 14573485
-
Hsieh WP, Chu TM, Wolfinger RD, Gibson G. Mixed-model reanalysis of primate data suggests tissue and species biases in oligonucleotide-based gene expression profiles. Genetics 2003, 165(2):747-757. 1462792, 14573485.
-
(2003)
Genetics
, vol.165
, Issue.2
, pp. 747-757
-
-
Hsieh, W.P.1
Chu, T.M.2
Wolfinger, R.D.3
Gibson, G.4
-
2
-
-
38649137338
-
Sequence Polymorphisms Cause Many False cis eQTLs
-
10.1371/journal.pone.0000622, 1906859, 17637838
-
Alberts R, Terpstra P, Li Y, Breitling R, Nap J-P, Jansen RC. Sequence Polymorphisms Cause Many False cis eQTLs. PLoS One 2007, 2(7):e622. 10.1371/journal.pone.0000622, 1906859, 17637838.
-
(2007)
PLoS One
, vol.2
, Issue.7
-
-
Alberts, R.1
Terpstra, P.2
Li, Y.3
Breitling, R.4
Nap, J.-P.5
Jansen, R.C.6
-
3
-
-
67349259612
-
Single nucleotide polymorphisms affect both cis- and trans-eQTLs
-
10.1016/j.ygeno.2009.01.011, 19248827
-
Chen L, Page GP, Mehta T, Feng R, Cui X. Single nucleotide polymorphisms affect both cis- and trans-eQTLs. Genomics 2009, 93(6):501-508. 10.1016/j.ygeno.2009.01.011, 19248827.
-
(2009)
Genomics
, vol.93
, Issue.6
, pp. 501-508
-
-
Chen, L.1
Page, G.P.2
Mehta, T.3
Feng, R.4
Cui, X.5
-
4
-
-
74249094927
-
Detection, validation, and downstream analysis of allelic variation in gene expression
-
10.1534/genetics.109.107474, 2802080, 19884314
-
Ciobanu DC, Lu L, Mozhui K, Wang X, Jagalur M, Morris JA, Taylor WL, Dietz K, Simon P, Williams RW. Detection, validation, and downstream analysis of allelic variation in gene expression. Genetics 2010, 184(1):119-128. 10.1534/genetics.109.107474, 2802080, 19884314.
-
(2010)
Genetics
, vol.184
, Issue.1
, pp. 119-128
-
-
Ciobanu, D.C.1
Lu, L.2
Mozhui, K.3
Wang, X.4
Jagalur, M.5
Morris, J.A.6
Taylor, W.L.7
Dietz, K.8
Simon, P.9
Williams, R.W.10
-
5
-
-
70350689944
-
The effects of probe binding affinity differences on gene expression measurements and how to deal with them
-
10.1093/bioinformatics/btp492, 19689957
-
Dannemann M, Lorenc A, Hellmann I, Khaitovich P, Lachmann M. The effects of probe binding affinity differences on gene expression measurements and how to deal with them. Bioinformatics 2009, 25(21):2772-2779. 10.1093/bioinformatics/btp492, 19689957.
-
(2009)
Bioinformatics
, vol.25
, Issue.21
, pp. 2772-2779
-
-
Dannemann, M.1
Lorenc, A.2
Hellmann, I.3
Khaitovich, P.4
Lachmann, M.5
-
6
-
-
27544454498
-
Detecting single-feature polymorphisms using oligonucleotide arrays and robustified projection pursuit
-
10.1093/bioinformatics/bti640, 16118260
-
Cui X, Xu J, Asghar R, Condamine P, Svensson JT, Wanamaker S, Stein N, Roose M, Close TJ. Detecting single-feature polymorphisms using oligonucleotide arrays and robustified projection pursuit. Bioinformatics 2005, 21(20):3852-3858. 10.1093/bioinformatics/bti640, 16118260.
-
(2005)
Bioinformatics
, vol.21
, Issue.20
, pp. 3852-3858
-
-
Cui, X.1
Xu, J.2
Asghar, R.3
Condamine, P.4
Svensson, J.T.5
Wanamaker, S.6
Stein, N.7
Roose, M.8
Close, T.J.9
-
7
-
-
14644432534
-
Simultaneous genotyping, gene-expression measurement, and detection of allele-specific expression with oligonucleotide arrays
-
10.1101/gr.2850605, 546530, 15687292
-
Ronald J, Akey JM, Whittle J, Smith EN, Yvert G, Kruglyak L. Simultaneous genotyping, gene-expression measurement, and detection of allele-specific expression with oligonucleotide arrays. Genome Res 2005, 15(2):284-291. 10.1101/gr.2850605, 546530, 15687292.
-
(2005)
Genome Res
, vol.15
, Issue.2
, pp. 284-291
-
-
Ronald, J.1
Akey, J.M.2
Whittle, J.3
Smith, E.N.4
Yvert, G.5
Kruglyak, L.6
-
8
-
-
34548305236
-
AffyMAPSDetector: a software tool to characterize Affymetrix GeneChip expression arrays with respect to SNPs
-
Kumari S, Verma LK, Weller JW. AffyMAPSDetector: a software tool to characterize Affymetrix GeneChip expression arrays with respect to SNPs. BMC Bioinforma 2007, 8:276.
-
(2007)
BMC Bioinforma
, vol.8
, pp. 276
-
-
Kumari, S.1
Verma, L.K.2
Weller, J.W.3
-
9
-
-
58849162410
-
SNPinProbe_1.0: a database for filtering out probes in the Affymetrix GeneChip human exon 1.0 ST array potentially affected by SNPs
-
10.6026/97320630002469, 2561168, 18841244
-
Duan S, Zhang W, Bleibel WK, Cox NJ, Dolan ME. SNPinProbe_1.0: a database for filtering out probes in the Affymetrix GeneChip human exon 1.0 ST array potentially affected by SNPs. Bioinformation 2008, 2(10):469-470. 10.6026/97320630002469, 2561168, 18841244.
-
(2008)
Bioinformation
, vol.2
, Issue.10
, pp. 469-470
-
-
Duan, S.1
Zhang, W.2
Bleibel, W.K.3
Cox, N.J.4
Dolan, M.E.5
-
10
-
-
63349085347
-
Development and evaluation of new mask protocols for gene expression profiling in humans and chimpanzees
-
Toleno DM, Renaud G, Wolfsberg TG, Islam M, Wildman DE, Siegmund KD, Hacia JG. Development and evaluation of new mask protocols for gene expression profiling in humans and chimpanzees. BMC Bioinforma 2009, 10:77.
-
(2009)
BMC Bioinforma
, vol.10
, pp. 77
-
-
Toleno, D.M.1
Renaud, G.2
Wolfsberg, T.G.3
Islam, M.4
Wildman, D.E.5
Siegmund, K.D.6
Hacia, J.G.7
-
11
-
-
32544447694
-
A statistical multiprobe model for analyzing cis and trans genes in genetical genomics experiments with short-oligonucleotide arrays
-
10.1534/genetics.105.045930, 1456841, 16079228
-
Alberts R, Terpstra P, Bystrykh LV, De Haan G, Jansen RC. A statistical multiprobe model for analyzing cis and trans genes in genetical genomics experiments with short-oligonucleotide arrays. Genetics 2005, 171(3):1437-1439. 10.1534/genetics.105.045930, 1456841, 16079228.
-
(2005)
Genetics
, vol.171
, Issue.3
, pp. 1437-1439
-
-
Alberts, R.1
Terpstra, P.2
Bystrykh, L.V.3
De Haan, G.4
Jansen, R.C.5
-
12
-
-
4444287699
-
Regional patterns of gene expression in human and chimpanzee brains
-
10.1101/gr.2538704, 509255, 15289471
-
Khaitovich P, Muetzel B, She X, Lachmann M, Hellmann I, Dietzsch J, Steigele S, Do HH, Weiss G, Enard W, et al. Regional patterns of gene expression in human and chimpanzee brains. Genome Res 2004, 14(8):1462-1473. 10.1101/gr.2538704, 509255, 15289471.
-
(2004)
Genome Res
, vol.14
, Issue.8
, pp. 1462-1473
-
-
Khaitovich, P.1
Muetzel, B.2
She, X.3
Lachmann, M.4
Hellmann, I.5
Dietzsch, J.6
Steigele, S.7
Do, H.H.8
Weiss, G.9
Enard, W.10
-
13
-
-
63549122013
-
Robust detection and genotyping of single feature polymorphisms from gene expression data
-
10.1371/journal.pcbi.1000317, 2649212, 19282978
-
Wang M, Hu X, Li G, Leach LJ, Potokina E, Druka A, Waugh R, Kearsey MJ, Luo Z. Robust detection and genotyping of single feature polymorphisms from gene expression data. PLoS Comput Biol 2009, 5(3):e1000317. 10.1371/journal.pcbi.1000317, 2649212, 19282978.
-
(2009)
PLoS Comput Biol
, vol.5
, Issue.3
-
-
Wang, M.1
Hu, X.2
Li, G.3
Leach, L.J.4
Potokina, E.5
Druka, A.6
Waugh, R.7
Kearsey, M.J.8
Luo, Z.9
-
14
-
-
79953034289
-
Evaluating gene expression in C57BL/6J and DBA/2J mouse striatum using RNA-Seq and microarrays
-
Bottomly D, Walter NA, Hunter JE, Darakjian P, Kawane S, Buck KJ, Searles RP, Mooney M, McWeeney SK, Hitzemann R. Evaluating gene expression in C57BL/6J and DBA/2J mouse striatum using RNA-Seq and microarrays. PLoS One 6(3):e17820.
-
PLoS One
, vol.6
, Issue.3
-
-
Bottomly, D.1
Walter, N.A.2
Hunter, J.E.3
Darakjian, P.4
Kawane, S.5
Buck, K.J.6
Searles, R.P.7
Mooney, M.8
McWeeney, S.K.9
Hitzemann, R.10
-
15
-
-
67650550763
-
SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
-
Fujisawa H, Horiuchi Y, Harushima Y, Takada T, Eguchi S, Mochizuki T, Sakaguchi T, Shiroishi T, Kurata N. SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip. BMC Bioinforma 2009, 10:131.
-
(2009)
BMC Bioinforma
, vol.10
, pp. 131
-
-
Fujisawa, H.1
Horiuchi, Y.2
Harushima, Y.3
Takada, T.4
Eguchi, S.5
Mochizuki, T.6
Sakaguchi, T.7
Shiroishi, T.8
Kurata, N.9
-
16
-
-
0035923521
-
Classification of human lung carcinomas by mRNA expression profiling reveals distinct adenocarcinoma subclasses
-
10.1073/pnas.191502998, 61120, 11707567
-
Bhattacharjee A, Richards WG, Staunton J, Li C, Monti S, Vasa P, Ladd C, Beheshti J, Bueno R, Gillette M, et al. Classification of human lung carcinomas by mRNA expression profiling reveals distinct adenocarcinoma subclasses. Proc Natl Acad Sci U S A 2001, 98(24):13790-13795. 10.1073/pnas.191502998, 61120, 11707567.
-
(2001)
Proc Natl Acad Sci U S A
, vol.98
, Issue.24
, pp. 13790-13795
-
-
Bhattacharjee, A.1
Richards, W.G.2
Staunton, J.3
Li, C.4
Monti, S.5
Vasa, P.6
Ladd, C.7
Beheshti, J.8
Bueno, R.9
Gillette, M.10
-
17
-
-
55849095488
-
Single feature polymorphism discovery in rice
-
10.1371/journal.pone.0000284, 1808426, 17372626
-
Kumar R, Qiu J, Joshi T, Valliyodan B, Xu D, Nguyen HT. Single feature polymorphism discovery in rice. PLoS One 2007, 2(3):e284. 10.1371/journal.pone.0000284, 1808426, 17372626.
-
(2007)
PLoS One
, vol.2
, Issue.3
-
-
Kumar, R.1
Qiu, J.2
Joshi, T.3
Valliyodan, B.4
Xu, D.5
Nguyen, H.T.6
-
18
-
-
34247126574
-
Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
-
10.1186/1471-2164-8-87, 1851953, 17394671
-
Walia H, Wilson C, Condamine P, Ismail AM, Xu J, Cui X, Close TJ. Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise. BMC Genomics 2007, 8:87. 10.1186/1471-2164-8-87, 1851953, 17394671.
-
(2007)
BMC Genomics
, vol.8
, pp. 87
-
-
Walia, H.1
Wilson, C.2
Condamine, P.3
Ismail, A.M.4
Xu, J.5
Cui, X.6
Close, T.J.7
-
19
-
-
46649106097
-
Identification of SNPs and INDELS in swine transcribed sequences using short oligonucleotide microarrays
-
10.1186/1471-2164-9-252, 2442091, 18510738
-
Bischoff SR, Tsai S, Hardison NE, York AM, Freking BA, Nonneman D, Rohrer G, Piedrahita JA. Identification of SNPs and INDELS in swine transcribed sequences using short oligonucleotide microarrays. BMC Genomics 2008, 9:252. 10.1186/1471-2164-9-252, 2442091, 18510738.
-
(2008)
BMC Genomics
, vol.9
, pp. 252
-
-
Bischoff, S.R.1
Tsai, S.2
Hardison, N.E.3
York, A.M.4
Freking, B.A.5
Nonneman, D.6
Rohrer, G.7
Piedrahita, J.A.8
-
20
-
-
41149103105
-
Detection and validation of single feature polymorphisms in cowpea (Vigna unguiculata L. Walp) using a soybean genome array
-
10.1186/1471-2164-9-107, 2270837, 18307807
-
Das S, Bhat PR, Sudhakar C, Ehlers JD, Wanamaker S, Roberts PA, Cui X, Close TJ. Detection and validation of single feature polymorphisms in cowpea (Vigna unguiculata L. Walp) using a soybean genome array. BMC Genomics 2008, 9:107. 10.1186/1471-2164-9-107, 2270837, 18307807.
-
(2008)
BMC Genomics
, vol.9
, pp. 107
-
-
Das, S.1
Bhat, P.R.2
Sudhakar, C.3
Ehlers, J.D.4
Wanamaker, S.5
Roberts, P.A.6
Cui, X.7
Close, T.J.8
-
21
-
-
67649388186
-
Discovery and mapping of single feature polymorphisms in wheat using Affymetrix arrays
-
10.1186/1471-2164-10-251, 2698007, 19480702
-
Bernardo AN, Bradbury PJ, Ma H, Hu S, Bowden RL, Buckler ES, Bai G. Discovery and mapping of single feature polymorphisms in wheat using Affymetrix arrays. BMC Genomics 2009, 10:251. 10.1186/1471-2164-10-251, 2698007, 19480702.
-
(2009)
BMC Genomics
, vol.10
, pp. 251
-
-
Bernardo, A.N.1
Bradbury, P.J.2
Ma, H.3
Hu, S.4
Bowden, R.L.5
Buckler, E.S.6
Bai, G.7
|