메뉴 건너뛰기




Volumn 8, Issue , 2007, Pages

AffyMAPSDetector: A software tool to characterize Affymetrix GeneChip™ expression arrays with respect to SNPs

Author keywords

[No Author keywords available]

Indexed keywords

AFFYMETRIX GENECHIP; CLASSIFICATION RESULTS; CROSS-HYBRIDIZATION; EXPRESSION MEASUREMENTS; GENE EXPRESSION LEVELS; INTENSITY DISTRIBUTION; PROBE MEASUREMENTS; SINGLE NUCLEOTIDE POLYMORPHISMS;

EID: 34548305236     PISSN: None     EISSN: 14712105     Source Type: Journal    
DOI: 10.1186/1471-2105-8-276     Document Type: Article
Times cited : (15)

References (22)
  • 3
    • 26444454986 scopus 로고    scopus 로고
    • A sequence-based identification of the genes detected by probesets on the Affymetrix U133 plus2.0 array
    • 549426 15722477
    • Harbig J Sprinkle R Enkemann SA A sequence-based identification of the genes detected by probesets on the Affymetrix U133 plus2.0 array NAR 2005 33 3 e31 549426 15722477
    • (2005) NAR , vol.33 , Issue.3
    • Harbig, J.1    Sprinkle, R.2    Enkemann, S.A.3
  • 4
    • 0035793042 scopus 로고    scopus 로고
    • Model-based analysis of oligonucleotide arrays: Expression index computation and outlier detection
    • 14539 11134512
    • Li C Wong WH Model-based analysis of oligonucleotide arrays: Expression index computation and outlier detection Proc Natl Acad Sci USA 2001 98 1 31-36 14539 11134512
    • (2001) Proc Natl Acad Sci USA , vol.98 , Issue.1 , pp. 31-36
    • Li, C.1    Wong, W.H.2
  • 5
    • 0043192901 scopus 로고    scopus 로고
    • A gene expression-based method to diagnose clinically distinct subgroups of diffuse large B cell lymphoma
    • 187912 12900505
    • Wright G Tan B Rosenwald A Hurt EH Wiestner A Staudt LM A gene expression-based method to diagnose clinically distinct subgroups of diffuse large B cell lymphoma Proc Natl Acad Sci USA 2003 100 17 9991-9996 187912 12900505
    • (2003) Proc Natl Acad Sci USA , vol.100 , Issue.17 , pp. 9991-9996
    • Wright, G.1    Tan, B.2    Rosenwald, A.3    Hurt, E.H.4    Wiestner, A.5    Staudt, L.M.6
  • 6
    • 27744579507 scopus 로고    scopus 로고
    • An expression index for Affymetrix GeneChips based on the generalized logarithm
    • 16159924
    • Zhou L Rocke DM An expression index for Affymetrix GeneChips based on the generalized logarithm Bioinformatics 2005 21 21 3983-3989 16159924
    • (2005) Bioinformatics , vol.21 , Issue.21 , pp. 3983-3989
    • Zhou, L.1    Rocke, D.M.2
  • 7
    • 25144496293 scopus 로고    scopus 로고
    • Affymetrix: New statistical algorithms for monitoring gene expression on GeneChip® probe arrays
    • Santa Clara: Affymetrix Technical Notes
    • Affymetrix: New statistical algorithms for monitoring gene expression on GeneChip® probe arrays Technical Notes Santa Clara: Affymetrix 2001
    • (2001)
  • 10
    • 33746979689 scopus 로고    scopus 로고
    • High throughput single nucleotide polymorphism genotyping technology
    • Lemieux B High throughput single nucleotide polymorphism genotyping technology Current Genomics 2000 1 4 301-311
    • (2000) Current Genomics , vol.1 , Issue.4 , pp. 301-311
    • Lemieux, B.1
  • 11
    • 3142674789 scopus 로고    scopus 로고
    • A method for cross-species gene expression analysis with high-density oligonucleotide arrays
    • 373262 14704347
    • Ji W Zhou W Gregg K Yu N Davis S Davis S A method for cross-species gene expression analysis with high-density oligonucleotide arrays Nucleic Acids Res 2004 32 11 93 373262 14704347
    • (2004) Nucleic Acids Res , vol.32 , Issue.11 , pp. 93
    • Ji, W.1    Zhou, W.2    Gregg, K.3    Yu, N.4    Davis, S.5    Davis, S.6
  • 12
    • 0012789869 scopus 로고    scopus 로고
    • Allelic variation in gene expression is common in the human genome
    • 403776 403776 12902379
    • Lo HS Wang Z Hu Y Yang HH Gere S Buetow KH Lee MP Allelic variation in gene expression is common in the human genome Genome Res 2003 13 1855-1862 403776 12902379
    • (2003) Genome Res , vol.13 , pp. 1855-1862
    • Lo, H.S.1    Wang, Z.2    Hu, Y.3    Yang, H.H.4    Gere, S.5    Buetow, K.H.6    Lee, M.P.7
  • 13
    • 84886765165 scopus 로고    scopus 로고
    • The Java Virtual Machine and the Java Runtime Environment
    • The Java Virtual Machine and the Java Runtime Environment http://java.sun.com/j2se
  • 14
    • 84874657135 scopus 로고    scopus 로고
    • Affymetrix support center
    • Affymetrix support center http://www.affymetrix.com/support/technical/ byproduct.affx?product=hgu95
  • 15
    • 84874664749 scopus 로고    scopus 로고
    • NCBI SNP database
    • NCBI SNP database http://www.ncbi.nlm.nih.gov/SNP/
  • 16
    • 84874646117 scopus 로고    scopus 로고
    • NCBI nucleotide database
    • NCBI nucleotide database http://www.ncbi.nlm.nih.gov/entrez/
  • 18
    • 84874655657 scopus 로고    scopus 로고
    • Supplementary data for the human lung adenocarcinoma study
    • http://research.dfci.harvard.edu/meyersonlab/lungca/
    • Supplementary data for the human lung adenocarcinoma study http://www.broad.mit.edu/mpr/lung/ http://research.dfci.harvard.edu/ meyersonlab/lungca/
  • 19
    • 2342634096 scopus 로고    scopus 로고
    • DNA-Chip Analyzer (dChip)
    • New York: Springer Parmigiani G, Garrett ES, Irizarry R, Zeger SL
    • Li C Wong WH DNA-Chip Analyzer (dChip) The analysis of gene expression data: Methods and software New York: Springer Parmigiani G, Garrett ES, Irizarry R, Zeger SL 2003 120-141
    • (2003) The Analysis of Gene Expression Data: Methods and Software , pp. 120-141
    • Li, C.1    Wong, W.H.2
  • 20
    • 84886755223 scopus 로고    scopus 로고
    • dChip Software Development page
    • dChip Software Development page http://biosun1.harvard.edu/complab/dchip/
  • 21
    • 13844256710 scopus 로고    scopus 로고
    • Detecting false expression signals in high-density oligonucleotide arrays by an in silico approach
    • 15718097
    • Zhang J Finney RP Clifford RJ Derr LK Buetow KH Detecting false expression signals in high-density oligonucleotide arrays by an in silico approach Genomics 2005 85 297-308 15718097
    • (2005) Genomics , vol.85 , pp. 297-308
    • Zhang, J.1    Finney, R.P.2    Clifford, R.J.3    Derr, L.K.4    Buetow, K.H.5
  • 22
    • 25444438425 scopus 로고    scopus 로고
    • Inconsistencies over time in 5% of NetAffx probe-to-gene annotations
    • 1188054 16033654
    • Perez-Iratxeta C Andrade MA Inconsistencies over time in 5% of NetAffx probe-to-gene annotations BMC Bioinformatics 2005 6 183 1188054 16033654
    • (2005) BMC Bioinformatics , vol.6 , pp. 183
    • Perez-Iratxeta, C.1    Andrade, M.A.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.