The chromodomain-containing NH 2-terminus of Chromator interacts with histone H1 and is required for correct targeting to chromatin

Chromosoma

Volumn 121, Issue 2, 2012, Pages 209-220

  Yao, Changfu ^a   Ding, Yun ^a   Cai, Weili ^a   Wang, Chao ^a   Girton, Jack ^a   Johansen, Kristen M ^a   Johansen, Jørgen ^a  

^a IOWA STATE UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CHROMATOR; CHROMOSOME PROTEIN; HISTONE H1; UNCLASSIFIED DRUG;

AMINO ACID SEQUENCE; AMINO TERMINAL SEQUENCE; ANIMAL CELL; ARTICLE; CARBOXY TERMINAL SEQUENCE; CHROMATIN; CHROMOSOME STRUCTURE; CONTROLLED STUDY; DROSOPHILA MELANOGASTER; INTERPHASE; MITOSIS; MOLECULAR MECHANICS; NONHUMAN; PROTEIN DOMAIN; PROTEIN EXPRESSION; PROTEIN FUNCTION; PROTEIN INTERACTION; PROTEIN LOCALIZATION; PROTEIN TARGETING;

ANIMALS; CHROMATIN; DROSOPHILA MELANOGASTER; DROSOPHILA PROTEINS; ELECTROPHORESIS, POLYACRYLAMIDE GEL; GENETIC VECTORS; HISTONES; IMMUNOBLOTTING; IMMUNOPRECIPITATION; INTERPHASE; MODELS, MOLECULAR; NUCLEAR MATRIX-ASSOCIATED PROTEINS; PROTEIN STRUCTURE, TERTIARY;

EID: 84859701316     PISSN: 00095915     EISSN: 14320886     Source Type: Journal    
DOI: 10.1007/s00412-011-0355-4     Document Type: Article

References (38)

1. Ball LJ, Murzina NV, Broadhurst RW, Raine AR, Archer SJ, Stott FJ, Murzin AG, Singh PB, Domaille PJ, Laue ED (1997) Structure of the chromatin binding (chromo) domain from mouse modifier protein 1. EMBO J 16:2473-2481 (Pubitemid 27258644)
2. Brand AH, Perrimon N (1993) Targeted gene expression as a means of altering cell fates and generating dominant phenotypes. Development 118:401-415 (Pubitemid 23214028)
3. Brasher SV, Smith BO, Fogh RH, Nietlispach D, Thiru A, Nielsen PR, Broadhurst RW, Ball LJ, Murzina NV, Laue ED (2000) The structure of mouse HP1 suggests a unique mode of single peptide recognition by the shadow chromo domain dimer. EMBO J 19:1587-1597 (Pubitemid 30182166)
4. Brehm A, Tufteland KR, Aasland R, Becker PB (2004) The many colours of chromodomains. Bioessays 26:133-140 (Pubitemid 38197011)
5. Cai W, Jin Y, Girton J, Johansen J, Johansen KM (2010) Preparation of polytene chromosome squashes for antibody labeling. J. Vis. Exp. http://www.jove.com/index/Details.stp?ID01748
6. Cowieson NP, Partridge JF, Allshire RC, McLaughlin PJ (2000) Dimerization of a chromo shadow domain and distinctions from the chromodomain as revealed by structural analysis. Curr Biol 10:517-525 (Pubitemid 30308309)
7. Deng H, Zhang W, Bao X, Martin JN, Girton J, Johansen J, Johansen KM (2005) The JIL-1 kinase regulates the structure of Drosophila polytene chromosomes. Chromosoma 114:173-182 (Pubitemid 41349176)
8. Ding Y, Yao C, Lince-Faria M, Rath U, Cai W, Maiato H, Girton J, Johansen KM, Johansen J (2009) Chromator is required for proper microtubule spindle formation and mitosis in Drosophila. Dev Biol 334:253-263
9. Eggert H, Gortchakov A, Saumweber H (2004) Identification of the Drosophila interband-specific protein Z4 as a DNA-binding zincfinger protein determining chromosomal structure. J Cell Sci 117:4253-4264 (Pubitemid 39328312)
10. Fischle W, Wang Y, Jacobs SA, Kim Y, Allis CD (2003) Molecular basis for the discrimination of repressive methyl-lysine marks in histone H3 by Polycomb and HP1 chromodomains. Genes Dev 17:1870-1881 (Pubitemid 36944564)
11. Gan M, Moebus S, Eggert H, Saumweber H (2011) The Chriz-Z4 complex recruits JIL-1 to polytene chromosomes, a requirement for inter-band-specific phosphorylation of H3S10. J Biosci 36:425-438
12. Gortchakov AA, Eggert H, Gan M, Mattow J, Zhimulev IF, Saumweber H (2005) Chriz, a chromodomain protein specific for the interbands of Drosophila melanogaster polytene chromosomes. Chromosoma 114:54-66 (Pubitemid 40724058)
13. Hill RJ, Watt F, Wilson CM, Fifis T, Underwood PA, Tribbick G, Geysen HM, Thomas JO (1989) Bands, interbands and puffs in native Drosophila polytene chromosomes are recognized by a monoclonal antibody to an epitope in the carboxy-terminal tail of histone H1. Chromosoma 98:411-421 (Pubitemid 20060884)
14. Jacobs SA, Khorasanizadeh S (2002) Structure of HP1 chromodomain bound to a Lysine 9-methylated histone H3 tail. Science 295:2080-2083 (Pubitemid 34229471)
15. Jin Y, Wang Y, Walker DL, Dong H, Conley C, Johansen J, Johansen KM (1999) JIL-1: a novel chromosomal tandem kinase implicated in transcriptional regulation in Drosophila. Mol Cell 4:129-135 (Pubitemid 29386139)
16. Johansen KM, Forer A, Yao C, Girton J, Johansen J (2011) Do nuclear envelope and intranuclear proteins reorganize during mitosis to form an elastic, hydrogel-like spindle matrix? Chromosome Res 19:345-365
17. Jones DO, Cowell IG, Singh PB (2000) Mammalian chromodomain proteins: their role in genome organization and expression. Bioessays 22:124-137 (Pubitemid 30092079)
18. Khorasanizadeh S (2004) The nucleosome: from genomic organization to genomic regulation. Cell 116:259-272
19. Kusch T, Guelman S, Abmayr SM,Workman JL (2003) Two Drosophila Ada2 homologues function in different multiprotein complexes. Mol Cell Biol 23:3305-3319 (Pubitemid 36459242)
20. Lindsley DL, Zimm GG (1992) The genome of Drosophila melanogaster. Academic, New York
21. Mendjan S, Taipale M, Kind J, Holz H, Gebhardt P, Schelder M, Vermeulen M, Buscaino A, Duncan K, Mueller J, Wilm M, Stunnenberg HG, Saumweber H, Akhtar A (2006) Nuclear pore components are involved in the transcriptional regulation of dosage compensation in Drosophila. Mol Cell 21:811-823 (Pubitemid 43376131)
22. Nielsen AL, Oulad-Abdelghani M, Ortiz JA, Remboutsika E, Chambon P, Losson R (2001) Heterochromatin formation in mammalian cells: interaction between histones and HP1 proteins. Mol Cell 7:729-739 (Pubitemid 32436434)
23. Nowak SJ, Pai C-Y, Corces VG (2003) Protein phosphatase 2A activity affects histone H3 phosphorylation and transcription in Drosophila melanogaster. Mol Cell Biol 23:6129-6138 (Pubitemid 37013091)
24. Paro R, Hogness D (1991) The Polycomb protein shares a homologous domain with a heterochromatin associated protein of Drosophila. Proc Natl Acad Sci USA 88:263-267 (Pubitemid 21914467)
25. Qi H, Rath U, Wang D, Xu Y-Z, Ding Y, Zhang W, Blacketer M, Paddy M, Girton J, Johansen J, Johansen KM(2004) Megator, an essential coiled-coil protein localizes to the putative spindle matrix during mitosis.Mol Biol Cell 15:4854-4865 (Pubitemid 39392202)
26. Qi H, Rath U, Ding Y, Ji Y, Blacketer MJ, Girton J, Johansen J, Johansen KM (2005) EAST interacts with Megator and localizes to the putative spindle matrix during mitosis in Drosophila. J Cell Biochem 95:1284-1291 (Pubitemid 41420134)
27. Rath U, Wang D, Ding Y, Xu Y-Z, Qi H, Blacketer MJ, Girton J, Johansen J, Johansen KM (2004) Chromator, a novel and essential chromodomain protein interacts directly with the putative spindle matrix protein Skeletor. J Cell Biochem 93:1033-1047 (Pubitemid 44264156)
28. Rath U, Ding Y, Deng H, Qi H, Bao X, Zhang W, Girton J, Johansen J, Johansen KM (2006) The chromodomain protein, Chromator, interacts with JIL-1 kinase and regulates the structure of Drosophila polytene chromosomes. J Cell Sci 119:2332-2341 (Pubitemid 43960322)
29. Roberts DB (1998) In Drosophila: a practical approach. (Oxford: IRL), pp 295
30. Roy A, Kucukural A, Zhang Y (2010) I-TASSER: a unified platform for automated protein structure and function prediction. Nat Protoc 5:725-738
31. Sambrook J, Russell DW (2001) Molecular cloning: a laboratory manual. Cold Spring Harbor Laboratory, New York
32. Siriaco G, Deuring R, Chioda M, Becker PB, Tamkun JW (2009) Drosophila ISWI regulates the association of histone H1 with interphase chromosomes in vivo. Genetics 182:661-669
33. Towbin H, Staehelin T, Gordon J (1979) Electrophoretic transfer of proteins from polyacrylamide gels to nitrocellulose sheets: procedure and some applications. Proc Natl Acad Sci USA 76:4350-4354 (Pubitemid 9256559)
34. Walker DL,Wang D, Jin Y, Rath U,Wang Y, Johansen J, Johansen KM (2000) Skeletor, a novel chromosomal protein that redistributes during mitosis provides evidence for the formation of a spindle matrix. J Cell Biol 151:1401-1411 (Pubitemid 32047590)
35. Wang Y, Zhang W, Jin Y, Johansen J, Johansen KM (2001) The JIL-1 tandem kinase mediates histone H3 phosphorylation and is required for maintenance of chromatin structure in Drosophila. Cell 105:433-443 (Pubitemid 32520850)
36. Wasser M, Osman ZB, Chia W (2007) EAST and Chromator control the destruction and remodeling of muscles during Drosophila metamorphosis. Dev Biol 307:380-393 (Pubitemid 47008918)
37. Zhang Y (2007) Template-based modeling and free modeling by ITASSER in CASP7. Proteins 68:108-117
38. Zhang Y (2008) Progress and challenges in protein structure prediction. Curr Opin Struct Biol 18:342-348