-
1
-
-
0027193605
-
Coupling of poly(A) site selection and trans-splicing in Leishmania
-
J.H. LeBowitz, H.Q. Smith, L. Rusche, and S.M. Beverley Coupling of poly(A) site selection and trans-splicing in Leishmania Genes Dev 7 1993 996 1007
-
(1993)
Genes Dev
, vol.7
, pp. 996-1007
-
-
Lebowitz, J.H.1
Smith, H.Q.2
Rusche, L.3
Beverley, S.M.4
-
2
-
-
0029014312
-
Control of gene expression in trypanosomes
-
L. Vanhamme, and E. Pays Control of gene expression in trypanosomes Microbiol Rev 59 1995 223 240
-
(1995)
Microbiol Rev
, vol.59
, pp. 223-240
-
-
Vanhamme, L.1
Pays, E.2
-
3
-
-
0027498318
-
Temporal order of RNA-processing reactions in trypanosomes: Rapid trans splicing precedes polyadenylation of newly synthesized tubulin transcripts
-
E. Ullu, K.R. Matthews, and C. Tschudi Temporal order of RNA-processing reactions in trypanosomes: rapid trans splicing precedes polyadenylation of newly synthesized tubulin transcripts Mol Cell Biol 13 1993 720 725
-
(1993)
Mol Cell Biol
, vol.13
, pp. 720-725
-
-
Ullu, E.1
Matthews, K.R.2
Tschudi, C.3
-
4
-
-
22244472295
-
Comparative genomics of trypanosomatid parasitic protozoa
-
N.M. El-Sayed, P.J. Myler, G. Blandin, M. Berriman, J. Crabtree, and G. Aggarwal Comparative genomics of trypanosomatid parasitic protozoa Science 309 2005 404 409
-
(2005)
Science
, vol.309
, pp. 404-409
-
-
El-Sayed, N.M.1
Myler, P.J.2
Blandin, G.3
Berriman, M.4
Crabtree, J.5
Aggarwal, G.6
-
5
-
-
34347339518
-
Comparative genomic analysis of three Leishmania species that cause diverse human disease
-
C.S. Peacock, K. Seeger, D. Harris, L. Murphy, J.C. Ruiz, and M.A. Quail Comparative genomic analysis of three Leishmania species that cause diverse human disease Nat Genet 39 2007 839 847
-
(2007)
Nat Genet
, vol.39
, pp. 839-847
-
-
Peacock, C.S.1
Seeger, K.2
Harris, D.3
Murphy, L.4
Ruiz, J.C.5
Quail, M.A.6
-
6
-
-
3343014114
-
A survey of Leishmania braziliensis genome by shotgun sequencing
-
E.C. Laurentino, J.C. Ruiz, G. Fazelinia, P.J. Myler, W. Degrave, and M. Alves-Ferreira A survey of Leishmania braziliensis genome by shotgun sequencing Mol Biochem Parasitol 137 2004 81 86
-
(2004)
Mol Biochem Parasitol
, vol.137
, pp. 81-86
-
-
Laurentino, E.C.1
Ruiz, J.C.2
Fazelinia, G.3
Myler, P.J.4
Degrave, W.5
Alves-Ferreira, M.6
-
7
-
-
0023821768
-
Embryonic epsilon and gamma globin genes of a prosimian primate (Galago crassicaudatus). Nucleotide and amino acid sequences, developmental regulation and phylogenetic footprints
-
D.A. Tagle, B.F. Koop, M. Goodman, J.L. Slightom, D.L. Hess, and R.T. Jones Embryonic epsilon and gamma globin genes of a prosimian primate (Galago crassicaudatus). Nucleotide and amino acid sequences, developmental regulation and phylogenetic footprints J Mol Biol 203 1988 439 455
-
(1988)
J Mol Biol
, vol.203
, pp. 439-455
-
-
Tagle, D.A.1
Koop, B.F.2
Goodman, M.3
Slightom, J.L.4
Hess, D.L.5
Jones, R.T.6
-
8
-
-
0034612229
-
Identification of phylogenetic footprints in primate tumor necrosis factor-alpha promoters
-
J.Y. Leung, F.E. McKenzie, A.M. Uglialoro, P.O. Flores-Villanueva, B.C. Sorkin, and E.J. Yunis Identification of phylogenetic footprints in primate tumor necrosis factor-alpha promoters Proc Natl Acad Sci USA 97 2000 6614 6618
-
(2000)
Proc Natl Acad Sci USA
, vol.97
, pp. 6614-6618
-
-
Leung, J.Y.1
McKenzie, F.E.2
Uglialoro, A.M.3
Flores-Villanueva, P.O.4
Sorkin, B.C.5
Yunis, E.J.6
-
9
-
-
0034616398
-
Identification of a coordinate regulator of interleukins 4, 13, and 5 by cross-species sequence comparisons
-
G.G. Loots, R.M. Locksley, C.M. Blankespoor, Z.E. Wang, W. Miller, and E.M. Rubin Identification of a coordinate regulator of interleukins 4, 13, and 5 by cross-species sequence comparisons Science 288 2000 136 140
-
(2000)
Science
, vol.288
, pp. 136-140
-
-
Loots, G.G.1
Locksley, R.M.2
Blankespoor, C.M.3
Wang, Z.E.4
Miller, W.5
Rubin, E.M.6
-
11
-
-
0036107903
-
Discovery of regulatory elements by a computational method for phylogenetic footprinting
-
M. Blanchette, and M. Tompa Discovery of regulatory elements by a computational method for phylogenetic footprinting Genome Res 12 2002 739 748
-
(2002)
Genome Res
, vol.12
, pp. 739-748
-
-
Blanchette, M.1
Tompa, M.2
-
12
-
-
0041903634
-
Identification of conserved regulatory elements by comparative genome analysis
-
B. Lenhard, A. Sandelin, L. Mendoza, P. Engstrom, N. Jareborg, and W.W. Wasserman Identification of conserved regulatory elements by comparative genome analysis J Biol 2 2003 13
-
(2003)
J Biol
, vol.2
, pp. 13
-
-
Lenhard, B.1
Sandelin, A.2
Mendoza, L.3
Engstrom, P.4
Jareborg, N.5
Wasserman, W.W.6
-
13
-
-
0036105591
-
RVista for comparative sequence-based discovery of functional transcription factor binding sites
-
G.G. Loots, I. Ovcharenko, L. Pachter, I. Dubchak, and E.M. Rubin rVista for comparative sequence-based discovery of functional transcription factor binding sites Genome Res 12 2002 832 839
-
(2002)
Genome Res
, vol.12
, pp. 832-839
-
-
Loots, G.G.1
Ovcharenko, I.2
Pachter, L.3
Dubchak, I.4
Rubin, E.M.5
-
14
-
-
0025183708
-
Basic local alignment search tool
-
S.F. Altschul, W. Gish, W. Miller, E.W. Myers, and D.J. Lipman Basic local alignment search tool J Mol Biol 215 1990 403 410
-
(1990)
J Mol Biol
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
15
-
-
0028276887
-
A workbench for large-scale sequence homology analysis
-
E.L. Sonnhammer, and R. Durbin A workbench for large-scale sequence homology analysis Comput Appl Biosci 10 1994 301 307
-
(1994)
Comput Appl Biosci
, vol.10
, pp. 301-307
-
-
Sonnhammer, E.L.1
Durbin, R.2
-
17
-
-
42549133162
-
Improving the prediction of mRNA extremities in the parasitic protozoan Leishmania
-
M. Smith, M. Blanchette, and B. Papadopoulou Improving the prediction of mRNA extremities in the parasitic protozoan Leishmania BMC Bioinformatics 9 2008 158
-
(2008)
BMC Bioinformatics
, vol.9
, pp. 158
-
-
Smith, M.1
Blanchette, M.2
Papadopoulou, B.3
-
18
-
-
33847264343
-
Enrichment or depletion of a GO category within a class of genes: Which test?
-
I. Rivals, L. Personnaz, L. Taing, and M.C. Potier Enrichment or depletion of a GO category within a class of genes: which test? Bioinformatics 23 2007 401 407
-
(2007)
Bioinformatics
, vol.23
, pp. 401-407
-
-
Rivals, I.1
Personnaz, L.2
Taing, L.3
Potier, M.C.4
-
19
-
-
79551644361
-
Multiple levels of gene regulation mediate differentiation of the intracellular pathogen Leishmania
-
T. Lahav, D. Sivam, H. Volpin, M. Ronen, P. Tsigankov, and A. Green Multiple levels of gene regulation mediate differentiation of the intracellular pathogen Leishmania Faseb J 25 2011 515 525
-
(2011)
Faseb J
, vol.25
, pp. 515-525
-
-
Lahav, T.1
Sivam, D.2
Volpin, H.3
Ronen, M.4
Tsigankov, P.5
Green, A.6
-
20
-
-
0028685490
-
Fitting a mixture model by expectation maximization to discover motifs in biopolymers
-
T.L. Bailey, and C. Elkan Fitting a mixture model by expectation maximization to discover motifs in biopolymers Proc Int Conf Intell Syst Mol Biol 2 1994 28 36
-
(1994)
Proc Int Conf Intell Syst Mol Biol
, vol.2
, pp. 28-36
-
-
Bailey, T.L.1
Elkan, C.2
-
21
-
-
34848913443
-
Members of a large retroposon family are determinants of post-transcriptional gene expression in Leishmania
-
F. Bringaud, M. Muller, G.C. Cerqueira, M. Smith, A. Rochette, and N.M. El-Sayed Members of a large retroposon family are determinants of post-transcriptional gene expression in Leishmania PLoS Pathog 3 2007 1291 1307
-
(2007)
PLoS Pathog
, vol.3
, pp. 1291-1307
-
-
Bringaud, F.1
Muller, M.2
Cerqueira, G.C.3
Smith, M.4
Rochette, A.5
El-Sayed, N.M.6
-
22
-
-
14744299083
-
Characterization and developmental gene regulation of a large gene family encoding amastin surface proteins in Leishmania spp
-
A. Rochette, F. McNicoll, J. Girard, M. Breton, E. Leblanc, and M.G. Bergeron Characterization and developmental gene regulation of a large gene family encoding amastin surface proteins in Leishmania spp Mol Biochem Parasitol 140 2005 205 220
-
(2005)
Mol Biochem Parasitol
, vol.140
, pp. 205-220
-
-
Rochette, A.1
McNicoll, F.2
Girard, J.3
Breton, M.4
Leblanc, E.5
Bergeron, M.G.6
-
23
-
-
27444434267
-
Distinct 3′-untranslated region elements regulate stage-specific mRNA accumulation and translation in Leishmania
-
F. McNicoll, M. Muller, S. Cloutier, N. Boilard, A. Rochette, and M. Dube Distinct 3′-untranslated region elements regulate stage-specific mRNA accumulation and translation in Leishmania J Biol Chem 280 2005 35238 35246
-
(2005)
J Biol Chem
, vol.280
, pp. 35238-35246
-
-
McNicoll, F.1
Muller, M.2
Cloutier, S.3
Boilard, N.4
Rochette, A.5
Dube, M.6
-
24
-
-
66749156464
-
Organization and evolution of two SIDER retroposon subfamilies and their impact on the Leishmania genome
-
M. Smith, F. Bringaud, and B. Papadopoulou Organization and evolution of two SIDER retroposon subfamilies and their impact on the Leishmania genome BMC Genomics 10 2009 240
-
(2009)
BMC Genomics
, vol.10
, pp. 240
-
-
Smith, M.1
Bringaud, F.2
Papadopoulou, B.3
-
25
-
-
30544435268
-
Evolution of non-LTR retrotransposons in the trypanosomatid genomes: Leishmania major has lost the active elements
-
F. Bringaud, E. Ghedin, G. Blandin, D.C. Bartholomeu, E. Caler, and M.J. Levin Evolution of non-LTR retrotransposons in the trypanosomatid genomes: Leishmania major has lost the active elements Mol Biochem Parasitol 145 2006 158 170
-
(2006)
Mol Biochem Parasitol
, vol.145
, pp. 158-170
-
-
Bringaud, F.1
Ghedin, E.2
Blandin, G.3
Bartholomeu, D.C.4
Caler, E.5
Levin, M.J.6
-
26
-
-
0030602260
-
Characterisation of the novel junctions of two minichromosomes of Leishmania major
-
G. Ortiz, and M. Segovia Characterisation of the novel junctions of two minichromosomes of Leishmania major Mol Biochem Parasitol 82 1996 137 144
-
(1996)
Mol Biochem Parasitol
, vol.82
, pp. 137-144
-
-
Ortiz, G.1
Segovia, M.2
-
27
-
-
0031888083
-
A physical map of the Leishmania major Friedlin genome
-
A.C. Ivens, S.M. Lewis, A. Bagherzadeh, L. Zhang, H.M. Chan, and D.F. Smith A physical map of the Leishmania major Friedlin genome Genome Res 8 1998 135 145
-
(1998)
Genome Res
, vol.8
, pp. 135-145
-
-
Ivens, A.C.1
Lewis, S.M.2
Bagherzadeh, A.3
Zhang, L.4
Chan, H.M.5
Smith, D.F.6
-
28
-
-
0008614282
-
Overproduction of a bifunctional thymidylate synthetase-dihydrofolate reductase and DNA amplification in methotrexate-resistant Leishmania tropica
-
J.A. Coderre, S.M. Beverley, R.T. Schimke, and D.V. Santi Overproduction of a bifunctional thymidylate synthetase-dihydrofolate reductase and DNA amplification in methotrexate-resistant Leishmania tropica Proc Natl Acad Sci USA 80 1983 2132 2136
-
(1983)
Proc Natl Acad Sci USA
, vol.80
, pp. 2132-2136
-
-
Coderre, J.A.1
Beverley, S.M.2
Schimke, R.T.3
Santi, D.V.4
-
29
-
-
0023692421
-
The H, circles of Leishmania tarentolae are a unique amplifiable system of oligomeric DNAs associated with drug resistance
-
T.C. White, F. Fase-Fowler, H. van Luenen, J. Calafat, and P. Borst The H, circles of Leishmania tarentolae are a unique amplifiable system of oligomeric DNAs associated with drug resistance J Biol Chem 263 1988 16977 16983
-
(1988)
J Biol Chem
, vol.263
, pp. 16977-16983
-
-
White, T.C.1
Fase-Fowler, F.2
Van Luenen, H.3
Calafat, J.4
Borst, P.5
-
30
-
-
0029975465
-
Formation of extrachromosomal circular amplicons with direct or inverted duplications in drug-resistant Leishmania tarentolae
-
K. Grondin, G. Roy, and M. Ouellette Formation of extrachromosomal circular amplicons with direct or inverted duplications in drug-resistant Leishmania tarentolae Mol Cell Biol 16 1996 3587 3595
-
(1996)
Mol Cell Biol
, vol.16
, pp. 3587-3595
-
-
Grondin, K.1
Roy, G.2
Ouellette, M.3
-
31
-
-
15044340917
-
Formation of linear inverted repeat amplicons following targeting of an essential gene in Leishmania
-
P.A. Genest, B. ter Riet, C. Dumas, B. Papadopoulou, H.G. van Luenen, and P. Borst Formation of linear inverted repeat amplicons following targeting of an essential gene in Leishmania Nucleic Acids Res 33 2005 1699 1709
-
(2005)
Nucleic Acids Res
, vol.33
, pp. 1699-1709
-
-
Genest, P.A.1
Ter Riet, B.2
Dumas, C.3
Papadopoulou, B.4
Van Luenen, H.G.5
Borst, P.6
-
32
-
-
34547107294
-
Organization of H locus conserved repeats in Leishmania (Viannia) braziliensis correlates with lack of gene amplification and drug resistance
-
F.C. Dias, J.C. Ruiz, W.C. Lopes, F.M. Squina, A. Renzi, and A.K. Cruz Organization of H locus conserved repeats in Leishmania (Viannia) braziliensis correlates with lack of gene amplification and drug resistance Parasitol Res 101 2007 667 676
-
(2007)
Parasitol Res
, vol.101
, pp. 667-676
-
-
Dias, F.C.1
Ruiz, J.C.2
Lopes, W.C.3
Squina, F.M.4
Renzi, A.5
Cruz, A.K.6
-
33
-
-
0142216117
-
A negative regulatory element controls mRNA abundance of the Leishmania mexicana Paraflagellar rod gene PFR2
-
K.K. Mishra, T.R. Holzer, L.L. Moore, and J.H. LeBowitz A negative regulatory element controls mRNA abundance of the Leishmania mexicana Paraflagellar rod gene PFR2 Eukaryot Cell 2 2003 1009 1017
-
(2003)
Eukaryot Cell
, vol.2
, pp. 1009-1017
-
-
Mishra, K.K.1
Holzer, T.R.2
Moore, L.L.3
Lebowitz, J.H.4
-
34
-
-
41149170097
-
Deadenylation-independent stage-specific mRNA degradation in Leishmania
-
S. Haile, A. Dupe, and B. Papadopoulou Deadenylation-independent stage-specific mRNA degradation in Leishmania Nucleic Acids Res 36 2008 1634 1644
-
(2008)
Nucleic Acids Res
, vol.36
, pp. 1634-1644
-
-
Haile, S.1
Dupe, A.2
Papadopoulou, B.3
-
35
-
-
77649318621
-
Digital gene expression analysis of two life cycle stages of the human-infective parasite, Trypanosoma brucei gambiense reveals differentially expressed clusters of co-regulated genes
-
N.J. Veitch, P.C. Johnson, U. Trivedi, S. Terry, D. Wildridge, and A. MacLeod Digital gene expression analysis of two life cycle stages of the human-infective parasite, Trypanosoma brucei gambiense reveals differentially expressed clusters of co-regulated genes BMC Genomics 11 2010 124
-
(2010)
BMC Genomics
, vol.11
, pp. 124
-
-
Veitch, N.J.1
Johnson, P.C.2
Trivedi, U.3
Terry, S.4
Wildridge, D.5
MacLeod, A.6
-
36
-
-
10744220441
-
Gene synteny and evolution of genome architecture in trypanosomatids
-
E. Ghedin, F. Bringaud, J. Peterson, P. Myler, M. Berriman, and A. Ivens Gene synteny and evolution of genome architecture in trypanosomatids Mol Biochem Parasitol 134 2004 183 191
-
(2004)
Mol Biochem Parasitol
, vol.134
, pp. 183-191
-
-
Ghedin, E.1
Bringaud, F.2
Peterson, J.3
Myler, P.4
Berriman, M.5
Ivens, A.6
-
38
-
-
0032787745
-
Identification of cis and trans elements involved in the cell cycle regulation of multiple genes in Crithidia fasciculata
-
R. Mahmood, J.C. Hines, and D.S. Ray Identification of cis and trans elements involved in the cell cycle regulation of multiple genes in Crithidia fasciculata Mol Cell Biol 19 1999 6174 6182
-
(1999)
Mol Cell Biol
, vol.19
, pp. 6174-6182
-
-
Mahmood, R.1
Hines, J.C.2
Ray, D.S.3
-
39
-
-
23044509170
-
Assigning functions to genes: Identification of S-phase expressed genes in Leishmania major based on post-transcriptional control elements
-
A. Zick, I. Onn, R. Bezalel, H. Margalit, and J. Shlomai Assigning functions to genes: identification of S-phase expressed genes in Leishmania major based on post-transcriptional control elements Nucleic Acids Res 33 2005 4235 4242
-
(2005)
Nucleic Acids Res
, vol.33
, pp. 4235-4242
-
-
Zick, A.1
Onn, I.2
Bezalel, R.3
Margalit, H.4
Shlomai, J.5
-
40
-
-
36349007550
-
Coordinate regulation of a family of promastigote-enriched mRNAs by the 3′UTR PRE element in Leishmania mexicana
-
T.R. Holzer, K.K. Mishra, J.H. LeBowitz, and J.D. Forney Coordinate regulation of a family of promastigote-enriched mRNAs by the 3′UTR PRE element in Leishmania mexicana Mol Biochem Parasitol 157 2008 54 64
-
(2008)
Mol Biochem Parasitol
, vol.157
, pp. 54-64
-
-
Holzer, T.R.1
Mishra, K.K.2
Lebowitz, J.H.3
Forney, J.D.4
-
41
-
-
70549084861
-
Transcriptome analysis of differentiating trypanosomes reveals the existence of multiple post-transcriptional regulons
-
R. Queiroz, C. Benz, K. Fellenberg, J.D. Hoheisel, and C. Clayton Transcriptome analysis of differentiating trypanosomes reveals the existence of multiple post-transcriptional regulons BMC Genomics 10 2009 495
-
(2009)
BMC Genomics
, vol.10
, pp. 495
-
-
Queiroz, R.1
Benz, C.2
Fellenberg, K.3
Hoheisel, J.D.4
Clayton, C.5
|