-
1
-
-
0020321767
-
Novel proteinaceous infectious particles cause scrapie
-
Prusiner SB.Novel proteinaceous infectious particles cause scrapie.Science 1998;216:136-144.
-
(1998)
Science
, vol.216
, pp. 136-144
-
-
Prusiner, S.B.1
-
2
-
-
0035961329
-
The structural basis of protein folding and its links with human disease
-
Dobson C.The structural basis of protein folding and its links with human disease.Philos Trans R Soc London B 2001;356:133-145.
-
(2001)
Philos Trans R Soc London B
, vol.356
, pp. 133-145
-
-
Dobson, C.1
-
4
-
-
33644941607
-
Elongated oligomers assemble into mammalian prp amyloid fibrils
-
Tattum M, Cohen-Krausz S, Kalili-Shirzi A, Jackson G, Orolova E, Collinge J, Clarke A, Saibil H.Elongated oligomers assemble into mammalian prp amyloid fibrils.J Mol Biol 2006;357:975-985.
-
(2006)
J Mol Biol
, vol.357
, pp. 975-985
-
-
Tattum, M.1
Cohen-Krausz, S.2
Kalili-Shirzi, A.3
Jackson, G.4
Orolova, E.5
Collinge, J.6
Clarke, A.7
Saibil, H.8
-
6
-
-
70350134002
-
Natural and synthetic prion structure from x-ray fiber diffraction
-
Wille H, Bian W, McDonald M, Kendall A, Colby DW, Bloch L, Ollesch J, Brovinskiy AL, Cohen FE, Prusiner SB, Stubbs G.Natural and synthetic prion structure from x-ray fiber diffraction.Proc Natl Acad Sci USA 2009;106:16990-16995.
-
(2009)
Proc Natl Acad Sci USA
, vol.106
, pp. 16990-16995
-
-
Wille, H.1
Bian, W.2
McDonald, M.3
Kendall, A.4
Colby, D.W.5
Bloch, L.6
Ollesch, J.7
Brovinskiy, A.L.8
Cohen, F.E.9
Prusiner, S.B.10
Stubbs, G.11
-
7
-
-
33750310849
-
Prions and their partners in crime
-
Caughey B, Baron G.Prions and their partners in crime.Nature 2006;443:803-810.
-
(2006)
Nature
, vol.443
, pp. 803-810
-
-
Caughey, B.1
Baron, G.2
-
9
-
-
0012710491
-
NMR solution structure of the human prion protein
-
Zahn R, Liu A, Lührs T, Riek R, Schroetter C, García FL, Billeter M, Calzolai L, Wider G, Wüthrich K.NMR solution structure of the human prion protein.Proc Natl Acad Sci USA 2000;97:45-150.
-
(2000)
Proc Natl Acad Sci USA
, vol.97
, pp. 45-150
-
-
Zahn, R.1
Liu, A.2
Lührs, T.3
Riek, R.4
Schroetter, C.5
García, F.L.6
Billeter, M.7
Calzolai, L.8
Wider, G.9
Wüthrich, K.10
-
11
-
-
33750361540
-
Reversibility of prion-induced neurodegeneration
-
Lansbury P, Lashuel H.Reversibility of prion-induced neurodegeneration.Nature 2006;443:774-779.
-
(2006)
Nature
, vol.443
, pp. 774-779
-
-
Lansbury, P.1
Lashuel, H.2
-
12
-
-
0036708438
-
Exploring the propensities of helices in PRPC to form sheet using NMR structures and sequence alignments
-
Dima RI, Thirumalai D.Exploring the propensities of helices in PRPC to form sheet using NMR structures and sequence alignments.Biophys J 2002;83:1268-1280.
-
(2002)
Biophys J
, vol.83
, pp. 1268-1280
-
-
Dima, R.I.1
Thirumalai, D.2
-
13
-
-
33846811599
-
β-Sheet core of human prion protein amyloid fibrils as determined by hydrogen/deuterium exchange
-
Lu X, Wintrode PL, Surewicz WK.β-Sheet core of human prion protein amyloid fibrils as determined by hydrogen/deuterium exchange.Proc Natl Acad Sci USA 2007;104:1510-1515.
-
(2007)
Proc Natl Acad Sci USA
, vol.104
, pp. 1510-1515
-
-
Lu, X.1
Wintrode, P.L.2
Surewicz, W.K.3
-
14
-
-
0028338441
-
Structural clues to prion replication
-
Cohen FE, Pan KM, Huang Z, Baldwin M, Fletterick RJ, Prusiner SB.Structural clues to prion replication.Science 1994;264:530-531.
-
(1994)
Science
, vol.264
, pp. 530-531
-
-
Cohen, F.E.1
Pan, K.M.2
Huang, Z.3
Baldwin, M.4
Fletterick, R.J.5
Prusiner, S.B.6
-
15
-
-
7444240183
-
Probing the instabilities in the dynamics of helical fragments from mouse PRPC
-
Dima RI, Thirumalai D.Probing the instabilities in the dynamics of helical fragments from mouse PRPC.Proc Natl Acad Sci USA 2004;101:15335-15340.
-
(2004)
Proc Natl Acad Sci USA
, vol.101
, pp. 15335-15340
-
-
Dima, R.I.1
Thirumalai, D.2
-
16
-
-
62449276454
-
Left-handed β-helical models for mammalian prion fibrils
-
Kunes KC, Clark SC, Cox DL, Singh RRP.Left-handed β-helical models for mammalian prion fibrils.Prion 2009;2:2;81-90.
-
(2009)
Prion
, vol.2
, Issue.2
, pp. 81-90
-
-
Kunes, K.C.1
Clark, S.C.2
Cox, D.L.3
Singh, R.R.P.4
-
17
-
-
0031592945
-
Common core structure of amyloid fibrils by synchrotron X-ray diffraction
-
Sunde M, Serpell L, Bartlam M, Fraser P, Pepys M, Blake C.Common core structure of amyloid fibrils by synchrotron X-ray diffraction.J Mol Biol 1997;273:729-739.
-
(1997)
J Mol Biol
, vol.273
, pp. 729-739
-
-
Sunde, M.1
Serpell, L.2
Bartlam, M.3
Fraser, P.4
Pepys, M.5
Blake, C.6
-
18
-
-
0027332116
-
Conversion of alpha-helices into beta-sheets features in the formation of the scrapie prion proteins
-
Pan KM, Baldwin M, Nguyen J, Gasset M, Serban A, Groth D, Mehlhorn HZ, Fletterick RJ, Cohen FE
-
Pan KM, Baldwin M, Nguyen J, Gasset M, Serban A, Groth D, Mehlhorn HZ, Fletterick RJ, Cohen FE.Conversion of alpha-helices into beta-sheets features in the formation of the scrapie prion proteins.Proc Natl Acad Sci USA 1993;23:10962-10966.
-
(1993)
Proc Natl Acad Sci USA
, vol.23
, pp. 10962-10966
-
-
-
19
-
-
58849122772
-
Non-local helix formation is key to understanding s-adenosylmethionine-1 riboswitch function
-
Whitford PC, Schug A, Saunders J, Hennelly SP, Onuchic JN, Sanbonmatsu KY.Non-local helix formation is key to understanding s-adenosylmethionine-1 riboswitch function.Biophys J 2009;96:L7-L9.
-
(2009)
Biophys J
, vol.96
-
-
Whitford, P.C.1
Schug, A.2
Saunders, J.3
Hennelly, S.P.4
Onuchic, J.N.5
Sanbonmatsu, K.Y.6
-
20
-
-
77953080085
-
Exploring atomic resolution physiology on a femtosecond to millisecond timescale using molecular dynamics simulations
-
Dror RO, Jensen M, Borhani DW, Shaw DE.Exploring atomic resolution physiology on a femtosecond to millisecond timescale using molecular dynamics simulations.J Gen Physiol 2010;135:555-562.
-
(2010)
J Gen Physiol
, vol.135
, pp. 555-562
-
-
Dror, R.O.1
Jensen, M.2
Borhani, D.W.3
Shaw, D.E.4
-
21
-
-
63449135082
-
An all-atom structure-based potential for proteins: bridging minimal models with all-atom empirical forcefields
-
Whitford PC, Noel JK, Gosavi S, Schug A, Sanbonmatsu KY, Onuchic JN.An all-atom structure-based potential for proteins: bridging minimal models with all-atom empirical forcefields.Proteins 2009;75:430-441.
-
(2009)
Proteins
, vol.75
, pp. 430-441
-
-
Whitford, P.C.1
Noel, J.K.2
Gosavi, S.3
Schug, A.4
Sanbonmatsu, K.Y.5
Onuchic, J.N.6
-
22
-
-
0017842051
-
Studies on protein folding, unfolding, and fluctuations by computer simulation. II. A three-dimensional lattice emodel of lysozyme
-
Uedo Y, Taketomi H, Go N.Studies on protein folding, unfolding, and fluctuations by computer simulation. II. A three-dimensional lattice emodel of lysozyme.Biopolymers 1978;17:1531-1548.
-
(1978)
Biopolymers
, vol.17
, pp. 1531-1548
-
-
Uedo, Y.1
Taketomi, H.2
Go, N.3
-
23
-
-
3142782241
-
Quantifying the roughness on the free energy landscape: entropic bottlenecks and protein folding rates
-
Chavez LL, Onuchic JN, Clementi C.Quantifying the roughness on the free energy landscape: entropic bottlenecks and protein folding rates.J Am Chem Soc 2004;126:8426-8432.
-
(2004)
J Am Chem Soc
, vol.126
, pp. 8426-8432
-
-
Chavez, L.L.1
Onuchic, J.N.2
Clementi, C.3
-
24
-
-
22244493867
-
Determination of barrier heights and prefactors from protein folding rate data
-
Plotkin SS.Determination of barrier heights and prefactors from protein folding rate data.Biophys J 2005;88:3762-3769.
-
(2005)
Biophys J
, vol.88
, pp. 3762-3769
-
-
Plotkin, S.S.1
-
25
-
-
36749023459
-
Mutations as trapdoors to two competing native conformations of the rop-dimer
-
Schug A, Whitford PC, Levy Y, Onuchic JN.Mutations as trapdoors to two competing native conformations of the rop-dimer.Proc Natl Acad Sci USA 2007;104:17674-17679.
-
(2007)
Proc Natl Acad Sci USA
, vol.104
, pp. 17674-17679
-
-
Schug, A.1
Whitford, P.C.2
Levy, Y.3
Onuchic, J.N.4
-
26
-
-
33747065536
-
Multiple-basin energy landscapes for large-amplitude conformational motions of proteins: structure-based molecular dynamics simulations
-
Okazaki K, Nobuyasu K, Takada S, Onuchic JN, Wolynes PG.Multiple-basin energy landscapes for large-amplitude conformational motions of proteins: structure-based molecular dynamics simulations.Proc Natl Acad Sci USA 2006;103:11844-11849.
-
(2006)
Proc Natl Acad Sci USA
, vol.103
, pp. 11844-11849
-
-
Okazaki, K.1
Nobuyasu, K.2
Takada, S.3
Onuchic, J.N.4
Wolynes, P.G.5
-
27
-
-
70449931860
-
Robustness and generalization of structure-based models for protein folding and function
-
Lammert H, Schug A, Onuchic JN.Robustness and generalization of structure-based models for protein folding and function.Proteins 2009;77:881-891.
-
(2009)
Proteins
, vol.77
, pp. 881-891
-
-
Lammert, H.1
Schug, A.2
Onuchic, J.N.3
-
28
-
-
2342471328
-
Simulation of an ensemble of conformational transitions in a united-residue model of calmodulin
-
Zucherman DM.Simulation of an ensemble of conformational transitions in a united-residue model of calmodulin.J Phys Chem B 2007;108:5127-5137.
-
(2007)
J Phys Chem B
, vol.108
, pp. 5127-5137
-
-
Zucherman, D.M.1
-
29
-
-
22244447465
-
Overcoming residual frustration in domain-swapping: the roles of disulfide bonds in dimerization and aggregation
-
Cho SS, Levy Y, Onuchic JN.Overcoming residual frustration in domain-swapping: the roles of disulfide bonds in dimerization and aggregation.Phys Bio 2005;2:S44-S55.
-
(2005)
Phys Bio
, vol.2
-
-
Cho, S.S.1
Levy, Y.2
Onuchic, J.N.3
-
30
-
-
67649856815
-
Direct single molecule observation of a protein living in two opposed native structures
-
Gambin Y, Schug A, Lemke EA, Lavinder JJ, Ferreon ACM, Magliery TJ, Onuchic JN, Deniz AA.Direct single molecule observation of a protein living in two opposed native structures.Proc Natl Acad Sci USA 2009;106:10153-10158.
-
(2009)
Proc Natl Acad Sci USA
, vol.106
, pp. 10153-10158
-
-
Gambin, Y.1
Schug, A.2
Lemke, E.A.3
Lavinder, J.J.4
Ferreon, A.C.M.5
Magliery, T.J.6
Onuchic, J.N.7
Deniz, A.A.8
-
32
-
-
0029937340
-
Molecular docking using surface complementarity
-
Sobolev V, Wade R, Vried G, Edelman M.Molecular docking using surface complementarity.Proteins 1996;25:120-129.
-
(1996)
Proteins
, vol.25
, pp. 120-129
-
-
Sobolev, V.1
Wade, R.2
Vried, G.3
Edelman, M.4
-
33
-
-
0035789518
-
Gromacs 3.0: a package for molecular simulation and trajectory analysis
-
Lindahl E, Hess B, van der Spoel D.Gromacs 3.0: a package for molecular simulation and trajectory analysis.J Mol Mod 2001;14:306-317.
-
(2001)
J Mol Mod
, vol.14
, pp. 306-317
-
-
Lindahl, E.1
Hess, B.2
van der Spoel, D.3
-
34
-
-
33750587438
-
Molecular-dynamics with coupling to an external bath
-
Berendsen H, Postma J, VanGunsteren W, Dinola A, Haak J.Molecular-dynamics with coupling to an external bath.J Chem Phys 1984;81:3684-3690.
-
(1984)
J Chem Phys
, vol.81
, pp. 3684-3690
-
-
Berendsen, H.1
Postma, J.2
VanGunsteren, W.3
Dinola, A.4
Haak, J.5
-
35
-
-
52949088587
-
Statistically optimal analysis of samples from multiple equilibrium states
-
Shirts MR, Chodera JD.Statistically optimal analysis of samples from multiple equilibrium states.J Chem Phys 2008;129:124105-124114.
-
(2008)
J Chem Phys
, vol.129
, pp. 124105-124114
-
-
Shirts, M.R.1
Chodera, J.D.2
-
36
-
-
4243819810
-
New Monte Carlo technique for studying phase transitions
-
Ferrenberg A, Swendsen R.New Monte Carlo technique for studying phase transitions.Phys Rev Lett 1988;61:2635-2638.
-
(1988)
Phys Rev Lett
, vol.61
, pp. 2635-2638
-
-
Ferrenberg, A.1
Swendsen, R.2
-
37
-
-
33646987405
-
Optimized monte-carlo data analysis
-
Ferrenberg A, Swendsen R.Optimized monte-carlo data analysis.Phys Rev Lett 1989;63:1195-1198.
-
(1989)
Phys Rev Lett
, vol.63
, pp. 1195-1198
-
-
Ferrenberg, A.1
Swendsen, R.2
-
38
-
-
0023676109
-
Purification and properties of the cellular and scrapie hamster prion proteins
-
Turk E, Teplow DB, Hood LE, Prusiner SB.Purification and properties of the cellular and scrapie hamster prion proteins.Eur J Biochem 1988;176:21-30.
-
(1988)
Eur J Biochem
, vol.176
, pp. 21-30
-
-
Turk, E.1
Teplow, D.B.2
Hood, L.E.3
Prusiner, S.B.4
-
39
-
-
0034819513
-
Oxidative folding of murion prion mprp(23-231)
-
Lu BY, Beck PJ, Chang JY.Oxidative folding of murion prion mprp(23-231).Eur J Biochem 2001;268:3767-3773.
-
(2001)
Eur J Biochem
, vol.268
, pp. 3767-3773
-
-
Lu, B.Y.1
Beck, P.J.2
Chang, J.Y.3
-
40
-
-
0037031950
-
Intramolecular versus intermolecular disulfide bonds in prion proteins
-
Welker E, Raymond LD, Scheraga HA, Caughey B.Intramolecular versus intermolecular disulfide bonds in prion proteins.J Biol Chem 2002;277:33477-33481.
-
(2002)
J Biol Chem
, vol.277
, pp. 33477-33481
-
-
Welker, E.1
Raymond, L.D.2
Scheraga, H.A.3
Caughey, B.4
-
41
-
-
50449096951
-
The dual-basin landscape in GFP folding
-
Andrews BT, Gosavi S, Finke JM, Onuchic JN, Jennings PA.The dual-basin landscape in GFP folding.Proc Natl Acad Sci USA 2008;105:12283-12288.
-
(2008)
Proc Natl Acad Sci USA
, vol.105
, pp. 12283-12288
-
-
Andrews, B.T.1
Gosavi, S.2
Finke, J.M.3
Onuchic, J.N.4
Jennings, P.A.5
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