Genetic diversity of avian infectious bronchitis coronavirus in recent years in China

Avian Diseases

Volumn 56, Issue 1, 2012, Pages 15-28

  Ma, Huijie ^a   Shao, Yuhao ^a   Sun, Chuyang ^a   Han, Zongxi ^a   Liu, Xiaoli ^a   Guo, Hongbo ^a   Liu, Xiaozhen ^a   Kong, Xiangang ^a   Liu, Shengwang ^a  

^a INSTITUTE OF PLANT PROTECTION   (China)

Author keywords

avian infectious bronchitis coronavirus; emergence; genetic diversity; TW II type

Indexed keywords

AVIAN INFECTIOUS BRONCHITIS VIRUS;

EID: 84859329076     PISSN: 00052086     EISSN: None     Source Type: Journal    
DOI: 10.1637/9804-052011-Reg.1     Document Type: Article

References (66)

1. Adzhar, A., R. E. Gough, D. Haydon, K. Shaw, P. Britton, and D. Cavanagh. Molecular analysis of the 793/B serotype of infectious bronchitis virus in Great Britain. Avian Pathol. 26:625-640. 1997.
2. Armesto, M., D. Cavanagh, and P. Britton. The replicase gene of avian coronavirus infectious bronchitis virus is a determinant of pathoge-nicity. PLoS One 4:e7384. 2009.
3. Bing, G. X., X. Liu, J. Pu, Q. F. Liu, Q. M. Wu, and J. H. Liu. Different genotypes of nephropathogenic infectious bronchitis viruses co-circulating in chicken population in China. Virus Genes 35:333-337. 2007.
4. Cao, J., C. C. Wu, and T. L. Lin. Complete nucleotide sequence of polyprotein gene 1 and genome organization of turkey coronavirus. Virus Res. 136:43-49. 2008.
5. Casais, R., M. Davies, D. Cavanagh, and P. Britton. Gene 5 of the avian coronavirus infectious bronchitis virus is not essential for replication. J. Virol. 79:8065-8078. 2005.
6. Cavanagh, D. Coronavirus avian infectious bronchitis virus. Vet. Res. 38:281-297. 2007.
7. Cavanagh, D., P. J. Davis, J. K. Cook, D. Li, A. Kant, and G. Koch. Location of the amino acid differences in the S1 spike glycoprotein subunit of closely related serotypes of infectious bronchitis virus. Avian Pathol. 21:33-43. 1992.
8. Cavanagh, D., P. J. Davis, and A. P. A. Mockett. Amino acids within hypervariable region 1 of avian coronavirus IBV (Massachusetts serotype) spike glycoprotein are associated with neutralization epitopes. Virus Res. 11:141-150. 1988.
9. Cavanagh, D., and J. Gelb. Infectious bronchitis. In: Diseases of poultry, 12th ed. Y. M. Saif, A. M. Fadly, J. R. Glisson, L. R. McDougald, L. K. Nolan, and D. E. Swayne, eds. Wiley-Blackwell Publishing, Ames, IA. pp. 117-135. 2008.
10. Cavanagh, D., K. Mawditt, M. Sharma, S. E. Drury, and H. L. Ainsworth. Detection of a coronavirus from turkey poults in Europe genetically related to infectious bronchitis virus of chickens. Avian Pathol. 30:355-368. 2001.
11. Cavanagh, D., K. Mawditt, D. B. Welchman, P. Britton, and R. E. Gough. Coronaviruses from pheasants (Phasianus colchicus) are genetically closely related to coronaviruses of domestic fowl (infectious bronchitis virus) and turkeys. Avian Pathol. 31:81-93. 2002.
12. Chen, H. W., Y. P. Huang, and C. H. Wang. Identification of Taiwan and China-like recombinant avian infectious bronchitis viruses in Taiwan. Virus Res. 140:121-129. 2009.
13. de Groot, R. J., J. Ziebuhr, L. L. Poon, P. C. Woo, P. Talbot, P. J. M. Rottier, K. V. Holmes, R. Baric, S. Perlman, L. Enjuanes, and A. E. Gorbalenya. Revision of the family Coronaviridae. Taxonomic proposal to the ICTV Executive Committee. 1-37. 2008.
14. de Wit, J. J., M. C. M. de Jong, A. Pijpers, and J. H. M. Verheijden. Transmission of infectious bronchitis virus within vaccinated and unvacci-nated groups of chickens. Avian Pathol. 27:464-471. 1998.
15. Dolz, R., J. Pujols, G. Ordóñez, R. Porta, and N. Majó. Antigenic and molecular characterization of isolates of the Italy 02 infectious bronchitis virus genotype. Avian Pathol. 35:77-85. 2006.
16. Dolz, R., J. Pujols, G. Ordóñez, R. Porta, and N. Majó. Molecular epidemiology and evolution of avian infectious bronchitis virus in Spain over a fourteen-year period. Virology 374:50-59. 2008.
17. Domingo, E., E. Martinez-Salas, F. Sobrino, J. C. de la Torre, A. Portela, J. Ortin, C. Lopez-Galindez, P. Perez-Brena, N. Villanueva, R. Najera, S. Vandepol, D. Steinhauer, N. Depolo, and J. J. Holland. The quasispecies (extremely heterogeneous) nature of viral RNA genome populations: biological relevance-a review. Gene 40:1-8. 1985.
18. Dong, B. Q., W. Liu, X. H. Fan, D. Vijaykrishna, and X. C. Tang. Detection of a novel and highly divergent coronavirus from Asian leopard cats and Chinese ferret badgers in Southern China. J. Virol. 81:6920-6926. 2007.
19. Farsang, A., C. Ros, L. H. M. Renstrom, C. Baule, T. Soós, and S. Belák. Molecular epizootiology of infectious bronchitis virus in Sweden indicating the involvement of a vaccine strain. Avian Pathol. 31:229-236. 2002.
20. Fu, K., and R. S. Baric. Evidence for variable rates of recombination in the MHV genome. Virology 189:88-102. 1992.
21. Fu, K., and R. S. Baric. Map locations of mouse hepatitis virus temperature sensitive mutants: confirmation of variable rates of recombination. J. Virol. 68:7458-7466. 1994.
22. Geerligs, H. J., G.-J. Boelm, C. A. M. Meinders, B. G. E. Stuurman, J. Symous, J. Tarres-Call, T. Bru, R. Vila, M. Mombarg, K. Karaca, W. Wijmenga, and M. Kumar. Efficacy and safety of an attenuated live QX-like infectious bronchitis virus strain as a vaccine for chickens. Avian Pathol. 40:93-102. 2011.
23. Gelb, J., Jr., J. B. Wolff, and C. A. Moran. Variant serotypes of infectious bronchitis virus isolated from commercial layer and broiler chickens. Avian Dis. 35:82-87. 1991.
24. Gomaa, M. H., J. R. Barta, D. Ojkic, and D. Yoo. Complete genomic sequence of turkey coronavirus. Virus Res. 135:237-246. 2008.
25. Guy, J. S. Turkey coronavirus is more closely related to avian infectious bronchitis virus than to mammalian coronaviruses: a review. Avian Pathol. 29:207-212. 2000.
26. Han, Z., C. Sun, B. Yan, X. Zhang, Y. Wang, C. Li, Q. Zhang, Y. Ma, Y. Shao, Q. Liu, X. Kong, and S. Liu. A 15-year analysis of molecular epidemiology of avian infectious bronchitis coronavirus in China. Infect. Genet. Evol. 11:190-200. 2011.
27. Huang, Y. P., H. C. Lee, M. C. Cheng, and C. H. Wang. S1 and N gene analysis of avian infectious bronchitis viruses in Taiwan. Avian Dis. 48:581-589. 2004.
28. Huang, Y. P., and C. H. Wang. Development of attenuated vaccines from Taiwanese infectious bronchitis virus strains. Vaccine 24:785-791. 2006.
29. Huang, Y. P., and C. H. Wang. Sequence changes of infectious bronchitis virus isolates in the 39 7.3 kb of the genome after attenuating passage in embryonated eggs. Avian Pathol. 36:59-67. 2007.
30. Irvine, R. M., W. J. Cox, V. Ceeraz, S. M. Reid, R. J. Ellis, R. M. Jones, J. Errington, A. M. Wood, C. McVicar, and M. I. Clark. Detection of IBV QX in commercial broiler flocks in the UK. Vet. Rec. 167:877-879. 2011.
31. Janies, D., F. Habib, B. Alexandrov, A. Hill, and D. Pol. Evolution of genomes, host shifts and the geographic spread of SARS-CoV and related coronaviruses. Cladistics 24:111-130. 2008.
32. Jia, W., K. Karaca, C. R. Parrish, and S. A. Naqi. A novel variant of avian infectious bronchitis virus resulting from recombination among three different strains. Arch. Virol. 140:259-271. 1995.
33. Johannesen, J., W. Wickler, U. Seibt, and F. Moritz. Population history in social spiders repeated: colony structure and lineage evolution in Stegodyphus mimosarum (Eresidae). Mol. Ecol. 18:2812-2818. 2009.
34. Jonassen, C. M., T. Kofstad, I. L. Larsen, A. Lovland, and K. Handeland. Molecular identification and characterization of novel corona-viruses infecting graylag geese (Anser anser), feral pigeons (Columbia livia) and mallards (Anas platyrhynchos). J. Gen. Virol. 86:1597-1607. 2005.
35. Jones, R. C. Viral respiratory diseases (ILT, aMPV infections, IB): are they ever under control? British Poultry Science 51:1-11. 2010.
36. Kuo, S. M., C. H. Wang, M. H. Hou, Y. P. Huang, H. W. Kao, and H. L. Su. Evolution of infectious bronchitis virus in Taiwan: characterisation of RNA recombination in the nucleocapsid gene. Vet. Microbiol. 144:293-302. 2011.
37. Kusters, J. G., E. J. Jager, H. G. Niesters, and B. A. van der Zeijst. Sequence evidence for RNA recombination in field isolates of avian infectious bronchitis virus. Vaccine 8:605-608. 1990.
38. Lee, C. W. Evolution of avian infectious bronchitis virus: genetic drift and recombination. Korean J. Vet. Serv. 25:97-103. 2002.
39. Li, H., and H. C. Yang. Sequence analysis of nephropathogenic infectious bronchitis virus strains of the Massachusetts genotype in Beijing. Avian Pathol. 30:535-541. 2001.
40. Lim, T.-H., H.-J. Lee, D.-H. Lee, Y.-N. Lee, J.-K. Park, H-N. Youn, M.-S. Kim, J.-B. Lee, S.-Y. Park, I.-S. Choi, and C.-S. Song. An emerging recombinant cluster of nephropathogenic strains of avian infectious bronchitis virus in Korea. Infect. Genet. Evol. 11:678-685. 2011.
41. Lin, T. L., C. C. Loa, and C. C. Wu. Complete sequences of 39 end coding region for structural protein genes of turkey coronavirus. Virus Res. 106:61-70. 2004.
42. Liu, S., J. Chen, J. Chen, X. Kong, Y. Shao, Z. Han, and G. Tong. Isolation of avian infectious bronchitis coronavirus from domestic peafowl (Pavo cristatus) and teal (Anas). J. Gen. Virol. 86:719-725. 2005.
43. Liu, S., J. Chen, Z. Han, Q. Zhang, Y. Shao, and X. Kong. Infectious bronchitis virus: S1 gene characteristics of vaccines used in China and efficacy of vaccination against heterologous strains from China. Avian Pathol. 35:394-399. 2006.
44. Liu, S., and X. Kong. A new genotype of nephropathogenic infectious bronchitis virus circulating in vaccinated and non-vaccinated flocks in China. Avian Pathol. 33:321-327. 2004.
45. Liu, S., Y. Wang, Y. Ma, Z. Han, Q. Zhang, Y. Shao, J. Chen, and X. Kong. Identification of a newly isolated avian infectious bronchitis coronavirus variant in China exhibiting affinity for the respiratory tract. Avian Dis. 52:306-314. 2008.
46. Liu, S., X. Zhang, L. Gong, B. Yan, C. Li, Z. Han, Y. Shao, H. Li, and X. Kong. Altered pathogenicity, immunogenicity, tissue tropism and 397kb region sequence of an avian infectious bronchitis coronavirus strain after serial passage in embryos. Vaccine 27:4630-4640. 2009.
47. Liu, S., X. Zhang, Y. Wang, C. Li, Q. Liu, Z. Han, Q. Zhang, X. Kong, and G. Tong. Evaluation of the protection conferred by commercial vaccines and attenuated heterologous isolates in China against the CK/CH/LDL/97I strain of infectious bronchitis coronavirus. Vet. J. 179:130-136. 2009.
48. Makino, S., J. G. Keck, S. A. Stohlman, and M. M. Lai. High-frequency RNA recombination of murine coronaviruses. J. Virol. 57: 729-737. 1986.
49. Masters, P. S. The molecular biology of coronaviruses. Adv. Virus Res. 66:193-292. 2006.
50. Mihindukulasuriya, K. A., G. Wu, J. St Leger, R. W. Nordhausen, and D. Wang. Identification of a novel coronavirus from a beluga whale by using a panviral microarray. J. Virol. 82:5084-5088. 2008.
51. Reed, L. J., and H. Muench. A simple method of estimating fifty percent endpoints. Am. J. Hyg. 27:493-497. 1938.
52. Rimondi, A., M. I. Craig, A. Vagnozzi, G. Konig, M. Delamer, and A. Pereda. Molecular characterization of avian infectious bronchitis virus strains from outbreaks in Argentina (2001-2008). Avian Pathol. 38: 149-153. 2009.
53. Roussan, D. A., G. Y. Khawaldeh, and I. A. Shaheen. Infectious bronchitis virus in Jordanian chickens: seroprevalence and detection. Can. Vet. J. 50:77-80. 2009.
54. Song, C. S., and Y. J. Lee. Molecular and epidemiological characteristics of infectious bronchitis virus isolated in Korea. Korean J. Poultry Sci. 2:91-98. 2000.
55. Sun, C., Z. Han, H. Ma, Q. Zhang, B. Yan, Y. Shao, J. Xu, X. Kong, and S. Liu. Phylogenetic analysis of infectious bronchitis coronaviruses newly isolated in China, and pathogenicity and evaluation of protection induced by Massachusetts serotype H120 vaccine against QX-like strains. Avian Pathol. 40:43-54. 2011.
56. Swofford, D. L. PAUP: phylogenetic analysis using parsimony (*and other methods), version 4.0. Sinauer Associates, Sunderland, MA, 1999.
57. Wang, C. H., and Y. C. Huang. Relationship between serotypes and genotypes based on the hypervariable region of the S1 gene of infectious bronchitis virus. Arch. Virol. 145:291-300. 2000.
58. Wang, C. H., and C. T. Tsai. Genetic grouping for the isolates of avian infectious bronchitis virus in Taiwan. Arch. Virol. 141:1677-1688. 1996.
59. Wang, H. N., Q. Z. Wu, Y. Huang, and P. Liu. Isolation and identification of infectious bronchitis virus from chickens in Sichuan, China. Avian Dis. 41:279-282. 1997.
60. Wang, L., D. Junker, and E. V. Collisson. Evidence of natural recombination within the S1 gene of infectious bronchitis virus. Virology 192:710-716. 1993.
61. Wang, Y. D., Y. L. Wang, Z. Zhang, G. Fan, Y. Jiang, X. Liu, J. Ding, and S. Wang. Isolation and identification of glandular stomach type IBV (QX IBV) in chickens. Chin. J. Anim. Quarantine 15:1-3. 1998.
62. Woo, P. C., S. K. Lau, Y. Huang, and K. Y. Yuen. Coronavirus diversity, phylogeney and interspecies jumping. Exp. Biol. Med. (Maywood) 234:1117-1127. 2009.
63. Woo, P. C., S. K. Lau, C. S. Lam, K. K. Lai, and Y. Huang. Comparative analysis of complete genome sequences of three avian coronaviruses reveals a novel group 3c coronavirus. J. Virol. 83:908-917. 2009.
64. Xu, C., J. Zhao, X. Hu, and G. Zhang. Isolation and identification of four infectious bronchitis virus strains in China and analyses of their S1 glycoprotein gene. Vet. Microbiol. 122:61-71. 2007.
65. Yu, L., Z. Wang, Y. Jiang, S. Low, and J. Kwang. Molecular epidemiology of infectious bronchitis virus isolates from China and Southeast Asia. Avian Dis. 45:201-209. 2001.
66. Zou, N. L., F. F. Zhao, Y. P. Wang, P. Liu, S. J. Cao, X. T. Wen, and Y. Huang. Genetic analysis revealed LX4 genotype strains of avian infectious bronchitis virus became predominant in recent years in Sichuan area, China. Virus Genes 41:202-209. 2010.