16S rRNA-based identification of a glucan-hyperproducing weissella confusa

Enzyme Research

Volumn 2011, Issue 1, 2011, Pages

  Shukla, Shraddha ^a   Goyal, Arun ^a  

^a INDIAN INSTITUTE OF TECHNOLOGY GUWAHATI   (India)

Author keywords

[No Author keywords available]

Indexed keywords

AMOXICILLIN PLUS CLAVULANIC ACID; AMPICILLIN; CARBENICILLIN; CEFALEXIN; CEFALORIDINE; CEFALOTIN; CEFOTAXIME; CHLORAMPHENICOL; CIPROFLOXACIN; CLINDAMYCIN; CLOXACILLIN; COTRIMAZINE; ERYTHROMYCIN; GENTAMICIN; GLUCAN; KANAMYCIN; LINCOMYCIN; METICILLIN; NORFLOXACIN; NOVOBIOCIN; OLEANDOMYCIN; OXACILLIN; OXYTETRACYCLINE; PENICILLIN G; RNA 16S; SUCRASE; TETRACYCLINE; TOBRAMYCIN; UNINDEXED DRUG; VANCOMYCIN;

ANTIBIOTIC SENSITIVITY; ARTICLE; BACTERIAL GROWTH; BACTERIUM CULTURE; BACTERIUM IDENTIFICATION; BACTERIUM ISOLATE; CABBAGE; CARBOHYDRATE SYNTHESIS; CATALYSIS; CHEMICAL ANALYSIS; COMPLEX FORMATION; CULTURE MEDIUM; DISK DIFFUSION; ENZYME ACTIVITY; ENZYME ANALYSIS; FERMENTATION; GENE AMPLIFICATION; GENUS; GRAM POSITIVE BACTERIUM; IONIC STRENGTH; LEUCONOSTOC MESENTEROIDES; MICROFLORA; NONHUMAN; NUCLEOTIDE SEQUENCE; PH; PHYLOGENY; PRIORITY JOURNAL; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS; SEQUENCE HOMOLOGY; SPECIES COMPARISON; SPECIES COMPOSITION; STEADY STATE; TEMPERATURE; WEISSELLA CONFUSA;

BACTERIA (MICROORGANISMS); BRASSICA OLERACEA VAR. CAPITATA; POSIBACTERIA; WEISSELLA CONFUSA;

EID: 84859310153     PISSN: 20900406     EISSN: 20900414     Source Type: Journal    
DOI: 10.4061/2011/250842     Document Type: Article

References (44)

1. Katina K., Maina N. H., Juvonen R., Flander L., Johansson L., Virkki L., Tenkanen M., Laitila A., In situ production and analysis of Weissella confusa dextran in wheat sourdough. Food Microbiology 2009 26 7 734 743 2-s2.0-69749097051 10.1016/j.fm.2009.07.008
2. Lee Y., Characterization of Weissella kimchii PL9023 as a potential probiotic for women. FEMS Microbiology Letters 2005 250 1 157 162 2-s2.0-23744473463 10.1016/j.femsle.2005.07.009 (Pubitemid 41138167)
3. Sidebotham R. L., Dextrans. Advances in Carbohydrate Chemistry and Biochemistry 1974 30 371 444 2-s2.0-0016339865
4. Smitinont T., Tansakul C., Tanasupawat S., Keeratipibul S., Navarini L., Bosco M., Cescutti P., Exopolysaccharide-producing lactic acid bacteria strains from traditional thai fermented foods: isolation, identification and exopolysaccharide characterization. International Journal of Food Microbiology 1999 51 2-3 105 111 2-s2.0-0032869158 10.1016/S0168-1605(99)00094-X (Pubitemid 29469673)
5. Patel S., Kasoju N., Bora U., Goyal A., arungoyl@iitg.ernet.in Structural analysis and biomedical applications of dextran produced by a new isolate Pediococcus pentosaceus screened from biodiversity hot spot Assam. Bioresource Technology 2010 101 17 6852 6855 10.1016/j.biortech.2010.03.063
6. Collins M. D., Samelis J., Metaxopoulos J., Wallbanks S., Taxonomic studies on some leuconostoc-like organisms from fermented sausages: description of a new genus Weissella for the Leuconostoc paramesenteroides group of species. Journal of Applied Bacteriology 1993 75 6 595 603 2-s2.0-0027768689 (Pubitemid 24025175)
7. Maina N. H., Tenkanen M., Maaheimo H., Juvonen R., Virkki L., NMR spectroscopic analysis of exopolysaccharides produced by Leuconostoc citreum and Weissella confusa. Carbohydrate Research 2008 343 9 1446 1455 2-s2.0-44449086279 10.1016/j.carres.2008.04.012
8. Villani F., Moschetti G., Blaiotta G., Coppola S., Characterisation of strains of Leuconostoc mesenteroides by analysis of soluble whole-cell protein pattern, DNA fingerprinting and restriction of ribosomal DNA. Journal of Applied Microbiology 1997 82 5 578 588 2-s2.0-0030612322 (Pubitemid 27229598)
9. Samelis J., Rementzis J., Tsakalidou E., Metaxopoulos J., Usefulness of rapid GC analysis of cellular fatty acids for distinguishing Weissella viridescens, Weissella paramesenteroides, Weissella hellenica and some non-identifiable, arginine-negative Weissella strains of meat origin. Systematic and Applied Microbiology 1998 21 2 260 265 2-s2.0-0031824191 (Pubitemid 28379511)
10. Kurzak P., Ehrmann M. A., Vogel R. F., Diversity of lactic acid bacteria associated with ducks. Systematic and Applied Microbiology 1998 21 4 588 592 2-s2.0-0032432259 (Pubitemid 29027341)
11. Ampe F., ben Omar N., Moizan C., Wacher C., Guyot J. P., Polyphasic study of the spatial distribution of microorganisms in Mexican pozol, a fermented maize dough, demonstrates the need for cultivation-independent methods to investigate traditional fermentations. Applied and Environmental Microbiology 1999 65 12 5464 5473 2-s2.0-0041153826 (Pubitemid 129520638)
12. Kurzak P., Ehrmann M. A., Vogel R. F., Diversity of lactic acid bacteria associated with ducks. Systematic and Applied Microbiology 1998 21 4 588 592 2-s2.0-0032432259 (Pubitemid 29027341)
13. De Man J. C., Rogosa M., Sharpe M. E., A medium for the cultivation of lactobacilli. Journal of Applied Bacteriology 1960 23 130 135
14. Goyal A., Katiyar S. S., Regulation of dextransucrase productivity of Leuconostoc mesenteroides NRRL B-512F by the maintenance media. Journal of General and Applied Microbiology 1996 42 1 81 85 2-s2.0-0029864884 (Pubitemid 26115595)
15. Gregersen T., Rapid method for distinction of gram negative from gram positive bacteria. European Journal of Applied Microbiology 1978 5 2 123 127 2-s2.0-0018099415 (Pubitemid 8370239)
16. Goyal A., Nigam M., Katiyar S. S., Optimal conditions for production of dextransucrase from Leuconostoc mesenteroides NRLL B-512F and its properties. Journal of Basic Microbiology 1995 35 6 375 384 2-s2.0-0029188688 (Pubitemid 3012070)
17. Purama R. K., Goyal A., Optimization of conditions of Leuconostoc mesenteroides NRRL b-640 for production of a dextransucrase and its assay. Journal of Food Biochemistry 2009 33 2 218 231 2-s2.0-64149130607 10.1111/j.1745-4514.2009.00219.x
18. Patel S., Goyal A., Isolation, characterization and mutagenesis of exopolysaccharide synthesizing new strains of lactic acid bacteria. Internet Journal of Microbiology 2010 8 1 3 4 2-s2.0-77954227126
19. Santos M., Teixeira J., Rodrigues A., Production of dextransucrase, dextran and fructose from sucrose using Leuconostoc mesenteroides NRRL B512(f). Biochemical Engineering Journal 2000 4 3 177 188 2-s2.0-0033976944 10.1016/S1369-703X(99)00047-9 (Pubitemid 30020217)
20. Majumder A., Bhandari S., Purama R. K., Patel S., Goyal A., Enhanced production of a novel dextran from Leuconostoc mesenteroides NRRL B-640 by response surface methodology. Annals of Microbiology 2009 59 2 309 315 2-s2.0-77951830167 10.1007/BF03178333
21. Kandler O., Weiss N., Sneath P. H. A., Mair N. S., Sharpe M. E., Holt J. G., Genus Lactobacillus beijerinck 1901, 212AL. Bergey's Manual of Systematic Bacteriology 1986 2 Baltimore, Md, USA Williams and Wilkins 1209 1234
22. Barry A. L., Thornsberry C., Lennette E. H., Balows A., Hausler W. J. Jr., Truant J. P., Susceptibility testing: diffusion procedures. Manual of Clinical Microbiology 1980 Washington, DC, USA American Society for Microbiology 463 474
23. Pitcher D. G., Saunders N. A., Owen R. J., Rapid extraction of bacterial genomic DNA with guanidium thiocyanate. Letters in Applied Microbiology 1989 8 4 151 156 2-s2.0-0024553747 (Pubitemid 19126878)
24. Magnusson J., Jonsson H., Schnürer J., Roos S., Weissella soli sp. nov., a lactic acid bacterium isolated from soil. International Journal of Systematic and Evolutionary Microbiology 2002 52 3 831 834 2-s2.0-0035989480 10.1099/ijs.0.02015-0 (Pubitemid 34591208)
25. Choi H. J., Cheigh C. I., Kim S. B., Lee J. C., Lee D. W., Choi S. W., Park J. M., Pyun YU. R., Weissella kimchii sp. nov., a novel lactic acid bacterium from kimchi. International Journal of Systematic and Evolutionary Microbiology 2002 52 2 507 511 2-s2.0-0036201219
26. Tanasupawat S., Shida O., Okada S., Komagata K., Lactobacillus acidipiscis sp. nov. and Weissella thailandensis sp. nov., isolated from fermented fish in Thailand. International Journal of Systematic and Evolutionary Microbiology 2000 50 4 1479 1485 2-s2.0-0033868151 (Pubitemid 30601958)
27. Purama R. K., Agrawal M., Majumder A., Ahmed S., Goyal A., Antibiotic sensitivity, carbohydrate fermentation characteristics, and plasmid profiles of glucansucrase producing four Leuconostoc strains. Journal of Pure and Applied Microbiology 2008 2 1 139 146 2-s2.0-44649153047 (Pubitemid 351771630)
28. Tamura K., Dudley J., Nei M., Kumar S., MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Molecular Biology and Evolution 2007 24 8 1596 1599 2-s2.0-34547781750 10.1093/molbev/msm092 (Pubitemid 47236692)
29. Nelson N., A photometric adaptation of the Somoyogi method for the determination of glucose. The Journal of Biological Chemistry 1944 153 375 380
30. Somogyi M., A new reagent for the determination of sugars. The Journal of Biological Chemistry 1945 160 61 68
31. Tsuchiya H. M., Koepsell H. J., Corman J., Bryant G., Bogard M. O., Feger V. H., Jackson R. W., The effect of certain cultural factors on production of dextransucrase by Leuconostoc mesenteroides. Journal of Bacteriology 1952 64 4 521 526 2-s2.0-0000933909
32. Dubois M., Gilles K. A., Hamilton J. K., Rebers P. A., Smith F., Colorimetric method for determination of sugars and related substances. Analytical Chemistry 1956 28 3 350 356 2-s2.0-33749946901
33. Fox J. D., Robyt J. F., Miniaturization of three carbohydrate analyses using a microsample plate reader. Analytical Biochemistry 1991 195 1 93 96 2-s2.0-0025766291
34. Lowry O. H., Rosebrough N. J., Farr A. L., Randall R. J., Protein measurement with the Folin phenol reagent. The Journal of Biological Chemistry 1951 193 1 265 275 2-s2.0-71849104860
35. Vasileva T., Kirilov A., Bivolarski, V., Bounaix M. S., Gabriel V., Characterisation of glucansucrase activities from Leuconostoc mesenteroides Lm 17 and Ure 13. Biotechnology and Biotechnological Equipment 2009 23 698 701
36. Laemmli U. K., Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature 1970 227 5259 680 685 2-s2.0-0014949207 10.1038/227680a0
37. Patel R., Cockerill F. R., Porayko M. K., Osmon D. R., Ilstrup D. M., Keating M. R., Lactobacillemia in liver transplant patients. Clinical Infectious Diseases 1994 18 2 207 212 2-s2.0-0028047545 (Pubitemid 24055260)
38. Green M., Barbadora K., Michaels M., Recovery of vancomycin-resistant gram-positive cocci from pediatric liver transplant recipients. Journal of Clinical Microbiology 1991 29 11 2503 2506 2-s2.0-0026076813
39. Olano A., Chua J., Schroeder S., Minari A., La Salvia M., Hall G., Weissella confusa (Basonym: Lactobacillus confusus) bacteremia: a case report. Journal of Clinical Microbiology 2001 39 4 1604 1607 2-s2.0-0035059715 10.1128/JCM.39.4.1604-1607.2001 (Pubitemid 32275474)
40. Liu J. Y., Li A. H., Ji C., Yang W. M., First description of a novel Weissella species as an opportunistic pathogen for rainbow trout Oncorhynchus mykiss (Walbaum) in China. Veterinary Microbiology 2009 136 3-4 314 320 2-s2.0-64649106410 10.1016/j.vetmic.2008.11.027
41. Casanellas M., Fernández-Sánchez J., Geometry of the Kimura 3-parameter model. Advances in Applied Mathematics 2008 41 3 265 292 2-s2.0-50549095109 10.1016/j.aam.2007.09.003
42. Saitou N., Nei M., The neighbor-joining method: a new method for reconstructing phylogenetic trees. Molecular Biology and Evolution 1987 4 4 406 425 2-s2.0-0023375195
43. Felsenstein J., Confidence limits on phylogenies: an approach using the bootstrap. Evolution 1985 39 783 791
44. Kimura M., A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. Journal of Molecular Evolution 1980 16 2 111 120 2-s2.0-0019296687 (Pubitemid 11166431)