How to analyse epigenetic marks?

Pediatric Endocrinology Reviews

Volumn 9, Issue SUPPL. 1, 2011, Pages 511-514

  Ammerpohl, Ole ^a   Siebert, Reiner ^a  

^a UNIVERSITY HOSPITAL SCHLESWIG HOLSTEIN   (Germany)

Author keywords

Chromatin; DNA methylation; Epigenetics

Indexed keywords

CYTOSINE; HISTONE;

CHROMATIN; CHROMATIN IMMUNOPRECIPITATION; CONFERENCE PAPER; DNA METHYLATION; DNA SEQUENCE; EPIGENETICS; GENE MUTATION; GENE SEQUENCE; GENETIC ANALYSIS; GENETIC DISORDER; GENETIC MARKER; HISTONE MODIFICATION; HUMAN; BIOLOGICAL MODEL; DISEASES; GENETIC EPIGENESIS; GENETICS; METABOLISM; METHODOLOGY; MOLECULAR DIAGNOSIS; PHYSIOLOGY; PROTEIN PROCESSING; REVIEW;

DISEASE; DNA METHYLATION; EPIGENESIS, GENETIC; GENETIC MARKERS; HISTONES; HUMANS; MODELS, BIOLOGICAL; MOLECULAR DIAGNOSTIC TECHNIQUES; PROTEIN PROCESSING, POST-TRANSLATIONAL; SEQUENCE ANALYSIS, DNA;

EID: 84859250069     PISSN: 15654753     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Conference Paper

References (15)

1. Vickaryous MK, Hall BK. Human cell type diversity, evolution, development, and classification with special reference to cells derived from the neural crest. Biol Rev Camb Philos Soc. 2006;81(3):425-455 (Pubitemid 44092346)
2. Ballestar E. An introduction to epigenetics. Adv Exp Med Biol. 2011;711:1-11
3. Teschendorff AE, Menon U, Gentry-Maharaj A, Ramus SJ, Weisenberger DJ, Shen H, Campan M, Noushmehr H, Bell CG, Maxwell AP, Savage DA, Mueller-Holzner E, Marth C, Kocjan G, Gayther SA, Jones A, Beck S, Wagner W, Laird PW, Jacobs IJ, Widschwendter M. Age-dependent DNA methylation of genes that are suppressed in stem cells is a hallmark of cancer. Genome Res. 2010;20(4):440-446
4. Egger G, Liang G, Aparicio A, Jones PA. Epigenetics in human disease and prospects for epigenetic therapy. Nature 2004;429:457-463 (Pubitemid 38715140)
5. Murr R. Interplay between different epigenetic modifications and mechanisms. Adv Genet 2010;70:101-141
6. Davey CA, Sargent DF, Luger K, Maeder AW, Richmond TJ. Solvent mediated interactions in the structure of the nucleosome core particle at 1.9 a resolution. J Mol Biol. 2002;319(5):1097-1113 (Pubitemid 34729421)
7. Shukla V, Vaissière T, Herceg Z. Histone acetylation and chromatin signature in stem cell identity and cancer. Mutat Res. 2008;637(1-2):1-15 (Pubitemid 350262807)
8. Lister R, Pelizzola M, Dowen RH, Hawkins RD, Hon G, Tonti-Filippini J, Nery JR, Lee L, Ye Z, Ngo QM, Edsall L, Antosiewicz-Bourget J, Stewart R, Ruotti V, Millar AH, Thomson JA, Ren B, Ecker JR. Human DNA methylomes at base resolution show widespread epigenomic differences. Nature 2009;462(7271):315-322
9. Weber M, Schubeler D. Genomic patterns of DNA methylation: targets and function of an epigenetic mark. Curr Opin Cell Biot 2007;19:273-280 (Pubitemid 46899512)
10. Laird PW. Cancer epigenetics. Hum Mol Genet. 2005;14(1):65-76
11. Strahl BD, Allis CD. The language of covalent histone modifications. Nature 2000;403:41-45 (Pubitemid 30038513)
12. Hirasawa R, Feil R. Genomic imprinting and human disease. Essays Biochem. 2010;48(1):187-200
13. Esteller M. Epigenetics in cancer. N Engl J Med. 2008;358(11):1148-1159
14. Das PM, Ramachandran K, vanWert J, Singal R. Chromatin immunoprecipitation assay. Biotechniques 2004;37(6):961-969 (Pubitemid 39612554)
15. Ammerpohl O, Martin-Subero JI, Richter J, Vater I, Siebert R. Hunting for the 5th base: Techniques for analyzing DNA methylation. Biochim BiophysActa. 2009;1790(9):847-862