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Volumn 4, Issue 6, 2012, Pages 693-701

Influence of DNA-dye complex stability on separation resolution in microchip electrophoresis

Author keywords

[No Author keywords available]

Indexed keywords

DNA FRAGMENT; DOUBLE STRANDED DNA; DYE; FLUORESCEIN; POLYACRYLAMIDE GEL; TETRAPENTYLAMMONIUM;

EID: 84859134173     PISSN: 17576180     EISSN: 17576199     Source Type: Journal    
DOI: 10.4155/bio.12.6     Document Type: Article
Times cited : (2)

References (28)
  • 4
    • 0024365698 scopus 로고
    • Chemi-luminescent detection of DNA-application for dna sequencing and hybridization
    • General introduction to labeling methods for nucleic acids
    • Beck S, Okeeffe T, Coull JM, Koster H: Chemi-luminescent detection of DNA-application for dna sequencing and hybridization. Nucleic Acids Res. 17(13), 5115-5123 (1989). General introduction to labeling methods for nucleic acids.
    • (1989) Nucleic Acids Res. , vol.17 , Issue.13 , pp. 5115-5123
    • Beck, S.1    Okeeffe, T.2    Coull, J.M.3    Koster, H.4
  • 6
    • 0023047540 scopus 로고
    • Fluorescence detection in automated DNA-sequence analysis
    • Smith LM, Sanders JZ, Kaiser RJ et al. Fluorescence detection in automated DNA-sequence analysis. Nature 321(6071), 674-679 (1986).
    • (1986) Nature , vol.321 , Issue.6071 , pp. 674-679
    • Smith, L.M.1    Sanders, J.Z.2    Kaiser, R.J.3
  • 7
    • 0025376090 scopus 로고
    • A Stable double-stranded DNA ethidium homodimer complex - Application to picogram fluorescence detection of DNA in agarose gels
    • Glazer AN, Peck K, Mathies RA. A Stable double-stranded DNA ethidium homodimer complex - application to picogram fluorescence detection of DNA in agarose gels. Proc. Natl Acad. Sci. USA 87(10), 3851-3855 (1990).
    • (1990) Proc. Natl Acad. Sci. USA , vol.87 , Issue.10 , pp. 3851-3855
    • Glazer, A.N.1    Peck, K.2    Mathies, R.A.3
  • 8
    • 0026696234 scopus 로고
    • Stable fluorescent complexes of double-stranded DNA with bis-intercalating asymmetric cyanine dyes: Properties and applications
    • Rye HS, Yue S, Wemmer DE et al. Stable fluorescent complexes of double-stranded DNA with bis-intercalating asymmetric cyanine dyes: properties and applications. Nucleic Acids Res. 20(11), 2803-2812 (1992).
    • (1992) Nucleic Acids Res. , vol.20 , Issue.11 , pp. 2803-2812
    • Rye, H.S.1    Yue, S.2    Wemmer, D.E.3
  • 9
    • 79960012622 scopus 로고    scopus 로고
    • Cyanine dyes-nucleic acids interactions
    • Review on interactions between cyanine dyes and nucleic acids
    • Dash S, Panigrahi M, Baliyarsingh S, Behera K, Patel S, Mishra K. Cyanine dyes-nucleic acids interactions. Curr. Organic Chem. 15(15), 2673-2689 (2011). Review on interactions between cyanine dyes and nucleic acids.
    • (2011) Curr. Organic Chem. , vol.15 , Issue.15 , pp. 2673-2689
    • Dash, S.1    Panigrahi, M.2    Baliyarsingh, S.3    Behera, K.4    Patel, S.5    Mishra, K.6
  • 10
    • 85048645035 scopus 로고
    • Structural considerations in interaction of DNA and acridines
    • Lerman LS. Structural considerations in interaction of DNA and acridines. J. Mol. Biol. 3(1), 18-30 (1961).
    • (1961) J. Mol. Biol. , vol.3 , Issue.1 , pp. 18-30
    • Lerman, L.S.1
  • 11
    • 0027129003 scopus 로고
    • Stable dye-DNA intercalation complexes as reagents for high-sensitivity fluorescence detection
    • Glazer AN, Rye HS. Stable dye-DNA intercalation complexes as reagents for high-sensitivity fluorescence detection. Nature 359(6398), 859-861 (1992).
    • (1992) Nature , vol.359 , Issue.6398 , pp. 859-861
    • Glazer, A.N.1    Rye, H.S.2
  • 12
    • 0028473283 scopus 로고
    • High-sensitivity capillary electrophoresis of double-stranded DNA fragments using monomeric and dimeric fluorescent intercalating dyes
    • Zhu HP, Clark SM, Benson SC, Rye HS, Glazer AN, Mathies RA. High-sensitivity capillary electrophoresis of double-stranded DNA fragments using monomeric and dimeric fluorescent intercalating dyes. Anal. Chem. 66(13), 1941-1948 (1994).
    • (1994) Anal. Chem. , vol.66 , Issue.13 , pp. 1941-1948
    • Zhu, H.P.1    Clark, S.M.2    Benson, S.C.3    Rye, H.S.4    Glazer, A.N.5    Mathies, R.A.6
  • 13
    • 0028418171 scopus 로고
    • Separation of nucleic-acids by capillary electrophoresis in cellulose solutions with mono-intercalating and bis-intercalating dyes
    • Kim YS, Morris MD. Separation of nucleic-acids by capillary electrophoresis in cellulose solutions with mono-intercalating and bis-intercalating dyes. Anal. Chem. 66(7), 1168-1174 (1994).
    • (1994) Anal. Chem. , vol.66 , Issue.7 , pp. 1168-1174
    • Kim, Y.S.1    Morris, M.D.2
  • 14
    • 11944261017 scopus 로고
    • Capillary electrophoresis with laser-induced fluorescence detection of pcr fragments using thiazole orange
    • Schwartz HE, Ulfelder KJ. Capillary electrophoresis with laser-induced fluorescence detection of pcr fragments using thiazole orange. Anal. Chem. 64(15), 1737-1740 (1992).
    • (1992) Anal. Chem. , vol.64 , Issue.15 , pp. 1737-1740
    • Schwartz, H.E.1    Ulfelder, K.J.2
  • 15
    • 0001508904 scopus 로고    scopus 로고
    • Multiplex dsDNA fragment sizing using dimeric intercalation dyes and capillary array electrophoresis: Ionic effects on the stability and electrophoretic mobility of DNA-dye complexes
    • Report on the tetrapentylammonium ion resulting in high-resolution capillary electrophoresis separation of dsDNA
    • Clark SM, Mathies RA. Multiplex dsDNA fragment sizing using dimeric intercalation dyes and capillary array electrophoresis: ionic effects on the stability and electrophoretic mobility of DNA-dye complexes. Anal. Chem. 69(7), 1355-1363 (1997). Report on the tetrapentylammonium ion resulting in high-resolution capillary electrophoresis separation of dsDNA.
    • (1997) Anal. Chem. , vol.69 , Issue.7 , pp. 1355-1363
    • Clark, S.M.1    Mathies, R.A.2
  • 16
    • 56549099926 scopus 로고    scopus 로고
    • Microchip DNA electrophoresis with automated whole-gel scanning detection
    • Lo RC, Ugaz VM. Microchip DNA electrophoresis with automated whole-gel scanning detection. Lab Chip 8(12), 2135-2145 (2008).
    • (2008) Lab Chip , vol.8 , Issue.12 , pp. 2135-2145
    • Lo, R.C.1    Ugaz, V.M.2
  • 17
    • 0036672789 scopus 로고    scopus 로고
    • Microdevice-based measurements of diffusion and dispersion in cross-linked and linear polyacrylamide DNA sequencing gels
    • Ugaz VM, Burke DT, Burns MA. Microdevice-based measurements of diffusion and dispersion in cross-linked and linear polyacrylamide DNA sequencing gels. Electrophoresis 23(16), 2777-2787 (2002).
    • (2002) Electrophoresis , vol.23 , Issue.16 , pp. 2777-2787
    • Ugaz, V.M.1    Burke, D.T.2    Burns, M.A.3
  • 18
    • 32244433860 scopus 로고    scopus 로고
    • Separation performance of single-stranded DNA electrophoresis in photopolymerized cross-linked polyacrylamide gels
    • Lo RC, Ugaz VM. Separation performance of single-stranded DNA electrophoresis in photopolymerized cross-linked polyacrylamide gels. Electrophoresis 27(2), 373-386 (2006).
    • (2006) Electrophoresis , vol.27 , Issue.2 , pp. 373-386
    • Lo, R.C.1    Ugaz, V.M.2
  • 19
    • 0000990701 scopus 로고
    • Analysis of resolution in DNA sequencing by capillary gel-electrophoresis
    • Luckey J, Norris T, Smith L: Analysis of resolution in DNA sequencing by capillary gel-electrophoresis. J. Phys. Chem. 97(12), 3067-3075 (1993).
    • (1993) J. Phys. Chem. , vol.97 , Issue.12 , pp. 3067-3075
    • Luckey, J.1    Norris, T.2    Smith, L.3
  • 20
    • 0035038108 scopus 로고    scopus 로고
    • Mobility, diffusion and dispersion of single-stranded DNA in sequencing gels
    • Brahmasandra SN, Burke DT, Mastrangelo CH, Burns MA. Mobility, diffusion and dispersion of single-stranded DNA in sequencing gels. Electrophoresis 22(6), 1046-1062 (2001).
    • (2001) Electrophoresis , vol.22 , Issue.6 , pp. 1046-1062
    • Brahmasandra, S.N.1    Burke, D.T.2    Mastrangelo, C.H.3    Burns, M.A.4
  • 21
    • 4344676203 scopus 로고    scopus 로고
    • Capillary electrophoresis sequencing of small ssDNA molecules versus the Ogston regime: Fitting data and interpreting parameters
    • Kopecka K, Drouin G, Slater GW. Capillary electrophoresis sequencing of small ssDNA molecules versus the Ogston regime: fitting data and interpreting parameters. Electrophoresis 25(14), 2177-2185 (2004).
    • (2004) Electrophoresis , vol.25 , Issue.14 , pp. 2177-2185
    • Kopecka, K.1    Drouin, G.2    Slater, G.W.3
  • 22
    • 0034857907 scopus 로고    scopus 로고
    • An exactly solvable Ogston model of gel electrophoresis: VIII. Nonconducting gel fibers, curved field lines, and the Nernst-Einstein relation
    • Mercier JF, Tessier F, Slater GW. An exactly solvable Ogston model of gel electrophoresis: VIII. Nonconducting gel fibers, curved field lines, and the Nernst-Einstein relation. Electrophoresis 22(13), 2631-2638 (2001).
    • (2001) Electrophoresis , vol.22 , Issue.13 , pp. 2631-2638
    • Mercier, J.F.1    Tessier, F.2    Slater, G.W.3
  • 23
    • 0027974683 scopus 로고
    • Effects of DNA charge and length on the electrophoretic mobility of intercalated DNA
    • Reese HR. Effects of DNA charge and length on the electrophoretic mobility of intercalated DNA. Biopolymers 34(10), 1349-1358 (1994).
    • (1994) Biopolymers , vol.34 , Issue.10 , pp. 1349-1358
    • Reese, H.R.1
  • 24
    • 0031260594 scopus 로고    scopus 로고
    • Improved stability and electrophoretic properties of preformed fluorescent cationic dye-DNA complexes in a Taps-tetrapentylammonium buffer in agarose slab gels
    • Zeng ZX, Clark SM, Mathies RA, Glazer AN. Improved stability and electrophoretic properties of preformed fluorescent cationic dye-DNA complexes in a Taps-tetrapentylammonium buffer in agarose slab gels. Anal. Biochem. 252(1), 110-114 (1997).
    • (1997) Anal. Biochem. , vol.252 , Issue.1 , pp. 110-114
    • Zeng, Z.X.1    Clark, S.M.2    Mathies, R.A.3    Glazer, A.N.4
  • 25
    • 0036672769 scopus 로고    scopus 로고
    • Determining the electrophoretic mobility and translational diffusion coefficients of DNA molecules in free solution
    • Stellwagen E, Stellwagen N. Determining the electrophoretic mobility and translational diffusion coefficients of DNA molecules in free solution. Electrophoresis 23(16), 2794-2803 (2002).
    • (2002) Electrophoresis , vol.23 , Issue.16 , pp. 2794-2803
    • Stellwagen, E.1    Stellwagen, N.2
  • 26
    • 0027398084 scopus 로고
    • Theory of band broadening for DNA gel-electrophoresis and sequencing
    • Slater GW. Theory of band broadening for DNA gel-electrophoresis and sequencing. Electrophoresis 14(1-2), 1-7 (1993).
    • (1993) Electrophoresis , vol.14 , Issue.1-2 , pp. 1-7
    • Slater, G.W.1
  • 27
    • 0034335665 scopus 로고    scopus 로고
    • Electrophoresis of DNA and other polyelectrolytes: Physical mechanisms
    • Viovy JL. Electrophoresis of DNA and other polyelectrolytes: physical mechanisms. Rev. Mod. Phys. 72(3), 813-872 (2000).
    • (2000) Rev. Mod. Phys. , vol.72 , Issue.3 , pp. 813-872
    • Viovy, J.L.1
  • 28
    • 0037310820 scopus 로고    scopus 로고
    • The theory of DNA separation by capillary electrophoresis
    • Theory of the physics of DNA gel electrophoresis
    • Slater GW, Kenward M, Mccormick LC, Gauthier MG. The theory of DNA separation by capillary electrophoresis. Curr. Opin. Biotech. 14(1), 58-64 (2003). Theory of the physics of DNA gel electrophoresis.
    • (2003) Curr. Opin. Biotech. , vol.14 , Issue.1 , pp. 58-64
    • Slater, G.W.1    Kenward, M.2    Mccormick, L.C.3    Gauthier, M.G.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.