Diffusion properties of single F oF 1-ATP synthases in a living bacterium unraveled by localization microscopy

Progress in Biomedical Optics and Imaging - Proceedings of SPIE

Volumn 8225, Issue , 2012, Pages

  Renz, Marc ^a,b   Rendler, Torsten ^a   Börsch, Michael ^a,b  

^a UNIVERSITY OF STUTTGART   (Germany)

^b JENA UNIVERSITY HOSPITAL   (Germany)

Author keywords

diffusion coefficient; Escherichia coli; F oF 1 ATP synthase; single particle tracking; supercomplex

Indexed keywords

ATP SYNTHASE; BACTERIAL MEMBRANES; BACTERIAL PLASMA MEMBRANE; DIFFUSION MEASUREMENTS; DIFFUSION PROPERTIES; E. COLI; ESCHERICHIA COLI (E. COLI); INNER MEMBRANES; MEAN SQUARE DISPLACEMENT; MEMBRANE CURVATURE; MEMBRANE ENZYMES; MEMBRANE-BOUND ENZYMES; MONOMERIC ENZYMES; OBSERVATION AREA; OBSERVATION WINDOW; PROTON PUMP; SINGLE PARTICLE TRACKING; SUPERCOMPLEX; SURFACE COORDINATES; SYNTHASES;

ADENOSINETRIPHOSPHATE; BACTERIA; BIOMOLECULES; CELL MEMBRANES; CYTOLOGY; DIFFUSION; ELECTRIC POTENTIAL; ENZYMES; ESCHERICHIA COLI; HISTOLOGY; TISSUE;

MEMBRANES;

EID: 84859085008     PISSN: 16057422     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1117/12.907089     Document Type: Conference Paper

References (36)

1. Mitchell, P., "Coupling of phosphorylation to electron and hydrogen transfer by a chemi-osmotic type of mechanism", Nature 191, 144-148 (1961).
2. Lenaz, G., and Genova, M.L., "Kinetics of integrated electron transfer in the mitochondrial respiratory chain: random collisions vs. solid state electron channeling", Am J Physiol Cell Physiol 292, C1221-1239 (2007).
3. Wittig, I., and Schagger, H., "Supramolecular organization of ATP synthase and respiratory chain in mitochondrial membranes", Biochim Biophys Acta 1787, 672-680 (2009).
4. Davies, K.M., Strauss, M., Daum, B., Kief, J.H., Osiewacz, H.D., Rycovska, A., Zickermann, V., and Kuhlbrandt, W., "Macromolecular organization of ATP synthase and complex I in whole mitochondria", Proc Natl Acad Sci U S A 108, 14121-14126 (2011).
5. Dudkina, N.V., Oostergetel, G.T., Lewejohann, D., Braun, H.P., and Boekema, E.J., "Row-like organization of ATP synthase in intact mitochondria determined by cryo-electron tomography", Biochim Biophys Acta 1797, 272-277 (2010).
6. Schagger, H., and Pfeiffer, K., "Supercomplexes inthe respiratory chains of yeast and mammalian mitochondria", Embo J 19, 1777-1783 (2000).
7. Cruciat, C.M., Brunner, S., Baumann, F., Neupert, W., and Stuart, R.A., "The cytochrome bc1 and cytochrome c oxidase complexes associate to form a single supracomplex in yeast mitochondria", J Biol Chem 275, 18093-18098 (2000).
8. Lenn, T., Leake, M.C., and Mullineaux, C.W., "Are Escherichia coli OXPHOS complexes concentrated in specialized zones within the plasma membrane?" Biochem Soc Trans 36, 1032-1036 (2008).
9. Singer, S.J., and Nicolson, G.L., "The fluid mosaic model of the structure of cell membranes", Science 175, 720-731 (1972).
10. Matsumoto, K., Kusaka, J., Nishibori, A., and Hara, H., "Lipid domains inbacterial membranes", Mol Microbiol 61, 1110-1117 (2006).
11. Axelrod, D., Koppel, D.E., Schlessinger, J., Elson, E., and Webb, W.W., "Mobility measurement byanalysis of fluorescence photobleaching recovery kinetics", Biophys J 16, 1055-1069 (1976).
12. Sheetz, M.P., Turney, S., Qian, H., and Elson, E.L., "Nanometre- level analysis demonstrates that lipid flow does not drive membrane glycoprotein movements", Nature 340, 284-288 (1989).
13. de Brabander, M., Nuydens, R., Ishihara, A., Holifield, B., Jacobson, K., and Geerts, H., "Lateral diffusion and retrograde movements of individual cell surface components on single motile cells observed with Nanovid microscopy", J Cell Biol 112, 111-124 (1991).
14. Kucik, D.F., Elson, E.L., and Sheetz, M.P., "Weak dependence of mobility of membrane protein aggregates on aggregate size supports a viscous model of retardation of diffusion", Biophys J 76, 314-322 (1999).
15. Iino, R., Koyama, I., and Kusumi, A., "Single molecule imaging of green fluorescent proteins in living cells: Ecadherin forms oligomers on the free cell surface", Biophys J 80, 2667-2677 (2001).
16. Nenninger, A., Mastroianni, G., and Mullineaux, C.W., "Size dependence of protein diffusion in the cytoplasm of Escherichia coli", J Bacteriol 192, 4535-4540.
17. Duser, M.G., Zarrabi, N., Bi, Y., Zimmermann, B., Dunn, S.D., and Borsch, M., "3D-localization of the a-subunit in FoF1-ATP synthase by time resolved single-molecule FRET", Proc. SPIE 6092, 60920H (2006).
18. Duser, M.G., Bi, Y., Zarrabi, N., Dunn, S.D., and Borsch, M., "The proton-translocating asubunit of F0F1-ATP synthase is allocated asymmetrically to the peripheral stalk", J Biol Chem 283, 33602-33610 (2008).
19. Duser, M.G., Zarrabi, N., Cipriano, D.J., Ernst, S., Glick, G.D., Dunn, S.D., and Borsch, M., "36 degrees step size of proton-driven c-ring rotation in FoF1-ATP synthase", Embo J 28, 2689-2696 (2009).
20. Seyfert, K., Oosaka, T., Yaginuma, H., Ernst, S., Noji, H., Iino, R., and Borsch, M., "Subunit rotation in asingle F[sub o]F[sub 1]-ATP synthase in a living bacterium monitored by FRET", Proc. SPIE 7905, 79050K (2011).
21. Heitkamp, T., Kalinowski, R., Bottcher, B., Borsch, M., Altendorf, K., and Greie, J.C., "K(+)-Translocating KdpFABC P-Type ATPase from Escherichia coli Acts as a Functional and Structural Dimer", Biochemistry 47, 3564-3575 (2008).
22. Alemdaroglu, F.E., Alexander, S.C., Ji, D.M., Prusty, D.K., Borsch, M., and Herrmann, A., "Poly(BODIPY)s: ANew Class of Tunable Polymeric Dyes", Macromolecules 42, 6529-6536 (2009).
23. Verhalen, B., Ernst, S., Borsch, M., and Wilkens, S., "Dynamic Ligand-induced Conformational Rearrangements in P-glycoprotein as Probed by Fluorescence Resonance Energy Transfer Spectroscopy", J Biol Chem 287, 1112-1127 (2012).
24. Ernst, S., Schonbauer, A.K., Bar, G., Borsch, M., and Kuhn, A., "YidC-driven membrane insertion of single fluorescent Pf3 coat proteins", J Mol Biol 412, 165-175 (2011).
25. Diepholz, M., Borsch, M., and Bottcher, B., "Structural organization of the V-ATPase and its implications for regulatory assembly and disassembly", Biochem Soc Trans 36, 1027-1031 (2008).
26. Winnewisser, C., Schneider, J., Borsch, M., and Rotter, H.W., "In situ temperature measurements via ruby R lines of sapphire substrate based InGaN light emitting diodes during operation", Journal of Applied Physics 89, 3091- 3094 (2001).
27. Dickson, R.M., Cubitt, A.B., Tsien, R.Y., and Moerner, W.E., "On/off blinking and switching behaviour of single molecules of green fluorescent protein", Nature 388, 355-358 (1997).
28. Ernst, S., Düser, M.G., Zarrabi, N., and Börsch, M., "Three-color Förster resonance energy transfer within single FOF1-ATP synthases: monitoring elastic deformations of the rotary double motor in real time", J Biomed Opt, in press (2012).
29. Zarrabi, N., Ernst, S., Duser, M.G., Golovina-Leiker, A., Becker, W., Erdmann, R., Dunn, S.D., and Borsch, M., "Simultaneous monitoring of the two coupled motors of a single FoF1-ATP synthase by three-color FRET using duty cycle-optimized triple-ALEX", Proc. SPIE 7185, 718505 (2009).
30. Taniguchi, Y., Choi, P.J., Li, G.W., Chen, H.Y., Babu, M., Hearn, J., Emili, A., and Xie, X.S., "Quantifying E-coli Proteome and Transcriptome with Single-Molecule Sensitivity in Single Cells", Science 329, 533-538 (2010).
31. Leake, M.C., Greene, N.P., Godun, R.M., Granjon, T., Buchanan, G., Chen, S., Berry, R.M., Palmer, T., and Berks, B.C., "Variable stoichiometry of the TatA component of the twin-arginine protein transport system observed by in vivo single-molecule imaging", Proc Natl Acad Sci U S A 105, 15376-15381 (2008).
32. Mortensen, K.I., Churchman, L.S., Spudich, J.A., and Flyvbjerg, H., "Optimized localization analysis for singlemolecule tracking and super-resolution microscopy", Nat Methods 7, 377-381 (2010).
33. Giuggioli, L., Abramson, G., Kenkre, V.M., Suzan, G., Marce, E., and Yates, T.L., "Diffusion and home range parameters from rodent population measurements in Panama", Bull Math Biol 67, 1135-1149 (2005).
34. Mullineaux, C.W., Nenninger, A., Ray, N., and Robinson, C., "Diffusion of green fluorescent protein in three cell environments in Escherichia coli", J Bacteriol 188, 3442-3448 (2006).
35. Lenn, T., Leake, M.C., and Mullineaux, C.W., "Clustering and dynamics of cytochrome bd-I complexes in the Escherichia coli plasma membrane in vivo", Mol Microbiol 70, 1397-1407 (2008).
36. Johnson, A.S., van Horck, S., and Lewis, P.J., "Dynamic localization of membrane proteins in Bacillus subtilis", Microbiology 150, 2815-2824 (2004).