Self-Organization in Biological Systems

Biology Bulletin

Volumn 39, Issue 2, 2012, Pages 110-118

  Isaeva, V V ^a,b  

^a SEVERTSOV INSTITUTE OF ECOLOGY AND EVOLUTION   (Russian Federation)

^b INSTITUTE OF BIOLOGY AND SOIL SCIENCE   (Russian Federation)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 84858983779     PISSN: 10623590     EISSN: None     Source Type: Journal    
DOI: 10.1134/S1062359012020069     Document Type: Article

References (79)

1. Abercrombie, M., The Crawling Movement of Metazoan Cells, Proc. Royal Soc. (L.), 1980, vol. 207, pp. 129-147.
2. Albrecht-Buehler, G., Is Cytoplasm Intelligent Too?, in Cell and Muscle Motility, Shay, J. W., Ed., New York: Plenum Press, 1985, vol. 6, pp. 1-21.
3. Albrecht-Buehler, G., In Defense of "Non-Molecular" Cell Biology, Int. Rev. Cytol., 1990, vol. 120, pp. 191-241.
4. Arnold, V. I., Teoriya katastrof (The Theory of Catastrophs), Moscow: Nauka, 2000.
5. Ball, Ph., Nature' Patterns: A Tapestry in Three Parts, Oxford: Oxf. Univ. Press, 2009.
6. Beklemishev, V. N., Metodologiya sistematiki (The Methodology of Systematics), Moscow: Tov. Nauch. Izd. KMK, 1994.
7. Belousov, L. V., Osnovy obshchei embriologii (The Fundamentals of General Embryology), Moscow: Izd. Mosk. Gos. Univ., 2005.
8. Ben-Jacob, E., Bacterial Wisdom, Physica A (Amsterdam), 1998, vol. 249, pp. 553-577.
9. Ben-Tabou de-Leon, S. and Davidson, E. H., Gene Regulation: Gene Control Network in Development, Ann. Rev. Biophys. Biomol. Struct., 2007, vol. 36, pp. 191-212.
10. Berdnikov, V. A., Selection on the Rate of Evolution as One of the Factors that Determine the Structure of Metazoans, Ekol. Genet., 2003, vol. 1, pp. 59-66.
11. Bird, R. J., Chaos and Life. Complexity and Order in Evolution and Thought, New York: Columbia Univ. Press, 2003.
12. Blobel, G., Control of Intracellular Protein Traffic, Methods Enzymol., 1983, vol. 96, pp. 663-682.
13. Bub, G., Shrier, A., and Glass, L., Global Organization of Dynamics in Oscillatory Heterogeneous Excitable Media, Phys. Rev., 2005, vol. 94, pp. 028105-1-028105-4.
14. Buss, L. W., The Evolution of Individuality, Princeton: Princet. Univ. Press, 1987.
15. Camazine, S., Deneubourg, J. L., Franks, N. R., et al., Self-Organization in Biological Systems, Princeton: Princet. Univ. Press, 2001.
16. Claverie, J.-M., What if there Are Only 30000 Human Genes?, Science, 2001, vol. 291, pp. 1255-1257.
17. D'Arcy Thompson, W., On Growth and Form, Cambridge: Camb. Univ. Press, 1942.
18. Dartsch, P. C. and Hämmerle, H., Orientation of Arterial Smooth Muscle Cells to Mechanical Stimulation, Eur. J. Cell Biol., 1986, vol. 41, pp. 339-346.
19. Davidson, E. H., The Regulatory Genome: Gene Regulatory Networks in Development and Evolution, San Diego: Academic Press, 2006.
20. Deisboeck, T. S. and Couzin, I. D., Collective Behavior in Cancer Cell Populations, BioEssays, 2009, vol. 31, pp. 190-197.
21. Desprat, N., Supatto, W., Pouille, P.-A., et al., Tissue Deformation Modulates twist Expression to Determine Anterior Midgut Differentiation in Drosophila Embryos, Dev. Cell, 2008, vol. 15, pp. 470-477.
22. Dormann, D., Vasiev, B., and Weijer, C. J., The Control of Chemotactic Cell Movement during Dictyostelium Morphogenesis, Philos. Trans. Roy. Soc. (L.) B, 2011, vol. 355, pp. 983-991.
23. Edelman, G. M., Neural Darwinism: Selection and Reentrant Signaling in Higher Brain Function, Neuron, 1993, vol. 10, pp. 115-125.
24. Elsdale, T., Generation and Maintenance of Parallel Arrays in Cultures of Diploid Fibroblasts, in Biology of Fibroblasts, Kulonen, E. and Pikkarainen, J., Eds., New York: Acad. Press, 1973, pp. 41-58.
25. Erwin, D. H. and Davidson, E. H., The Evolution of Hierarchical Gene Regulatory Networks, Nature Rev. Genet., 2009, vol. 10, pp. 141-148.
26. Ewen-Kampen, B., Schwager, E. E., and Extavour, C. G. M., The Molecular Machinery of Germ Line Specification, Mol. Reprod. Dev., 2010, vol. 77, pp. 3-18.
27. Farge, E., Mechanical Induction of Twist in the Drosophila Foregut/Stomodeal Primordium, Curr. Biol., 2003, vol. 13, pp. 1365-1377.
28. Giudice, G., Restitution of Whole Larvae from Disaggregated Cells of Sea Urchin Embryo, Dev. Biol., 1962, vol. 5, pp. 402-411.
29. Glass, L., Multistable Spatiotemporal Patterns of Cardiac Activity, Proc. Natl. Acad. Sci. USA, 2005, vol. 102, pp. 10409-10410.
30. Goldberger, A. L., Complex Systems. Giles F. Filley Lecture, Proc. Amer. Thorac. Soc., 2006, vol. 3, pp. 467-471.
31. Gould, S. J., The Structure of Evolutionary Theory, Cambridge, Massachusetts; London: Belknap Press, Harvard Univ. Press, 2002.
32. Hall, B. K., The Neural Crest as a Fourth Germ Layer and Vertebrates a Quadroblastic not Triploblastic, Evol. Dev., 2000, vol. 2, pp. 3-5.
33. Haken, G., Sinergetika (Synergetics), Moscow: Mir, 1980.
34. Hess, B. and Mikhailov, A., Self-Organization in Living Cells, Science, 1994, vol. 264, pp. 223-224.
35. Hinegardner, R. T., Morphology and Genetics of Sea Urchin Development, Am. Zool., 1975, vol. 15, pp. 679-689.
36. Ingber, D. E., Mechanical Control of Tissue Growth: Function Follows Form, Proc. Nat. Acad. Sci. USA, 2005, vol. 102, pp. 11571-11572.
37. Inge-Vechtomov, S. G., Template Principle in Biology (Past, Present, Future?), Ekol. Genetika, 2003, vol. 1, pp. 6-15.
38. Isaeva, V. V., Kasyanov, N. V., and Presnov, E. V., Analysis Situs of Spatial-Temporal Architecture in Biological Morphogenesis, in Progress in Mathematical Biology Research, Kelly, J. T., Ed., New York: Nova Sci. Publ., 2008, pp. 141-189.
39. Isaeva, V. V., Kletki v morfogeneze (Cells in Morphogenesis), Moscow: Nauka, 1994.
40. Isaeva, V. V., Sinergetika dlya biologov: vvodnyi kurs (Synergetics for Biologists: An Introductory Course), Moscow: Nauka, 2005.
41. Isaeva, V. V., Fractal and Chaotic Patterns of Animals, in Tr. Zool. Inst. Ros. Akad. Nauk, Prilozh. 1 (Transactions of the Zoological Institute, Russian Academy of Sciences, Suppl. 1), St. Petersburg: Zool. Inst., 2009, pp. 199-218.
42. Isaeva, V. V., The Diversity of Ontogeny in Animals with Asexual Reproduction and Plasticity of Early Development, Russ. J. Dev. Biol., 2010, vol. 41, no. 5, pp. 291-301.
43. Johnson, B. R. and Lam, S. K., Self-Organization, Natural Selection, and Evolution: Cellular Hardware and Genetic Software, BioScience, 2010, vol. 60, pp. 879-885.
44. Kauffman, S. A., Autocatalitic Sets of Proteins, J. Theor. Biol., 1986, vol. 119, pp. 1-24.
45. Kauffman, S. A., The Origins of Order. Self-Organization and Selection in Evolution, New York: Oxford Univ. Press, 1993.
46. Kirschner, M. W. and Gerhart, J. C., The Plausibility of Life, New Haven: Yale Univ. Press., 2005.
47. Leatherman, J. L. and Jongens, T. A., Transcriptional Silencing and Translational Control: Key Features of Early Germline Development, BioEssays, 2003, vol. 25, pp. 326-335.
48. Metzger, R. J. and Krasnow, M. A., Genetic Control of Branching Morphogenesis, Science, 1999, vol. 84, pp. 1635-1639.
49. Millonig, G., Blastomere Reagregation, in The Sea Urchin Embryo, Czihak, G., Ed., Berlin: Springer Verlag, 1975, pp. 407-423.
50. Mirollo, R. E. and Strogatz, S. H., Synchronization of Pulse-Coupled Biological Oscillators, J. Appl. Math., 1990, vol. 50, no. 6, pp. 1645-1662.
51. Misteli, T., The Concept of Self-Organization in Cellular Architecture, J. Cell Biol., 2001, vol. 155, pp. 181-185.
52. Nicolis, G. and Prigogine, I., Samoorganizatsiya v neravnovesnykh sistemakh (Self-Organization in Nonequilibrium Systems), Moscow: Mir, 1979.
53. Nuccitelli, R., The Involvement of Transcellular Ion Currents and Electric Fields in Pattern Formation, in Pattern Formation: A Primer in Developmental Biology, Malacinski, G. M. and Bryant, S. V., Eds., London: Macmillan Publ. Co., 1984, pp. 23-46.
54. Parrish, J. K. and Edelstein-Keshet, L., Complexity, Pattern, and Evolutionary Trade-Off in Animal Aggregation, Science, 1999, vol. 284, pp. 99-101.
55. Parrish, J. K., Viscido, S. V., and Grünbaum, D., Self-Organized Fish Schools: An Examination of Emergent Properties, Biol. Bull., 2002, vol. 202, pp. 296-305.
56. Penrose, R., The Topology of Ridge Systems, Ann. Hum. Genet. (L.), 1979, vol. 42, pp. 435-444.
57. Peter, I. S. and Davidson, E. H., Evolution of Gene Regulatory Networks Controlling Body Plan Development, Cell, 2011, vol. 144, pp. 970-985.
58. Pinot, M., Chesnel, F., Kubiak, J. Z., et al., Effects of Confinement on the Self-Organization of Microtubules and Motors, Curr. Biol., 2009, vol. 19, pp. 954-960.
59. Presnov, E., Isaeva, V., and Kasyanov, N., Topological Determination of Early Morphogenesis in Metazoa, Theor. Biosci., 2010, vol. 129, pp. 259-270.
60. Prigogine, I. and Stengers, I., Poryadok iz khaosa (Order from Chaos), Moscow: Progress, 1986.
61. Raven, H., Oogenez: nakoplenie biologicheskoi informatsii (Oogenesis: Accumulation of Biological Information), Moscow: Mir, 1964.
62. Samoilov, V. I. and Vasil'ev, Yu. M., Mechanisms of Social Behavior of Tissue Cells of Vertebrates: Cultural Models, Zh. Obshch. Biol., 2009, vol. 70, pp. 239-244.
63. Savel'ev, S. V., Sravnitel'naya anatomiya nervnoi sistemy pozvonochnykh (Comparative Anatomy of the Nervous System of Vertebrates), Moscow: GEOTAR-MED, 2001.
64. Spiegel, E. and Spiegel, M., Cell-Cell Interactions during Sea Urchin Morphogenesis, in Developmental Biology: A Comprehensive Synthesis, New York: Plenum Press, 1986.
65. Taboni, J., Self-Organization and Other Emergent Properties in a Simple Biological System of Microtubules, Complexus, 2006, vol. 3, pp. 200-210.
66. Tamura, M., Dan-Sohkawa, M., and Kaneko, H., Coelomic Pouch Formation in Reconstructing Embryos of the Starfish Asterina pectinifera, Dev. Growth Differ., 1998, vol. 40, pp. 567-575.
67. Thom, R., Comments, in Na puti k teoreticheskoi biologii. I. Prolegomeny (Towards a Theoretical Biology. I. Prolegomena), Astaurov, B. L., Ed., Moscow: Mir, 1970(a), pp. 38-46.
68. Thom, R., Dynamic Theory of Morphogenesis, in Towards a Theoretical Biology. I. Prolegomena, Astaurov, B. L., Ed., Moscow: Mir, 1970(b), pp. 145-156.
69. Thom, R., Strukturnaya ustoichivost' i morfogenez (Structural Stability and Morphogenesis), Moscow: Logos, 2002.
70. Tononi, G. and Edelman, G. M., Consciousness and Complexity, Science, 1998, vol. 282, pp. 1846-1850.
71. Uzbekov, R. E. and Alieva, I. B., Centrosome: A Mystery of the "Cell Processor", Tsitologiya, 2008, vol. 50, no. 2, pp. 91-112.
72. Vasil'ev, Yu. M., Social Behavior of Normal Cells and Antisocial Behavior of Tumor Cells, Soros. Obrazovat. Zh., 1997, no. 5, pp. 20-25.
73. Vasil'ev, Yu. M. and Gel'fand, I. M., Searching Migrations of Cells in Normal Development and in Carcinogenesis, Biochemisty (Moscow), 2006, vol. 71, no. 8, pp. 1030-1020.
74. Vasil'ev, Yu. M., Reorganization of Cytoskeleton as a Basis of Morphogenesis, Russ. J. Dev. Biol., 2007, vol. 38, no. 2, pp. 90-94.
75. Ventegodt, S., Hermansen, T. D., Flensborg-Madsen, T., et al., Human Development IV: The Living Cell Has Information-Directed Self-Organization, Sci. World J., 2006, vol. 6, pp. 1132-1138.
76. Venter, J. C., Adams, M. D., Myers, E. W., et al., The Sequence of the Human Genome, Science, 2001, vol. 291, pp. 1304-1351.
77. Warburton, D., Schwarz, M., Tefft, D., et al., The Molecular Basis of Lung Morphogenesis, Mech. Dev., 2000, vol. 92, pp. 55-81.
78. Weiss, P., Cell Contact, Int. Rev. Cytol., 1958, vol. 7, pp. 391-423.
79. Wilson, H. W., On Some Phenomena of Coalescence and Regeneration in Sponges, J. Exp. Zool., 1907, vol. 5, pp. 250-252.