-
1
-
-
0025183708
-
Basic local alignment search tool
-
Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ. (1990). Basic local alignment search tool. J Mol Biol 215: 403-410.
-
(1990)
J Mol Biol
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
2
-
-
0036682224
-
PRIMROSE: A computer program for generating and estimating the phylogenetic range of 16S rRNA oligonucleotide probes and primers in conjunction with the RDP-II database
-
Ashelford KE, Weightman AJ, Fry JC. (2002). PRIMROSE: a computer program for generating and estimating the phylogenetic range of 16S rRNA oligonucleotide probes and primers in conjunction with the RDP-II database. Nucleic Acids Res 30: 3481-3489. (Pubitemid 34845945)
-
(2002)
Nucleic Acids Research
, vol.30
, Issue.15
, pp. 3481-3489
-
-
Ashelford, K.E.1
Weightman, A.J.2
Fry, J.C.3
-
3
-
-
78751614479
-
Distribution analysis of hydrogenases in surface waters of marine and freshwater environments
-
Barz M, Beimgraben C, Staller T, Germer F, Opitz F, Marquardt C et al. (2010). Distribution analysis of hydrogenases in surface waters of marine and freshwater environments. PLoS ONE 5: e13846.
-
(2010)
PLoS ONE
, vol.5
-
-
Barz, M.1
Beimgraben, C.2
Staller, T.3
Germer, F.4
Opitz, F.5
Marquardt, C.6
-
4
-
-
0027336566
-
Identification of the sources of energy for nitrogen fixation and physiological characterization of nitrogen-fixing members of a marine microbial mat community
-
Bebout BM, Fitzpatrick MW, Paerl HW. (1993). Identification of the sources of energy for nitrogen fixation and physiological characterization of nitrogen-fixing members of a marine microbial mat community. Appl Environ Microbiol 59: 1495-1503. (Pubitemid 23141161)
-
(1993)
Applied and Environmental Microbiology
, vol.59
, Issue.5
, pp. 1495-1503
-
-
Bebout, B.M.1
Fitzpatrick, M.W.2
Paerl, H.W.3
-
5
-
-
2942531099
-
Microbial mats for multiple applications in aquaculture and bioremediation
-
DOI 10.1016/j.biortech.2003.12.016, PII S0960852404000070
-
Bender J, Phillips P. (2004). Microbial mats for multiple applications in aquaculture and bioremediation. Bioresour Technol 94: 229-238. (Pubitemid 38739179)
-
(2004)
Bioresource Technology
, vol.94
, Issue.3
, pp. 229-238
-
-
Bender, J.1
Phillips, P.2
-
6
-
-
73449136317
-
Horizontal transfer of the nitrogen fixation gene cluster in the cyanobacterium Microcoleus chthonoplastes
-
Bolhuis H, Severin I, Confurius-Guns V, Wollenzien UI, Stal LJ. (2010). Horizontal transfer of the nitrogen fixation gene cluster in the cyanobacterium Microcoleus chthonoplastes. ISME J 4: 121-130.
-
(2010)
ISME J
, vol.4
, pp. 121-130
-
-
Bolhuis, H.1
Severin, I.2
Confurius-Guns, V.3
Wollenzien, U.I.4
Stal, L.J.5
-
7
-
-
80054738596
-
Analysis of bacterial and archaeal diversity in coastal microbial mats using massive parallel 16S rRNA gene tag sequencing
-
e-pub ahead of print 5 May 2011; doi:10.1038/ ismej.2011.52
-
Bolhuis H, Stal LJ. (2011). Analysis of bacterial and archaeal diversity in coastal microbial mats using massive parallel 16S rRNA gene tag sequencing. ISME J; e-pub ahead of print 5 May 2011; doi:10.1038/ ismej.2011.52.
-
(2011)
ISME J
-
-
Bolhuis, H.1
Stal, L.J.2
-
9
-
-
78649448514
-
[FeFe]-hydrogenase in yellowstone national park: Evidence for dispersal limitation and phylogenetic niche conservatism
-
Boyd ES, Hamilton TL, Spear JR, Lavin M, Peters JW. (2010). [FeFe]-hydrogenase in yellowstone national park: evidence for dispersal limitation and phylogenetic niche conservatism. ISME J 4: 1485-1495.
-
(2010)
ISME J
, vol.4
, pp. 1485-1495
-
-
Boyd, E.S.1
Hamilton, T.L.2
Spear, J.R.3
Lavin, M.4
Peters, J.W.5
-
10
-
-
67649621650
-
[FeFe] hydrogenase genetic diversity provides insight into molecular adaptation in a saline microbial mat community
-
Boyd ES, Spear JR, Peters JW. (2009). [FeFe] hydrogenase genetic diversity provides insight into molecular adaptation in a saline microbial mat community. Appl Environ Microbiol 75: 4620-4623.
-
(2009)
Appl Environ Microbiol
, vol.75
, pp. 4620-4623
-
-
Boyd, E.S.1
Spear, J.R.2
Peters, J.W.3
-
11
-
-
0025774452
-
Aerobic sulfate reduction in microbial mats
-
Canfield DE, Des Marais DJ. (1991). Aerobic sulfate reduction in microbial mats. Science 251: 1471-1473. (Pubitemid 121000434)
-
(1991)
Science
, vol.251
, Issue.5000
, pp. 1471-1473
-
-
Canfield, D.E.1
Des Marais, D.J.2
-
12
-
-
0022580237
-
Adaptation to hydrogen sulfide of oxygenic and anoxygenic photosynthesis among cyanobacteria
-
Cohen Y, Jorgensen BB, Revsbech NP, Poplawski R. (1986). Adaptation to hydrogen sulfide of oxygenic and anoxygenic photosynthesis among cyanobacteria. Appl Environ Microbiol 51: 398-407. (Pubitemid 16159848)
-
(1986)
Applied and Environmental Microbiology
, vol.51
, Issue.2
, pp. 398-407
-
-
Cohen, Y.1
Jorgensen, B.B.2
Revsbech, N.P.3
Poplawski, R.4
-
14
-
-
0037399381
-
Biogeochemistry of hypersaline microbial mats illustrates the dynamics of modern microbial ecosystems and the early evolution of the biosphere
-
Des Marais DJ. (2003). Biogeochemistry of hypersaline microbial mats illustrates the dynamics of modern microbial ecosystems and the early evolution of the biosphere. Biol Bull 204: 160-167. (Pubitemid 36516702)
-
(2003)
Biological Bulletin
, vol.204
, Issue.2
, pp. 160-167
-
-
Des Marais, D.J.1
-
15
-
-
33746061683
-
Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB
-
DOI 10.1128/AEM.03006-05
-
DeSantis TZ, Hugenholtz P, Larsen N, Rojas M, Brodie EL, Keller K et al. (2006). Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB. Appl Environ Microbiol 72: 5069-5072. (Pubitemid 44078840)
-
(2006)
Applied and Environmental Microbiology
, vol.72
, Issue.7
, pp. 5069-5072
-
-
DeSantis, T.Z.1
Hugenholtz, P.2
Larsen, N.3
Rojas, M.4
Brodie, E.L.5
Keller, K.6
Huber, T.7
Dalevi, D.8
Hu, P.9
Andersen, G.L.10
-
16
-
-
3042666256
-
MUSCLE: Multiple sequence alignment with high accuracy and high throughput
-
DOI 10.1093/nar/gkh340
-
Edgar RC. (2004). MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res 32: 1792-1797. (Pubitemid 38832724)
-
(2004)
Nucleic Acids Research
, vol.32
, Issue.5
, pp. 1792-1797
-
-
Edgar, R.C.1
-
17
-
-
77951498638
-
Experimental factors affecting PCR-based estimates of microbial species richness and evenness
-
Engelbrektson A, Kunin V, Wrighton KC, Zvenigorodsky N, Chen F, Ochman H et al. (2010). Experimental factors affecting PCR-based estimates of microbial species richness and evenness. ISME J 4: 642-647.
-
(2010)
ISME J
, vol.4
, pp. 642-647
-
-
Engelbrektson, A.1
Kunin, V.2
Wrighton, K.C.3
Zvenigorodsky, N.4
Chen, F.5
Ochman, H.6
-
18
-
-
0029786916
-
Phenotypic and phylogenetic analyses show Microcoleus chthonoplastes to be a cosmopolitan cyanobacterium
-
Garcia-Pichel F, Prufert-Bebout L, Muyzer G. (1996). Phenotypic and phylogenetic analyses show Microcoleus chthonoplastes to be a cosmopolitan cyanobacterium. Appl Environ Microbiol 62: 3284-3291. (Pubitemid 26304115)
-
(1996)
Applied and Environmental Microbiology
, vol.62
, Issue.9
, pp. 3284-3291
-
-
Garcia-Pichel, F.1
Prufert-Bebout, L.2
Muyzer, G.3
-
19
-
-
0017581329
-
Occurrence of facultative anoxygenic photosynthesis among filamentous and unicellular cyanobacteria
-
Garlick S, Oren A, Padan E. (1977). Occurence of facultative anoxygenic photosynthesis among filamentous and unicellular cyanobacteria. J Bacteriol 129: 623-629. (Pubitemid 8043872)
-
(1977)
Journal of Bacteriology
, vol.129
, Issue.2
, pp. 623-629
-
-
Garlick, S.1
Oren, A.2
Padan, E.3
-
20
-
-
0037314132
-
Using ecological diversity measures with bacterial communities
-
DOI 10.1016/S0168-6496(02)00449-X, PII S016864960200449X
-
Hill TC, Walsh KA, Harris JA, Moffett BF. (2003). Using ecological diversity measures with bacterial communities. FEMS Microbiol Ecol 43: 1-11. (Pubitemid 36173508)
-
(2003)
FEMS Microbiology Ecology
, vol.43
, Issue.1
, pp. 1-11
-
-
Hill, T.C.J.1
Walsh, K.A.2
Harris, J.A.3
Moffett, B.F.4
-
21
-
-
0035913370
-
The role of microbial mats in the production of reduced gases on the early Earth
-
DOI 10.1038/35085554
-
Hoehler TM, Bebout BM, Des Marais DJ. (2001). The role of microbial mats in the production of reduced gases on the early Earth. Nature 412: 324-327. (Pubitemid 32691844)
-
(2001)
Nature
, vol.412
, Issue.6844
, pp. 324-327
-
-
Hoehler, T.M.1
Bebout, B.M.2
Des Marais, D.J.3
-
22
-
-
77949601825
-
CD-HIT Suite: A web server for clustering and comparing biological sequences
-
Huang Y, Niu B, Gao Y, Fu L, Li W. (2010). CD-HIT Suite: a web server for clustering and comparing biological sequences. Bioinformatics 26: 680-682.
-
(2010)
Bioinformatics
, vol.26
, pp. 680-682
-
-
Huang, Y.1
Niu, B.2
Gao, Y.3
Fu, L.4
Li, W.5
-
23
-
-
0035487318
-
Counting the uncountable: Statistical approaches to estimating microbial diversity
-
DOI 10.1128/AEM.67.10.4399-4406.2001
-
Hughes JB, Hellmann JJ, Ricketts TH, Bohannan BJ. (2001). Counting the uncountable: statistical approaches to estimating microbial diversity. Appl Environ Microbiol 67: 4399-4406. (Pubitemid 33646064)
-
(2001)
Applied and Environmental Microbiology
, vol.67
, Issue.10
, pp. 4399-4406
-
-
Hughes, J.B.1
Hellmann, J.J.2
Ricketts, T.H.3
Bohannan, B.J.M.4
-
24
-
-
77950526876
-
Dormancy contributes to the maintenance of microbial diversity
-
Jones SE, Lennon JT. (2010). Dormancy contributes to the maintenance of microbial diversity. Proc Natl Acad Sci USA 107: 5881-5886.
-
(2010)
Proc Natl Acad Sci USA
, vol.107
, pp. 5881-5886
-
-
Jones, S.E.1
Lennon, J.T.2
-
25
-
-
0000795962
-
Transition from anoxygenic to oxygenic photosynthesis in a Microcoleus chthonoplastes cyanobacterial mat
-
Jorgensen BB, Cohen Y, Revsbech NP. (1986). Transition from anoxygenic to oxygenic photosynthesis in a Microcoleus chthonoplastes cyanobacterial mat. Appl Environ Microbiol 51: 408-417.
-
(1986)
Appl Environ Microbiol
, vol.51
, pp. 408-417
-
-
Jorgensen, B.B.1
Cohen, Y.2
Revsbech, N.P.3
-
26
-
-
77955094123
-
PyroTagger: A fast, accurate pipeline for analysis of rRNA amplicon pyrosequence data
-
Kunin V, Hugenholtz P. (2010). PyroTagger: A fast, accurate pipeline for analysis of rRNA amplicon pyrosequence data. Open J 1: e1.
-
(2010)
Open J
, vol.1
-
-
Kunin, V.1
Hugenholtz, P.2
-
27
-
-
44649171625
-
Millimeter-scale genetic gradients and community- level molecular convergence in a hypersaline microbial mat
-
Kunin V, Raes J, Harris J, Spear J, Walker J, Ivanova N et al. (2008). Millimeter-scale genetic gradients and community- level molecular convergence in a hypersaline microbial mat. Mol Syst Biol 4: e198.
-
(2008)
Mol Syst Biol
, vol.4
-
-
Kunin, V.1
Raes, J.2
Harris, J.3
Spear, J.4
Walker, J.5
Ivanova, N.6
-
28
-
-
77951976891
-
Biological hydrogen production: Prospects and challenges
-
Lee H, Vermaas WFJ, Rittmann BE. (2010). Biological hydrogen production: prospects and challenges. Trends Biotechnol 28: 262-271.
-
(2010)
Trends Biotechnol
, vol.28
, pp. 262-271
-
-
Lee, H.1
Vermaas, W.F.J.2
Rittmann, B.E.3
-
29
-
-
33646584137
-
Unexpected diversity and complexity of the Guerrero Negro hypersaline microbial mat
-
DOI 10.1128/AEM.72.5.3685-3695.2006
-
Ley RE, Harris JK, Wilcox J, Spear JR, Miller SR, Bebout BM et al. (2006). Unexpected diversity and complexity of the guerrero negro hypersaline microbial mat. Appl Environ Microbiol 72: 3685-3695. (Pubitemid 43728026)
-
(2006)
Applied and Environmental Microbiology
, vol.72
, Issue.5
, pp. 3685-3695
-
-
Ley, R.E.1
Harris, J.K.2
Wilcox, J.3
Spear, J.R.4
Miller, S.R.5
Bebout, B.M.6
Maresca, J.A.7
Bryant, D.A.8
Sogin, M.L.9
Pace, N.R.10
-
30
-
-
2542523843
-
ARB: A software environment for sequence data
-
DOI 10.1093/nar/gkh293
-
Ludwig W, Strunk O, Westram R, Richter L, Meier H. (2004). ARB: a software environment for sequence data. Nucleic Acids Res 32: 1363-1371. (Pubitemid 38854737)
-
(2004)
Nucleic Acids Research
, vol.32
, Issue.4
, pp. 1363-1371
-
-
Ludwig, W.1
Strunk, O.2
Westram, R.3
Richter, L.4
Meier, H.5
Yadhukumar, A.6
Buchner, A.7
Lai, T.8
Steppi, S.9
Jacob, G.10
Forster, W.11
Brettske, I.12
Gerber, S.13
Ginhart, A.W.14
Gross, O.15
Grumann, S.16
Hermann, S.17
Jost, R.18
Konig, A.19
Liss, T.20
Lussbmann, R.21
May, M.22
Nonhoff, B.23
Reichel, B.24
Strehlow, R.25
Stamatakis, A.26
Stuckmann, N.27
Vilbig, A.28
Lenke, M.29
Ludwig, T.30
Bode, A.31
Schleifer, K.-H.32
more..
-
31
-
-
33644873697
-
The integrated microbial genomes (IMG) system
-
Markowitz VM, Korzeniewski F, Palaniappan K, Szeto E, Werner G, Padki A et al. (2006). The integrated microbial genomes (IMG) system. Nucleic Acids Res 34: D344-D348.
-
(2006)
Nucleic Acids Res
, vol.34
-
-
Markowitz, V.M.1
Korzeniewski, F.2
Palaniappan, K.3
Szeto, E.4
Werner, G.5
Padki, A.6
-
32
-
-
0029988943
-
Fermentation and sulfur reduction in the mat-building cyanobacterium Microcoleus chthonoplastes
-
Moezelaar R, Bijvank SM, Stal LJ. (1996). Fermentation and sulfur reduction in the mat-building cyanobacterium Microcoleus chthonoplastes. Appl Environ Microbiol 62: 1752-1758. (Pubitemid 26143454)
-
(1996)
Applied and Environmental Microbiology
, vol.62
, Issue.5
, pp. 1752-1758
-
-
Moezelaar, R.1
Bijvank, S.M.2
Stal, L.J.3
-
34
-
-
37549027613
-
SILVA: A comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB
-
Pruesse E, Quast C, Knittel K, Fuchs BM, Ludwig W, Peplies J et al. (2007). SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB. Nucleic Acids Res 35: 7188-7196.
-
(2007)
Nucleic Acids Res
, vol.35
, pp. 7188-7196
-
-
Pruesse, E.1
Quast, C.2
Knittel, K.3
Fuchs, B.M.4
Ludwig, W.5
Peplies, J.6
-
35
-
-
57449090885
-
Spatial comparison of total vs active bacterial populations by coupling genetic fingerprinting and clone library analyses in the NW Mediterranean Sea
-
Rodriguez-Blanco A, Ghiglione JF, Catala P, Casamayor EO, Lebaron P. (2009). Spatial comparison of total vs active bacterial populations by coupling genetic fingerprinting and clone library analyses in the NW Mediterranean Sea. FEMS Microbiol Ecol 67: 30-42.
-
(2009)
FEMS Microbiol Ecol
, vol.67
, pp. 30-42
-
-
Rodriguez-Blanco, A.1
Ghiglione, J.F.2
Catala, P.3
Casamayor, E.O.4
Lebaron, P.5
-
36
-
-
0024195597
-
Acetylene reduction and hydrogen metabolism by a cyanobacterial/sulfate- reducing bacterial mat ecosystem
-
Skyring GW, Lynch RM, Smith GD. (1988). Acetylene reduction and hydrogen metabolism by a cyanobacterial/ sulfate-reducing bacterial mat ecosystem. Geomicrobiol J 6: 25-31. (Pubitemid 19321607)
-
(1988)
Geomicrobiology Journal
, vol.6
, Issue.1
, pp. 25-31
-
-
Skyring, G.W.1
Lynch, R.M.2
Smith, G.D.3
-
37
-
-
2942605747
-
Quantitative relationship between carbon, hydrogen and sulfur metabolism in cyanobacterial mats
-
Cohen Y, Rosenberg E (eds) American Society for Microbiology: Washington, DC
-
Skyring GW, Lynch RM, Smith GD. (1989). Quantitative relationship between carbon, hydrogen and sulfur metabolism in cyanobacterial mats. In Cohen Y, Rosenberg E (eds), Microbial mats: Physiological ecology of benthic microbial communities. American Society for Microbiology: Washington, DC, pp. 170-179.
-
(1989)
Microbial Mats: Physiological Ecology of Benthic Microbial Communities
, pp. 170-179
-
-
Skyring, G.W.1
Lynch, R.M.2
Smith, G.D.3
-
38
-
-
0030669394
-
Fermentation in cyanobacteria
-
DOI 10.1016/S0168-6445(97)00056-9, PII S0168644597000569
-
Stal LJ, Moezelaar R. (1997). Fermentation in cyanobacteria. FEMS Microbiol Rev 21: 179-211. (Pubitemid 27455844)
-
(1997)
FEMS Microbiology Reviews
, vol.21
, Issue.2
, pp. 179-211
-
-
Stal, L.J.1
Moezelaar, R.2
-
39
-
-
0014151908
-
In situ studies on N2-fixation using the acetylene reduction technique
-
Stewart WD, Fitzgerald GP, Burris RH. (1967). In situ studies on N2-fixation using the acetylene reduction technique. Proc Natl Acad Sci USA 58: 2071-2078.
-
(1967)
Proc Natl Acad Sci USA
, vol.58
, pp. 2071-2078
-
-
Stewart, W.D.1
Fitzgerald, G.P.2
Burris, R.H.3
-
40
-
-
35448935699
-
Cyanobacterial hydrogenases: Diversity, regulation and applications
-
DOI 10.1111/j.1574-6976.2007.00085.x
-
Tamagnini P, Leitao E, Oliveira P, Ferreira D, Pinto F, Harris DJ et al. (2007). Cyanobacterial hydrogenases: diversity, regulation and applications. FEMS Microbiol Rev 31: 692-720. (Pubitemid 47621764)
-
(2007)
FEMS Microbiology Reviews
, vol.31
, Issue.6
, pp. 692-720
-
-
Tamagnini, P.1
Leitao, E.2
Oliveira, P.3
Ferreira, D.4
Pinto, F.5
Harris, D.J.6
Heidorn, T.7
Lindblad, P.8
-
41
-
-
35748974830
-
Occurrence, classification, and biological function of hydrogenases: An overview
-
DOI 10.1021/cr050196r
-
Vignais PM, Billoud B. (2007). Occurrence, classification, and biological function of hydrogenases: an overview. Chem Rev 107: 4206-4272. (Pubitemid 350041744)
-
(2007)
Chemical Reviews
, vol.107
, Issue.10
, pp. 4206-4272
-
-
Vignais, P.M.1
Billoud, B.2
-
42
-
-
0001439525
-
New types of acetate-oxidizing, sulfatereducing Desulfobacter species, D hydrogenophilus sp. nov, D latus sp. Nov and D curvatus sp. Nov
-
Widdel F. (1987). New types of acetate-oxidizing, sulfatereducing Desulfobacter species, D hydrogenophilus sp. nov, D latus sp. Nov and D curvatus sp. nov. Arch Microbiol 148: 286-291.
-
(1987)
Arch Microbiol
, vol.148
, pp. 286-291
-
-
Widdel, F.1
|