메뉴 건너뛰기




Volumn 3, Issue 1, 2012, Pages 115-137

Genomic distribution and divergence of levansucrase-coding genes in Pseudomonas syringae

Author keywords

Erwinia amylovora; Levansucrase; Phage associated promoter element; Pro phage; Pseudomonas syringae

Indexed keywords

AMINO ACID; GLYCOSIDASE; LEVANSUCRASE;

EID: 84858815050     PISSN: None     EISSN: 20734425     Source Type: Journal    
DOI: 10.3390/genes3010115     Document Type: Article
Times cited : (11)

References (47)
  • 2
    • 0031713011 scopus 로고    scopus 로고
    • Cloning, nucleotide sequence, and expression in Escherichia coli of levansucrase genes from the plant pathogens Pseudomonas syringae pv.glycinea and P.syringae pv.phaseolicola
    • Hettwer, U.; Jaeckel, F.R.; Boch, J.; Meyer, M.; Rudolph, K.; Ullrich, M.S. Cloning, nucleotide sequence, and expression in Escherichia coli of levansucrase genes from the plant pathogens Pseudomonas syringae pv. glycinea and P. syringae pv. phaseolicola. Appl. Environ. Microbiol. 1998, 64, 3180-3187.
    • (1998) Appl. Environ. Microbiol , vol.64 , pp. 3180-3187
    • Hettwer, U.1    Jaeckel, F.R.2    Boch, J.3    Meyer, M.4    Rudolph, K.5    Ullrich, M.S.6
  • 3
    • 0035036425 scopus 로고    scopus 로고
    • Characterization and mutational analysis of three allelic lsc genes encoding levansucrase in Pseudomonas syringae
    • Li, H.; Ullrich, M.S. Characterization and mutational analysis of three allelic lsc genes encoding levansucrase in Pseudomonas syringae. J. Bacteriol. 2001, 183, 3282-3292.
    • (2001) J. Bacteriol , vol.183 , pp. 3282-3292
    • Li, H.1    Ullrich, M.S.2
  • 4
    • 33751257152 scopus 로고    scopus 로고
    • Thermoresponsive expression and differential secretion of the extracellular enzyme levansucrase in the plant pathogenic bacterium Pseudomonas syringae
    • Li, H.; Schenk, A.; Srivastava, A.; Zhurina, D.; Ullrich, M.S. Thermoresponsive expression and differential secretion of the extracellular enzyme levansucrase in the plant pathogenic bacterium Pseudomonas syringae. FEMS Microbiol. Lett. 2006, 265, 178-185.
    • (2006) FEMS Microbiol. Lett , vol.265 , pp. 178-185
    • Li, H.1    Schenk, A.2    Srivastava, A.3    Zhurina, D.4    Ullrich, M.S.5
  • 6
    • 24944453122 scopus 로고    scopus 로고
    • Whole-genome sequence analysis of Pseudomonas syringae pv.phaseolicola 1448A reveals divergence among pathovars in genes involved in virulence and transposition
    • Joardar, V.; Lindeberg, M.; Jackson, R.W.; Selengut, J.; Dodson, R.; Brinkac, L.M.; Daugherty, S.C.; Deboy, R.; Durkin, A.S.; Giglio, M.G; et al. Whole-genome sequence analysis of Pseudomonas syringae pv. phaseolicola 1448A reveals divergence among pathovars in genes involved in virulence and transposition. J. Bacteriol. 2005, 187, 6488-6498.
    • (2005) J. Bacteriol , vol.187 , pp. 6488-6498
    • Joardar, V.1    Lindeberg, M.2    Jackson, R.W.3    Selengut, J.4    Dodson, R.5    Brinkac, L.M.6    Daugherty, S.C.7    Deboy, R.8    Durkin, A.S.9    Giglio, M.G.10    et al11
  • 8
    • 58149284564 scopus 로고    scopus 로고
    • A draft genome sequence of Pseudomonas syringae pv.tomato T1 reveals a type III effector repertoire significantly divergent from that of Pseudomonas syringae pv.tomato DC3000
    • Almeida, N.F.; Yan, S.; Lindeberg, M.; Studholme, D.J.; Schneider, D.J.; Condon, B.; Liu, H.; Viana, C.J.; Warren, A.; Evans, C; et al. A draft genome sequence of Pseudomonas syringae pv. tomato T1 reveals a type III effector repertoire significantly divergent from that of Pseudomonas syringae pv. tomato DC3000. Mol. Plant Microbe Interact. 2009, 22, 52-62.
    • (2009) Mol. Plant Microbe Interact , vol.22 , pp. 52-62
    • Almeida, N.F.1    Yan, S.2    Lindeberg, M.3    Studholme, D.J.4    Schneider, D.J.5    Condon, B.6    Liu, H.7    Viana, C.J.8    Warren, A.9    Evans, C.10    et al11
  • 10
    • 40649099520 scopus 로고    scopus 로고
    • Hansenula polymorpha maltase gene promoter with sigma 70-like elements is feasible for Escherichia coli-based biotechnological applications: Expression of three genomic levansucrase genes of Pseudomonas syringae pv.tomato
    • Visnapuu, T.; Mäe, A.; Alamäe, T. Hansenula polymorpha maltase gene promoter with sigma 70-like elements is feasible for Escherichia coli-based biotechnological applications: Expression of three genomic levansucrase genes of Pseudomonas syringae pv. tomato. Process Biochem. 2008, 43, 414-422.
    • (2008) Process Biochem , vol.43 , pp. 414-422
    • Visnapuu, T.1    Mäe, A.2    Alamäe, T.3
  • 11
    • 66449092059 scopus 로고    scopus 로고
    • Fully automated chip-based negative mode nanoelectrospray mass spectrometry of fructooligosaccharides produced by heterologously expressed levansucrase from Pseudomonas syringae pv.tomato DC3000
    • Visnapuu, T.; Zamfir, A.D.; Mosoarca, C; Stanescu, M.D.; Alamäe, T. Fully automated chip-based negative mode nanoelectrospray mass spectrometry of fructooligosaccharides produced by heterologously expressed levansucrase from Pseudomonas syringae pv. tomato DC3000. Rapid Commun. Mass Spec. 2009, 23, 1337-1346.
    • (2009) Rapid Commun. Mass Spec , vol.23 , pp. 1337-1346
    • Visnapuu, T.1    Zamfir, A.D.2    Mosoarca, C.3    Stanescu, M.D.4    Alamäe, T.5
  • 12
    • 80052356113 scopus 로고    scopus 로고
    • Levansucrases from Pseudomonas syringae pv.tomato and P.chlororaphis subsp.aurantiaca: Substrate specificity, polymerizing properties and usage of different acceptors for fructosylation
    • Visnapuu, T.; Mardo, K.; Mosoarca, C; Zamfir, A.D.; Vigants, A.; Alamäe, T. Levansucrases from Pseudomonas syringae pv. tomato and P. chlororaphis subsp. aurantiaca: Substrate specificity, polymerizing properties and usage of different acceptors for fructosylation. J. Biotechnol. 2011, 155, 34-39.
    • (2011) J. Biotechnol , vol.155 , pp. 34-39
    • Visnapuu, T.1    Mardo, K.2    Mosoarca, C.3    Zamfir, A.D.4    Vigants, A.5    Alamäe, T.6
  • 13
    • 1642319596 scopus 로고    scopus 로고
    • Evolution of the core genome of Pseudomonas syringae, a highly clonal, endemic plant pathogen
    • Sarkar, S.F.; Guttman, D.S. Evolution of the core genome of Pseudomonas syringae, a highly clonal, endemic plant pathogen. Appl. Environ. Microbiol. 2004, 70, 1999-2012.
    • (2004) Appl. Environ. Microbiol , vol.70 , pp. 1999-2012
    • Sarkar, S.F.1    Guttman, D.S.2
  • 14
    • 0000947394 scopus 로고
    • Identification of Erwinia amylovora, the fireblight pathogen, by colony hybridization with DNA from plasmid pEA29
    • Falkenstein, H.; Bellemann, P.; Walter, S.; Zeller, W.; Geider, K. Identification of Erwinia amylovora, the fireblight pathogen, by colony hybridization with DNA from plasmid pEA29. Appl. Environ. Microbiol. 1988, 54, 2798-2802.
    • (1988) Appl. Environ. Microbiol , vol.54 , pp. 2798-2802
    • Falkenstein, H.1    Bellemann, P.2    Walter, S.3    Zeller, W.4    Geider, K.5
  • 15
    • 10244243980 scopus 로고
    • Characterization and influence on virulence of the levansucrase gene from the fire blight pathogen
    • Geier, G.; Geider, K. Characterization and influence on virulence of the levansucrase gene from the fire blight pathogen Erwinia amylora. Physiol. Mol. Plant Pathol. 1993, 42, 387-404.
    • (1993) Erwinia Amylora. Physiol. Mol. Plant Pathol , vol.42 , pp. 387-404
    • Geier, G.1    Geider, K.2
  • 16
    • 0031965805 scopus 로고    scopus 로고
    • Characterization on the different dextransucrases excreted in glucose, fructose or sucrose medium by Leuconostoc mesenteroides B 1299
    • Dols, M.; Remaud-Simon, M.; Villemot, R.M.; Vignon, V.; Mosnsan, P. Characterization on the different dextransucrases excreted in glucose, fructose or sucrose medium by Leuconostoc mesenteroides B 1299. Appl. Environ. Microbiol. 1998, 64, 1298-1302.
    • (1998) Appl. Environ. Microbiol , vol.64 , pp. 1298-1302
    • Dols, M.1    Remaud-Simon, M.2    Villemot, R.M.3    Vignon, V.4    Mosnsan, P.5
  • 17
    • 0343852725 scopus 로고    scopus 로고
    • Rahnella aquatilis, a bacterium isolated from soybean rhizosphere, can solubilize hydroxyapatite
    • Kim, K.Y.; Jordan, D.; Krishnan, H.B. Rahnella aquatilis, a bacterium isolated from soybean rhizosphere, can solubilize hydroxyapatite. FEMS Microbiol. Lett. 1997, 153, 273-277.
    • (1997) FEMS Microbiol. Lett , vol.153 , pp. 273-277
    • Kim, K.Y.1    Jordan, D.2    Krishnan, H.B.3
  • 18
    • 1042291218 scopus 로고    scopus 로고
    • Three acidic residues are at the active site of a β-propeller architecture in glycoside hydrolase families 32, 43, 62, and 68
    • Pons, T.; Naumoff, D.G.; Martínez-Fleites, C; Hernández, L. Three acidic residues are at the active site of a β-propeller architecture in glycoside hydrolase families 32, 43, 62, and 68. Proteins 2004, 54, 424-432.
    • (2004) Proteins , vol.54 , pp. 424-432
    • Pons, T.1    Naumoff, D.G.2    Martínez-Fleites, C.3    Hernández, L.4
  • 19
    • 62349102392 scopus 로고    scopus 로고
    • Structural insights into glycoside hydrolase family 32 and 68 enzymes: Functional implications
    • Lammens, W.; LeRoy, K.; Schroeven, L.; Van Laere, A.; Rabijns, A.; van den Ende, W. Structural insights into glycoside hydrolase family 32 and 68 enzymes: Functional implications. J. Exp. Bot. 2009, 60, 727-740.
    • (2009) J. Exp. Bot , vol.60 , pp. 727-740
    • Lammens, W.1    Leroy, K.2    Schroeven, L.3    van Laere, A.4    Rabijns, A.5    van den Ende, W.6
  • 20
  • 21
    • 0027064858 scopus 로고
    • Transposase-induced excision and circularization of the bacterial insertion sequence IS911
    • Polard, P.; Prère, M.F.; Fayet, O.; Chandler, M. Transposase-induced excision and circularization of the bacterial insertion sequence IS911. EMBO J. 1992, 11, 5079-5090.
    • (1992) EMBO J , vol.11 , pp. 5079-5090
    • Polard, P.1    Prère, M.F.2    Fayet, O.3    Chandler, M.4
  • 24
    • 46449109082 scopus 로고    scopus 로고
    • Roadmap to new virulence determinants in Pseudomonas syringae: Insights from comparative genomics and genome organization
    • Lindeberg, M.; Myers, C.R.; Collmer, A.; Schneider, D.J. Roadmap to new virulence determinants in Pseudomonas syringae: Insights from comparative genomics and genome organization. Mol. Plant Microbe Interact. 2008, 21, 685-700.
    • (2008) Mol. Plant Microbe Interact , vol.21 , pp. 685-700
    • Lindeberg, M.1    Myers, C.R.2    Collmer, A.3    Schneider, D.J.4
  • 25
    • 19944413079 scopus 로고    scopus 로고
    • Phage associated bacteriocins reveal a novel mechanism for bacteriocin diversification in Klebsiella
    • Chavan, M.; Rafi, H.; Wertz, J.; Goldstone, C.; Riley, M.A. Phage associated bacteriocins reveal a novel mechanism for bacteriocin diversification in Klebsiella. J. Mol. Evol. 2005, 60, 546-556.
    • (2005) J. Mol. Evol , vol.60 , pp. 546-556
    • Chavan, M.1    Rafi, H.2    Wertz, J.3    Goldstone, C.4    Riley, M.A.5
  • 26
    • 0032804078 scopus 로고    scopus 로고
    • Unusual transcriptional and translational regulation of the bacteriophage Mu mom operon
    • Hattman, S. Unusual transcriptional and translational regulation of the bacteriophage Mu mom operon. Pharmacol. Therapeut. 1999, 84, 367-388.
    • (1999) Pharmacol. Therapeut , vol.84 , pp. 367-388
    • Hattman, S.1
  • 27
    • 0020480589 scopus 로고
    • IS3 can function as a mobile promoter in E.coli
    • Charlier, D.; Piette, J.; Glansdorff, N. IS3 can function as a mobile promoter in E. coli. Nucleic Acids Res. 1982, 10, 5935-5948.
    • (1982) Nucleic Acids Res , vol.10 , pp. 5935-5948
    • Charlier, D.1    Piette, J.2    Glansdorff, N.3
  • 28
    • 0002003278 scopus 로고
    • Transposable Elements as Tools for Molecular Analysis in Bacteria
    • Sherratt, D., Ed.; Oxford University Press: Oxford, UK
    • Berg, C.M.; Berg, D.E. Transposable Elements as Tools for Molecular Analysis in Bacteria. In Mobile Genetic Elements: Frontiers in Molecular Biology; Sherratt, D., Ed.; Oxford University Press: Oxford, UK, 1994; pp. 38-68.
    • (1994) Mobile Genetic Elements: Frontiers In Molecular Biology , pp. 38-68
    • Berg, C.M.1    Berg, D.E.2
  • 29
    • 4544321747 scopus 로고    scopus 로고
    • Complete genomic sequence of bacteriophage B3, a Mu-like phage of Pseudomonas aeruginosa
    • Braid, M.D.; Silhavy, J.L.; Kitts, C.L.; Cano, R.J; Howe, M.M. Complete genomic sequence of bacteriophage B3, a Mu-like phage of Pseudomonas aeruginosa. J. Bacteriol. 2004, 186, 6560-6574.
    • (2004) J. Bacteriol , vol.186 , pp. 6560-6574
    • Braid, M.D.1    Silhavy, J.L.2    Kitts, C.L.3    Cano, R.J.4    Howe, M.M.5
  • 30
    • 0036299014 scopus 로고    scopus 로고
    • Bacteriophage Mu genome sequence: Analysis and comparison with Mu-like prophages in Haemophilus, Neisseria and Deinococcus
    • Morgan, G.J.; Hatfull, G.F.; Casjens, S.; Hendrix, R.W. Bacteriophage Mu genome sequence: Analysis and comparison with Mu-like prophages in Haemophilus, Neisseria and Deinococcus. J. Mol. Biol. 2002, 317, 337-359.
    • (2002) J. Mol. Biol , vol.317 , pp. 337-359
    • Morgan, G.J.1    Hatfull, G.F.2    Casjens, S.3    Hendrix, R.W.4
  • 32
    • 53849144966 scopus 로고    scopus 로고
    • A rapid and easy method for the detection of microbial cellulases on agar plates using Gram's Iodine
    • Kasana, R.C.; Salwan, R.; Dhar, H.; Dutt, S.; Gulati, A. A rapid and easy method for the detection of microbial cellulases on agar plates using Gram's Iodine. Curr. Biol. 2008, 57, 503-507.
    • (2008) Curr. Biol , vol.57 , pp. 503-507
    • Kasana, R.C.1    Salwan, R.2    Dhar, H.3    Dutt, S.4    Gulati, A.5
  • 34
    • 0030796516 scopus 로고    scopus 로고
    • Avirulence gene D of Pseudomonas syringae pv.tomato may have undergone horizontal gene transfer
    • Hanekamp, T.; Kobayashi, D.; Hayes, S.; Stayton, M.M. Avirulence gene D of Pseudomonas syringae pv. tomato may have undergone horizontal gene transfer. FEBS Lett. 1997, 415, 40-44.
    • (1997) FEBS Lett , vol.415 , pp. 40-44
    • Hanekamp, T.1    Kobayashi, D.2    Hayes, S.3    Stayton, M.M.4
  • 36
    • 0027225146 scopus 로고
    • Effects of environmental and nutritional factors on production of the polyketide phytotoxin coronatine by Pseudomonas syringae pv.glycinea
    • Palmer, D.A.; Bender, C.L. Effects of environmental and nutritional factors on production of the polyketide phytotoxin coronatine by Pseudomonas syringae pv. glycinea. Appl. Environ. Microbiol. 1993, 59, 1619-1623.
    • (1993) Appl. Environ. Microbiol , vol.59 , pp. 1619-1623
    • Palmer, D.A.1    Bender, C.L.2
  • 37
    • 0028793123 scopus 로고
    • Four new derivatives of the broad-host-range cloning vector pBBR1MCS, carrying different antibiotic-resistance cassettes
    • Kovach, M.E.; Elzer, P.H.; Hill, D.S.; Robertson, G.T.; Farris, M.A.; Roop, R.M.; Peterson, K.M. Four new derivatives of the broad-host-range cloning vector pBBR1MCS, carrying different antibiotic-resistance cassettes. Gene 1995, 166, 175-176.
    • (1995) Gene , vol.166 , pp. 175-176
    • Kovach, M.E.1    Elzer, P.H.2    Hill, D.S.3    Robertson, G.T.4    Farris, M.A.5    Roop, R.M.6    Peterson, K.M.7
  • 38
    • 84886413168 scopus 로고
    • Methods for General and Molecular Bacteriology; American Society for Microbiology: Washington, DC
    • Gerhardt, P.; Murray, R.G.E.; Wood, W.A.; Krieg, N.R. Methods for General and Molecular Bacteriology; American Society for Microbiology: Washington, DC, USA, 1994.
    • (1994) USA
    • Gerhardt, P.1    Murray, R.G.E.2    Wood, W.A.3    Krieg, N.R.4
  • 39
    • 0000527903 scopus 로고
    • Replication of an origin containing derivative of plasmid RK2 dependent on a plasmid function provided in trans
    • Figurski, D.H.; Helinski, D.R. Replication of an origin containing derivative of plasmid RK2 dependent on a plasmid function provided in trans. Proc. Natl. Acad. Sci. USA 1979, 76, 1648-1652.
    • (1979) Proc. Natl. Acad. Sci. USA , vol.76 , pp. 1648-1652
    • Figurski, D.H.1    Helinski, D.R.2
  • 40
    • 33751232425 scopus 로고    scopus 로고
    • The algT gene of Pseudomonas syringae pv.glycinea and new insights into the transcriptional organization of the algT-muc gene cluster
    • Schenk, A.; Berger, M.; Keith, L.M.; Bender, C.L.; Muskhelishvili, G.; Ullrich, M.S. The algT gene of Pseudomonas syringae pv. glycinea and new insights into the transcriptional organization of the algT-muc gene cluster. J. Bacteriol. 2006, 188, 8013-8021.
    • (2006) J. Bacteriol , vol.188 , pp. 8013-8021
    • Schenk, A.1    Berger, M.2    Keith, L.M.3    Bender, C.L.4    Muskhelishvili, G.5    Ullrich, M.S.6
  • 42
    • 77956324972 scopus 로고    scopus 로고
    • Comparative genome analysis provides insights into the evolution and adaptation of Pseudomonas syringae pv.aesculi on Aesculus hippocastanum
    • doi:10.1371/journal.pone.0010224
    • Green, S.; Studholme, D.J.; Laue, B.E.; Dorati, F.; Lovell, H.; Arnold, D.; Cottrell, J.E.; Bridgett, S.; Blaxter, M.; Huitema, E.; et al. Comparative genome analysis provides insights into the evolution and adaptation of Pseudomonas syringae pv. aesculi on Aesculus hippocastanum. PLoS One 2010, 5, doi:10.1371/journal.pone.0010224.
    • (2010) PLoS One , pp. 5
    • Green, S.1    Studholme, D.J.2    Laue, B.E.3    Dorati, F.4    Lovell, H.5    Arnold, D.6    Cottrell, J.E.7    Bridgett, S.8    Blaxter, M.9    Huitema, E.10    et al11
  • 43
    • 79960944810 scopus 로고    scopus 로고
    • Dynamic evolution of pathogenicity revealed by sequencing and comparative genomics of 19 Pseudomonas syringae Isolates
    • e1002132.doi:10.1371/journal.ppat.1002132
    • Baltrus, D.A.; Nishimura, M.T.; Romanchuk, A.; Chang, J.H.; Mukhtar, M.S.; Cherkis, K.; Roach, J.; Grant, S.R.; Jones, C.D.; Dangl, J.L. Dynamic evolution of pathogenicity revealed by sequencing and comparative genomics of 19 Pseudomonas syringae Isolates. PLoS Pathog. 2011, 7, e1002132.doi:10.1371/journal.ppat.1002132.
    • (2011) PLoS Pathog , pp. 7
    • Baltrus, D.A.1    Nishimura, M.T.2    Romanchuk, A.3    Chang, J.H.4    Mukhtar, M.S.5    Cherkis, K.6    Roach, J.7    Grant, S.R.8    Jones, C.D.9    Dangl, J.L.10
  • 44
    • 0034725942 scopus 로고    scopus 로고
    • Molecular cloning of a gene encoding the thermoactive levansucrase from Rahnella aquatilis and its growth phase-dependent expression in Escherichia coli
    • Seo, J.W.; Song, K.B.; Jang, K.H.; Kim, C.H.; Jung, B.H.; Rhee, S.K. Molecular cloning of a gene encoding the thermoactive levansucrase from Rahnella aquatilis and its growth phase-dependent expression in Escherichia coli. J. Biotechnol. 2000, 81, 63-72.
    • (2000) J. Biotechnol , vol.81 , pp. 63-72
    • Seo, J.W.1    Song, K.B.2    Jang, K.H.3    Kim, C.H.4    Jung, B.H.5    Rhee, S.K.6
  • 45
    • 18844452429 scopus 로고    scopus 로고
    • Creation and genetic restoration of Erwinia amylovora strains with low levan synthesis
    • Du, Z.; Jakovljevic, V.; Salm, H.; Geider, K. Creation and genetic restoration of Erwinia amylovora strains with low levan synthesis. Physiol. Mol. Plant Pathol. 2004, 65, 115-122.
    • (2004) Physiol. Mol. Plant Pathol , vol.65 , pp. 115-122
    • du, Z.1    Jakovljevic, V.2    Salm, H.3    Geider, K.4
  • 46
    • 48749097909 scopus 로고    scopus 로고
    • The genome of Erwinia tasmaniensis strain Et1/99, a non-pathogenic bacterium in the genus Erwinia
    • Kube, M.; Migdoll, A.M.; Muller, I.; Kuhl, H.; Beck, A.; Reinhardt, R.; Geider, K. The genome of Erwinia tasmaniensis strain Et1/99, a non-pathogenic bacterium in the genus Erwinia. Environ. Microbiol. 2008, 10, 2211-2222.
    • (2008) Environ. Microbiol , vol.10 , pp. 2211-2222
    • Kube, M.1    Migdoll, A.M.2    Muller, I.3    Kuhl, H.4    Beck, A.5    Reinhardt, R.6    Geider, K.7
  • 47
    • 84858854474 scopus 로고    scopus 로고
    • Homepage of ExPASy, accessed on 18 January 2012
    • Homepage of ExPASy. Available online: http://expasy.org/ (accessed on 18 January 2012).


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.