Novel 20-D descriptors of protein sequences and it's applications in similarity analysis

Chemical Physics Letters

Volumn 531, Issue , 2012, Pages 261-266

  Yu, Hong Jie ^a,b,c   Huang, De Shuang ^a  

^a INSTITUTE OF INTELLIGENT MACHINES   (China)

^b UNIVERSITY OF SCIENCE AND TECHNOLOGY OF CHINA   (China)

^c ANHUI SCIENCE AND TECHNOLOGY UNIVERSITY   (China)

Author keywords

[No Author keywords available]

Indexed keywords

CONDENSED REPRESENTATIONS; DESCRIPTORS; FEATURE VECTORS; PROTEIN SEQUENCES; SIMILARITY ANALYSIS; SINGULAR VALUES DECOMPOSITIONS;

CHEMISTRY; PHYSICAL CHEMISTRY;

MATHEMATICAL TRANSFORMATIONS;

EID: 84858751812     PISSN: 00092614     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.cplett.2012.02.030     Document Type: Article

References (41)

1. E. Hamori, and J. Ruskin J. Biol. Chem. 258 1983 1318
2. E. Hamori Nature 1985 585
3. M.A. Gates Nature 316 1985 219
4. M. Randić, M. Vracko, N. Lers, and D. Plavsic Chem. Phys. Lett. 371 2003 202
5. M. Randić, M. Vracko, N. Lers, and D. Plavsic Chem. Phys. Lett. 2003 1
6. M. Randić, and J. Zupan Environ. Res. 15 2004 191
7. M. Randić Chem. Phys. Lett. 456 2008 84
8. M. Randić, J. Zupan, and D. Vikić-Topić J. Mol. Graph. Model. 26 2007 290
9. M. Randić, J. Zupan, A.T. Balaban, D.e. Vikić-Topić, and D. Plavšić Chem. Rev. 111 2011 790
10. A. Nandy, M. Harle, and S.C. Basak ARKIVOC 2006 211
11. R. Zhang, and C.T. Zhang J. Biomol. Struct. Dyn. 11 1994 767
12. B. Liao J. Mol. Struct. (THEOCHEM) 2005 199
13. B. Liao, R. Li, W. Zhu, and X. Xiang J. Math. Chem. 42 2006 47
14. B. Liao, X. Sun, and Q. Zeng Bioinformatics 26 2010 2678
15. B. Liao, M. Tan, and K. Ding Chem. Phys. Lett. 402 2005 380
16. B. Liao, and W. Zhu Curr. Comput.-Aided Drug Des. 2 2006 275
17. G. Huang, B. Liao, Y. Li, and Z. Liu Chem. Phys. Lett. 462 2008 129
18. Y.-h. Yao, Q. Dai, X.-Y. Nan, P.-A. He, Z.-M. Nie, S.-P. Zhou, and Y.-Z. Zhang J. Comput. Chem. 29 2008 1632
19. Z.J. Zhang Bioinformatics 25 2009 1112
20. X. Tang, P. Zhou, and W. Qiu Chin. Sci. Bull. 55 2010 701
21. C. Li, H. Ma, Y. Zhou, X. Wang, and X. Zheng J. Comput. Chem. 32 2011 675
22. G. Xie, and Z. Mo J. Theor. Biol. 269 2011 123
23. Q. Dai, X. Liu, Yuhua Yao, and F. Zhao J. Theor. Biol. 1 2011 174
24. P.-a. He, J. Wei, Y. Yao, and Z. Tie Physica A 2011
25. G. Huang, H. Zhou, Y. Li, and L. Xu J. Theor. Biol. 281 2011 107
26. M. Randić J. Chem. Inf. Comput. Sci. 40 2000 50
27. Z.-P. Feng Biopolymers 58 2000 491
28. M. Novič, and M. Randić SAR QSAR Environ. Res. 19 2008 317
29. A. Nandy, A. Ghosh, and P. Nandy In Sili. Biol. 9 2009
30. Y.-H. Yao, Q. Dai, C. Li, P.-A. He, X.-Y. Nan, and Y.-Z. Zhang Proteins 73 2008 864
31. J. Wen, and Y. Zhang Chem. Phys. Lett. 476 2009 281
32. M.I. Abo el Maaty, M.M. Abo-Elkhier, and M.A. Abd Elwahaab Physica A 389 2010 4668
33. P.-A. He, Y.-P. Zhang, Y.-H. Yao, Y.-F. Tang, and X.-Y. Nan J. Comput. Chem. 31 2010 2136
34. Z.-C. Wu, X. Xiao, and K.-C. Chou J. Theor. Biol. 267 2010 29
35. C. Yu, S.-Y. Cheng, R.L. He, and S.S.T. Yau Gene 486 2011 110
36. W. Zhu, B. Liao, and K. Ding J. Mol. Struct. (THEOCHEM) 2005 193
37. J. Feng, X. Liu, and T. Wang J. Biomol. Struct. Dyn. 25 2008 621
38. M. Randić Chem. Phys. Lett. 444 2007 176
39. G. Golub, and C.F. van Loan Matrix Computations third ed. 1996 Johns Hopkins University Press
40. S.C. Basak, B.D. Gute, and D. Mills ARKIVOC 2006 157
41. Y. Cao J. Mol. Evol. 47 1998 307