메뉴 건너뛰기




Volumn 19, Issue 3-4, 2008, Pages 317-337

Representation of proteins as walks in 20-D space

Author keywords

Line distance matrix; Non graphical representation of proteins; Protein profiles

Indexed keywords

AMINO ACIDS; VECTOR SPACES;

EID: 47349096545     PISSN: 1062936X     EISSN: 1029046X     Source Type: Journal    
DOI: 10.1080/10629360802085066     Document Type: Article
Times cited : (33)

References (40)
  • 1
    • 0000390142 scopus 로고
    • Binary codes capable of correcting deletions, insertions, and reversals
    • V.I. Levenshtein, Binary codes capable of correcting deletions, insertions, and reversals, Dokl. Akad. Nauk SSSR 163 (1965), pp. 845-848.
    • (1965) Dokl. Akad. Nauk SSSR , vol.163 , pp. 845-848
    • Levenshtein, V.I.1
  • 2
    • 0024340861 scopus 로고
    • Graphic representation of long DNA sequences by the method of H curves - current results and future aspects
    • E. Hamori, Graphic representation of long DNA sequences by the method of H curves - current results and future aspects, BioTechniques 7 (1989), pp. 710-720.
    • (1989) BioTechniques , vol.7 , pp. 710-720
    • Hamori, E.1
  • 3
    • 0025340372 scopus 로고
    • Chaos game representation of gene structure
    • H.J. Jeffrey, Chaos game representation of gene structure, Nucleic Acids Res. 18 (1990), pp. 2163-2170.
    • (1990) Nucleic Acids Res , vol.18 , pp. 2163-2170
    • Jeffrey, H.J.1
  • 4
    • 0000347441 scopus 로고
    • A new graphical representation and analysis of DNA sequence structure: I. Methodology and application to globin genes
    • A.A. Nandy, A new graphical representation and analysis of DNA sequence structure: I. Methodology and application to globin genes, Curr. Sci. 66 (1994), pp. 309-314.
    • (1994) Curr. Sci , vol.66 , pp. 309-314
    • Nandy, A.A.1
  • 5
    • 0028889673 scopus 로고
    • Random walk and gap plots of DNA sequences
    • P.M. Leong and S. Mogenthaler, Random walk and gap plots of DNA sequences, Comput. Appl. Biosci. 12 (1995), pp. 503-511.
    • (1995) Comput. Appl. Biosci , vol.12 , pp. 503-511
    • Leong, P.M.1    Mogenthaler, S.2
  • 6
    • 0011914407 scopus 로고
    • Perceptible features in graphical representations of nucleic acid sequences
    • C.A. Pickover, ed, World Scientific, Singapore
    • J. Ninio and E. Mizraji, Perceptible features in graphical representations of nucleic acid sequences, in Visualizing Biological information, C.A. Pickover, ed., World Scientific, Singapore, 1995, pp. 33-42.
    • (1995) Visualizing Biological information , pp. 33-42
    • Ninio, J.1    Mizraji, E.2
  • 7
    • 0042184141 scopus 로고
    • Representation of biological sequences using point geometry analysis
    • C.A. Pickover, ed, World Scientific, Singapore
    • Y.K. Huen, Representation of biological sequences using point geometry analysis, in Visualizing Biological information, C.A. Pickover, ed., World Scientific, Singapore, 1995, pp. 165-182.
    • (1995) Visualizing Biological information , pp. 165-182
    • Huen, Y.K.1
  • 9
    • 1442336331 scopus 로고    scopus 로고
    • Graphical representation of DNA as a 2-D map
    • M. Randić, Graphical representation of DNA as a 2-D map, Chem. Phys. Lett. 386 (2004), pp. 468-471.
    • (2004) Chem. Phys. Lett , vol.386 , pp. 468-471
    • Randić, M.1
  • 10
    • 17844389846 scopus 로고    scopus 로고
    • Four-color map representation of DNA or RNA sequences and their numerical characterization
    • M. Randić, N. Lerš, D. Plavšić, S.C. Basak, and A.T. Balaban, Four-color map representation of DNA or RNA sequences and their numerical characterization, Chem. Phys. Lett. 407 (2005), pp. 205-208.
    • (2005) Chem. Phys. Lett , vol.407 , pp. 205-208
    • Randić, M.1    Lerš, N.2    Plavšić, D.3    Basak, S.C.4    Balaban, A.T.5
  • 11
    • 2442500682 scopus 로고    scopus 로고
    • Highly compact 2D graphical representation of DNA sequences
    • M. Randić and J. Zupan, Highly compact 2D graphical representation of DNA sequences, SAR QSAR Environ. Res. 15 (2004), pp. 191-205.
    • (2004) SAR QSAR Environ. Res , vol.15 , pp. 191-205
    • Randić, M.1    Zupan, J.2
  • 12
    • 0000678497 scopus 로고    scopus 로고
    • A novel 2-D graphical representation of DNA sequences of low degeneracy
    • X. Guo, M. Randić, and S.C. Basak, A novel 2-D graphical representation of DNA sequences of low degeneracy, Chem. Phys. Lett. 350 (2001), pp. 106-112.
    • (2001) Chem. Phys. Lett , vol.350 , pp. 106-112
    • Guo, X.1    Randić, M.2    Basak, S.C.3
  • 13
    • 1542514776 scopus 로고    scopus 로고
    • On a 3-D representation of DNA primary sequences
    • C. Li and J. Wang, On a 3-D representation of DNA primary sequences, Comb. Chem. High T. Scr. 7 (2004), pp. 23-27.
    • (2004) Comb. Chem. High T. Scr , vol.7 , pp. 23-27
    • Li, C.1    Wang, J.2
  • 14
    • 0037413312 scopus 로고    scopus 로고
    • DB-Curve: A novel 2D method of DNA sequence visualization and representation
    • Y. Wu, A.W. Liew, H. Yan, and M. Yang, DB-Curve: a novel 2D method of DNA sequence visualization and representation, Chem. Phys. Lett. 367 (2003), pp. 170-176.
    • (2003) Chem. Phys. Lett , vol.367 , pp. 170-176
    • Wu, Y.1    Liew, A.W.2    Yan, H.3    Yang, M.4
  • 15
    • 0037435485 scopus 로고    scopus 로고
    • Novel 2-D graphical representation of DNA sequences and their numerical characterization
    • M. Randić, M. Vračko, N. Lerš, and D. Plavšić, Novel 2-D graphical representation of DNA sequences and their numerical characterization, Chem. Phys. Lett. 368 (2003), pp. 1-6.
    • (2003) Chem. Phys. Lett , vol.368 , pp. 1-6
    • Randić, M.1    Vračko, M.2    Lerš, N.3    Plavšić, D.4
  • 18
    • 34250857482 scopus 로고    scopus 로고
    • On representation of proteins by star-like graphs
    • M. Randić, J. Zupan, and D. Vikić-Topić, On representation of proteins by star-like graphs, J. Mol. Graph. Model. 26 (2007), pp. 290-305.
    • (2007) J. Mol. Graph. Model , vol.26 , pp. 290-305
    • Randić, M.1    Zupan, J.2    Vikić-Topić, D.3
  • 19
    • 0037363676 scopus 로고    scopus 로고
    • On a four-dimensional representation of DNA primary sequences
    • M. Randić and A.T. Balaban, On a four-dimensional representation of DNA primary sequences, J. Chem. Inf. Comp. Sci. 43 (2003), pp. 532-539.
    • (2003) J. Chem. Inf. Comp. Sci , vol.43 , pp. 532-539
    • Randić, M.1    Balaban, A.T.2
  • 21
    • 33645325372 scopus 로고    scopus 로고
    • On graphical and numerical representation of protein sequences
    • F. Bai and T. Wang, On graphical and numerical representation of protein sequences, J. Biomol. Struct. Dyn. 23 (2006), pp. 537-546.
    • (2006) J. Biomol. Struct. Dyn , vol.23 , pp. 537-546
    • Bai, F.1    Wang, T.2
  • 22
    • 32344433839 scopus 로고    scopus 로고
    • Novel 2-D graphical representation of proteins
    • M. Randić, D. Butina, and J. Zupan, Novel 2-D graphical representation of proteins, Chem. Phys. Lett. 419 (2005), pp. 528-532.
    • (2005) Chem. Phys. Lett , vol.419 , pp. 528-532
    • Randić, M.1    Butina, D.2    Zupan, J.3
  • 23
    • 0034784262 scopus 로고    scopus 로고
    • The connectivity index 25 years after
    • M. Randić, The connectivity index 25 years after, J. Mol. Graph. Model. 20 (2001), pp. 19-35.
    • (2001) J. Mol. Graph. Model , vol.20 , pp. 19-35
    • Randić, M.1
  • 24
    • 3242747200 scopus 로고    scopus 로고
    • Handbook of molecular descriptors, methods and principles
    • R. Mannhold, H. Kubinyi, and H. Timmerman, eds, Wiley-VCH, Weinheim, Germany
    • R. Todeschini and V. Consoni, Handbook of molecular descriptors, methods and principles, in Medicinal Chemistry, Vol. 11, R. Mannhold, H. Kubinyi, and H. Timmerman, eds., Wiley-VCH, Weinheim, Germany, 2000.
    • (2000) Medicinal Chemistry , vol.11
    • Todeschini, R.1    Consoni, V.2
  • 26
    • 85195021379 scopus 로고    scopus 로고
    • A.R. Katrizky, V.S. Lobanov, and M. Karelson, CODESSA (Comprehensive Descriptors for Structural and Statistical Analysis), University of Florida, Gainesville, FL, 1995.
    • A.R. Katrizky, V.S. Lobanov, and M. Karelson, CODESSA (Comprehensive Descriptors for Structural and Statistical Analysis), University of Florida, Gainesville, FL, 1995.
  • 27
    • 0035353661 scopus 로고    scopus 로고
    • On the interpretation of the well-known topological indices
    • M. Randić and J. Zupan, On the interpretation of the well-known topological indices, J. Chem. Inf. Comput. Sci. 41 (2001), pp. 550-560.
    • (2001) J. Chem. Inf. Comput. Sci , vol.41 , pp. 550-560
    • Randić, M.1    Zupan, J.2
  • 28
    • 0000026923 scopus 로고    scopus 로고
    • Novel strategies in the search of topological indices
    • J. Devillers and A.T. Balaban, eds, Gordon and Breach, Amsterdam
    • E. Estrada, Novel strategies in the search of topological indices, in Topological Indices and Related Descriptors in QSAR and QSPR, J. Devillers and A.T. Balaban, eds., Gordon and Breach, Amsterdam, 1999, pp. 403-453.
    • (1999) Topological Indices and Related Descriptors in QSAR and QSPR , pp. 403-453
    • Estrada, E.1
  • 30
    • 0001041845 scopus 로고    scopus 로고
    • Topological indices
    • P.v.R. Schleyer, N.L. Allinger, T. Clark, J. Gasteiger, P.A. Kollman, H.F. Schaefer III, and P.R. Schreiner, eds, John Wiley & Sons, Chichester
    • M. Randić, Topological indices, in Encyclopedia of Computational Chemistry, P.v.R. Schleyer, N.L. Allinger, T. Clark, J. Gasteiger, P.A. Kollman, H.F. Schaefer III, and P.R. Schreiner, eds., John Wiley & Sons, Chichester, 1998, pp. 3018-3032.
    • (1998) Encyclopedia of Computational Chemistry , pp. 3018-3032
    • Randić, M.1
  • 31
    • 0002085437 scopus 로고    scopus 로고
    • Historical development of topological indices
    • J. Devillers and A.T. Balaban, eds, Gordon and Breach, Amsterdam
    • A.T. Balaban and O. Ivanciuc, Historical development of topological indices, in Topological Indices and Related Descriptors in QSAR and QSPR, J. Devillers and A.T. Balaban, eds., Gordon and Breach, Amsterdam, 1999, pp. 21-58.
    • (1999) Topological Indices and Related Descriptors in QSAR and QSPR , pp. 21-58
    • Balaban, A.T.1    Ivanciuc, O.2
  • 32
    • 0002291769 scopus 로고    scopus 로고
    • Use of graph theoretical and geometrical molecular descriptors in structure-activity relationships
    • A.T. Balaban, ed, Plenum Press, New York
    • S.C. Basak, G.D. Grunwald, and G.J. Niemi, Use of graph theoretical and geometrical molecular descriptors in structure-activity relationships, in From Chemical Topology to Three-dimensional Geometry, A.T. Balaban, ed., Plenum Press, New York, 1997, pp. 73-116.
    • (1997) From Chemical Topology to Three-dimensional Geometry , pp. 73-116
    • Basak, S.C.1    Grunwald, G.D.2    Niemi, G.J.3
  • 33
    • 38549146281 scopus 로고    scopus 로고
    • On representation of DNA by line distance matrix
    • M. Randić, J. Zupan, and T. Pisanski, On representation of DNA by line distance matrix, J. Math. Chem. 43 (2008), pp. 674-692.
    • (2008) J. Math. Chem , vol.43 , pp. 674-692
    • Randić, M.1    Zupan, J.2    Pisanski, T.3
  • 34
    • 34548636023 scopus 로고    scopus 로고
    • On description of biological sequences by spectral properties of line distance matrices
    • G. Jaklič, T. Pisanski, and M. Randić, On description of biological sequences by spectral properties of line distance matrices, MATCH Commun. Math. Comput. Chem. 58 (2007), pp. 301-307.
    • (2007) MATCH Commun. Math. Comput. Chem , vol.58 , pp. 301-307
    • Jaklič, G.1    Pisanski, T.2    Randić, M.3
  • 36
    • 0000733018 scopus 로고
    • Molecular profiles. Novel geometry-dependent molecular descriptors
    • M. Randić, Molecular profiles. Novel geometry-dependent molecular descriptors, New J. Chem. 19 (1995), pp. 781-791.
    • (1995) New J. Chem , vol.19 , pp. 781-791
    • Randić, M.1
  • 37
    • 33751156489 scopus 로고
    • Molecular shape profiles
    • M. Randić, Molecular shape profiles, J. Chem. Inf. Comput. Sci. 35 (1995), pp. 373-382.
    • (1995) J. Chem. Inf. Comput. Sci , vol.35 , pp. 373-382
    • Randić, M.1
  • 38
    • 47349126419 scopus 로고    scopus 로고
    • On novel representation of proteins based on amino acid adjacency matrix
    • M. Randić, M. Novič, and M. Vračko, On novel representation of proteins based on amino acid adjacency matrix, SAR QSAR Environ. Res. 19 (2008), pp. 339-349.
    • (2008) SAR QSAR Environ. Res , vol.19 , pp. 339-349
    • Randić, M.1    Novič, M.2    Vračko, M.3
  • 39
    • 34250857482 scopus 로고    scopus 로고
    • On representation of proteins by star-like graphs
    • M. Randić, J. Zupan, and D. Vikić-Topić, On representation of proteins by star-like graphs, J. Mol. Graph. Model. 26 (2007), pp. 290-305.
    • (2007) J. Mol. Graph. Model , vol.26 , pp. 290-305
    • Randić, M.1    Zupan, J.2    Vikić-Topić, D.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.