Genetic population structure of red mangrove (Rhizophora mangle L.) along the northwestern coast of Mexico

Aquatic Botany

Volumn 99, Issue , 2012, Pages 20-26

  Sandoval Castro, Eduardo ^a   Muñiz Salazar, Raquel ^a   Enríquez Paredes, Luis Manuel ^a   Riosmena Rodríguez, Rafael ^b   Dodd, Richard S ^c   Tovilla Hernández, Cristian ^d   Arredondo García, María Concepción ^a  

^a UNIVERSIDAD AUTÓNOMA DE BAJA CALIFORNIA   (Mexico)

^b UNIVERSIDAD AUTÓNOMA DE BAJA CALIFORNIA SUR   (Mexico)

^c UNIVERSITY OF CALIFORNIA   (United States)

^d EL COLEGIO DE LA FRONTERA SUR   (Mexico)

Author keywords

Gene flow; Genetic diversity; Genetics conservation; Gulf of California; Rhizophora mangle

Indexed keywords

COASTAL ZONE; CONSERVATION GENETICS; EFFECTIVE POPULATION SIZE; ENVIRONMENTAL STRESS; GENE FLOW; GENETIC DIFFERENTIATION; GENETIC STRUCTURE; HETEROGENEITY; MANGROVE; MARINE ENVIRONMENT;

BAJA CALIFORNIA [(STT) MEXICO]; GULF OF CALIFORNIA; MEXICO [NORTH AMERICA]; PACIFIC OCEAN;

RHIZOPHORA MANGLE;

EID: 84858745797     PISSN: 03043770     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.aquabot.2012.01.002     Document Type: Article

References (50)

1. Álvarez-Borrego S. Physical oceanography. Island Biogeography of the Sea of Cortés 2002, 41-59. T.J. Case, T.J. Cody, M.L. Ezcurra (Eds.).
2. Arbeláez-Cortes E., Castillo-Cárdenas M.F., Toro-Perea N., Cárdenas-Henao H. Genetic structure of the red mangrove (Rhizophora mangle L.) on the Colombian Pacific detected by microsatellite molecular markers. Hydrobiologia 2007, 583:321-330.
3. Arnaud-Haond S., Teixeira S., Massa S.I., Billot C., Saenger P., Coupland G., Duarte C.M., Serrao E.A. Genetic structure at range edge: low diversity and high inbreeding in Southeast Asian mangrove (Avicennia marina) populations. Mol. Ecol. 2006, 15:3515-3525.
4. Beerli P., Felsenstein J. Maximum likelihood estimation of migration rates and effective population numbers in two populations using a coalescent approach. Genetics 1999, 152:763-773.
5. Beerli P., Palczewski M. Unified framework to evaluate Panmixia and migration direction among multiple sampling locations. Genetics 2010, 185:313-326.
6. Bernardi G., Findley L., Rocha-Olivares A. Vicariance and dispersal across Baja California in disjunct marine fish populations. Evolution 2003, 57:1599-1609.
7. Brusca R.C. Common Internal Invertebrates of the Gulf of California 1980, University of Arizona Press, Tucson, Arizona.
8. Castro R., Mascarenhas A.S., Durazo-Arvizu R., Collins C.A. Variación estacional de la temperatura y salinidad en la entrada del Golfo de California, México. Cienc. Mar. 2000, 26:561-563.
9. Cerón-Souza I., Rivera-Ocasio E., Medina E., Jiménez J.A., McMillan W.O., Bermingham E. Hybridization and introgression in new world red mangroves, Rhizophora (Rhizophoraceae). Am. J. Bot. 2010, 97(6):945-957.
10. Corander J., Waldmann P., Sillanpää M.J. Bayesian analysis of genetic differentiation between populations. Genetics 2003, 163:367-374.
11. Coyer J.A., Smith G.J., Andersen R.A. Evolution of Macrocystis spp. (Phaeophiceae) as determined by ITS1 and ITS2 sequences. J. Phycol. 2001, 37:574-585.
12. Dodd R.S., Afzal-Rafii Z., Kashani N., Budrick J. Land barriers and open oceans: effects on genetic diversity and population structure in Avicennia germinans L. (Avicenniaceae). Mol. Ecol. 2002, 11:1327-1338.
13. Duke N.C., Ball M.C., Ellison J.C. Factors influencing biodiversity and distributional gradients in mangroves. Glob. Ecol. Biogeogr. Lett. 1998, 7:27-47.
14. Duke N.C., Meynecke J., Dittmann S., Ellison A.M., Anger K., Berger U., Cannicci S., Diele K., Ewel K.C., Field C.D., Koedman N., Lee S.Y., Marchand C., Nordhaus I., Dahdouh-Guebas F. A world without mangroves?. Science 2007, 317:41-42.
15. Durazo-Arvizu R., Baumgartner T.R. Evolution of oceanographic conditions off Baja California: 1997-1999. Prog. Oceanogr. 2002, 54:7-31.
16. Espinoza-ávalos J. Macroalgas Marinas del Golfo de California. Biodiversidad Marina y Costera de México 1993, Comisión Nacional Biodiversidad y CIQRO, México, 865 pp. S.I.S.-V. González (Ed.).
17. Evanno G., Regnauth S., Goudet J. Detecting the number of cluster of individuals using the software STRUCTURE: a simulation study. Mol. Ecol. 2005, 14:2611-2620.
18. Excoffier L., Lischer H.E.L. Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows. Mol. Ecol. Resour. 2010, 10:564-567.
19. Excoffier L., Smouse P., Quattro J. Analysis of molecular variance inferred from metric distances among DNA haplotypes: application to human mitochondrial DNA restriction data. Genetics 1992, 131:479-491.
20. Falush D., Stephens M., Donelly P. Inference of population structure using multilocus genotype data: linked loci and correlated allele frequencies. Genetics 2003, 164:945-959.
21. Giang L.H., Hong P.N., Tuan M.S., Harada K. Genetic variation of Avicennia marina (Forsk.) Vierh. (Avicenniaceae) in Vietnam revealed by microsatellite and AFLP markers. Genes Genet. Syst. 2003, 78:399-407.
22. Gilman E.L., Ellison J., Duke N.C., Field C. Threats to mangroves from climate change and adaptation options: a review. Aquat. Bot. 2008, 89:237-250.
23. Goudet J. FSTAT, A Program to Estimate and Test Gene Diversities and Fixation Indices 2001, Institut d'Ecologie, Bâtiment de Biologie Université de Lausanne, Switzerland.
24. Hayhoe K., Cayan D., Field C.B., Frumhoff P.C., Maurer E.P., Miller N.L., Moser S.C., Schneider S.H., Cahill K.N., Cleland E.E., Dale L., Drapek R., Hanemann R.M., Kalkstein L.S., Lenihan J., Lunch C.K., Neilson R.P., Sheridan S.C., Verville J.H. Emissions pathways, climate change, and impacts on California. Proc. Natl. Acad. Sci. 2004, 101:12422-12427.
25. Lavaniegos B.E., Gómez-Gutiérrez J., Lara-Lara J.R., Hernández-Vázquez S. Long-term changes in zooplankton volumes in the California current system-the Baja California region. Mar. Ecol. Prog. Ser. 1998, 169:55-64.
26. Lewis, P., Zaykin, D., 2001. Genetic Data Analysis: computer program for the analysis of allelic data.
27. Loarie S.R., Carter B.E., Hayhoe K., McMahon S., Moe R., Knight C.A., Ackerly D.D. Climate change and the future of California's endemic flora. PLoS ONE 2008, 3:e2502.
28. López-Vivas, J., Muñiz-Salazar, R., Pacheco-Ruiz, I., Riosmena-Rodriguez, R., Zertuche-González, J., Yarish, C., Endemics species of Pyropia (Rhodophyta) along the Gulf of California, Mexico. J. Appl. Phycol., submitted for publication.
29. Maguire T.L., Saenger P., Baverstocks P., Henry R. Microsatellite analysis of genetic structure in the mangrove species Avicennia marina (Forsk) Vierh. (Avicenniaceae). Mol. Ecol. 2000, 9:1853-1862.
30. Mallet J. Hybridization as an invasion of the genome. Trends Ecol. Evol. 2005, 20:229-237.
31. Marinone S.G. A three-dimensional model of the mean and seasonal circulation of the Gulf of California. J. Geophys. Res. 2003, 108:3325-3336.
32. Michalakis Y., Excoffier L. A genetic estimation of population subdivision using distances between alleles with special interest to microsatellite loci. Genetics 1996, 142:1061-1064.
33. Muñiz-Salazar R., Talbot S.L., Sage G.K., Ward D.H., Cabello-Pasini A. Population genetic structure of annual and perennial populations of Zostera marina L. along the Pacific coast of Baja California and the Gulf of California. Mol. Ecol. 2005, 14:711-722.
34. Muñiz-Salazar R., Talbot S.L., Sage G.K., Ward D.H., Cabello-Pasini A. Genetic structure of eelgrass Zostera marina meadows in an enbayment with restricted water flow. Mar. Ecol. Prog. Ser. 2006, 309:107-116.
35. Nettel A., Dodd R.S., Afzal-Rafii Z., Tovilla-Hernández C. Genetic diversity enhanced by ancient introgression and secondary contact in East Pacific black mangroves. Mol. Ecol. 2008, 17:2680-2690.
36. Otha J., Kimura M. A model of mutation appropriate to estimate the number of electrophoretically detectable alleles in a finite population. Genet. Res. 1973, 22:201-204.
37. Pacheco-Ruiz I., Zertuche-Gonzalez J.A., Meling-Lopez A.E., Riosmena-Rodriguez R., Orduña-Rojas J. El límite geográfico de Rhizophora mangle para el Golfo de California. Cienc. Mar. 2006, 28:19-22.
38. Pil M.W., Boeger M.R.T., Muschner V.C., Pie M.R., Ostrensky A., Boeger W.A. Postglacial north-south expansion of populations of Rhizophora mangle (Rhizophoraceae) along the Brazilian coast revealed by microsatellite analysis. Am. J. Bot. 2011, 98:1031-1039.
39. Pritchard J.K., Stephens M., Donelly P. Inference of population structure using multilocus genotype data. Genetics 2000, 155:945-959.
40. Raymond M., Rousset F. GENEPOP (v 1.2): population genetics software for exact test and ecumenecism. J. Hered. 1995, 86:248-249.
41. Rosero-Galindo C., Gaitan-Solis E., Cárdenas-Henao H., Tohme J., Toro-Perea N. Polymorphic microsatellites in a mangrove species, Rhizophora mangle L. (Rhizophoraceae). Mol. Ecol. Notes 2002, 2:281-283.
42. Rousset F. GENEPOP 007: a complete re-implementation of the GENEPOP software for Windows and Linux. Mol. Ecol. Resour. 2008, 8:281-283.
43. Rull V. Evolución de los manglares Neotropicales: La crisis del Eoceno. Interciencia 1998, 23:255-262.
44. Santamaría-Del ángel E., álvarez-Borrego S., Muller Kager F. Regiones biogeográficas del Golfo de California basadas en las imágenes del Coastal Zone Color Scanner. Temas de oceanografía biológica en México 1999, 63-83. Universidad Autónoma de Baja California. F. González-Farías, J. De la Rosa-Vélez (Eds.).
45. Schramm-Urrutia Y. Estructura Genética y Filogeografía del Lobo Marino de California (Zalophus californianus californianus) en Aguas Adyacentes a la Península de Baja California, México. Ciencias Marinas 2002, Universidad Autónoma de Baja California, Ensenada, Baja California.
46. Stepien C.A., Rosenblatt R.H., Bargmeyer B.A. Phylogeography of the spotted sand bass, Paralabrax maculatofasciatus: divergence of Gulf of California and Pacific coast populations. Evolution 2001, 55:1852-1862.
47. Terry A., Bucciarelli G., Bernardi G. Restricted gene flow and incipient speciation in Disjunct Pacific Ocean and Sea of Cortez Populations of a Reef Fish Species, Girella nigricans. Evolution 2000, 54:652-659.
48. Tomlinson P.B. The Botany of Mangroves 1994, Cambridge University Press, Cambridge, UK.
49. Triest L. Molecular ecology and biogeography of mangrove trees towards conceptual insights on gene flow and barriers: a review. Aquat. Bot. 2008, 89:138-154.
50. Weir B.S., Cockerham C.C. Estimating F-statistics for the analysis of population structure. Evolution 1984, 38:1358-1370.