Potential of fungi as category i Consolidated BioProcessing organisms for cellulosic ethanol production

Renewable and Sustainable Energy Reviews

Volumn 16, Issue 5, 2012, Pages 3286-3301

  Amore, Antonella ^a   Faraco, Vincenza ^a  

^a UNIVERSITY OF NAPLES FEDERICO II   (Italy)

Author keywords

Cellulases; Cellulolytic fungi; Cellulosome; Consolidated BioProcessing; Ethanologenesis

Indexed keywords

CELLULASES; CELLULOLYTIC FUNGUS; CELLULOSOMES; CONSOLIDATED BIOPROCESSING; ETHANOLOGENESIS;

BACTERIA; CELLULOSE; CELLULOSIC ETHANOL; LIGNIN; SACCHARIFICATION;

FUNGI;

EID: 84858712228     PISSN: 13640321     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.rser.2012.02.050     Document Type: Review

References (149)

1. M. Balat Global bio-fuel processing and production trends Energy Explor Exploit 25 2007 195 218
2. L.R. Lynd, E. Larson, N. Greene, M. Laser, J. Sheehan, and B.E. Dale The role of biomass in America's energy future: framing the analysis Biofuels Bioprod Bioref 3 2009 113 123
3. A. Margeot, B. Hahn-Hagerdal, M. Edlund, R. Slade, and F. Monot New improvements for lignocellulosic ethanol Curr Opin Biotechnol 20 2009 372 380
4. V. Faraco, and Y. Hadar The potential of lignocellulosic ethanol production in the Mediterranean Basin Renew Sust Energy Rev 15 2010 252 266
5. D.G. Olson, J.E. McBride, A. Joe Shaw, and L.R. Lynd Recent progress in consolidated bioprocessing Curr Opin Biotechnol 23 2011 1 10
6. J.G. Elkins, B. Raman, and M. Keller Engineered microbial systems for enhanced conversion of lignocellulosic biomass Curr Opin Biotechnol 21 2010 657 662
7. D.C. la Grange, R. den Haan, and W.H. van Zyl Engineering cellulolytic ability into bioprocessing organisms Appl Microbiol Biotechnol 87 2010 1195 1208
8. T. Hasunuma, and A. Kondo Development of yeast cell factories for consolidated bioprocessing of lignocellulose to bioethanol through cell surface engineering Biotechnol Adv 2011 http://dx.doi.org/10.1016/j.biotechadv.2011.10. 011
9. M.P. Taylor, K.L. Eley, S. Martin, M.I. Tuffin, S.G. Burton, and D.A. Cowan Thermophilic ethanologenesis: future prospects for second-generation bioethanol production Trends Biotechnol 27 2009 398 405
10. A. Schuster, and M. Schmoll Biology and biotechnology of Trichoderma Appl Microbiol Biotechnol 87 2010 787 799
11. A. Singh, P.K.R. Kumar, and K. Schugerl Bioconversion of cellulosic materials to ethanol by filamentous fungi Adv Biochem Eng Biotechnol 45 1992 29 55
12. C.D. Skory, S.N. Freer, and R.J. Bothast Screening for ethanol producing filamentous fungi Biotechnol Lett 19 1997 203 206
13. D.M. Stevenson, and P.J. Weimer Isolation and characterization of a Trichoderma strain capable of fermenting cellulose to ethanol Appl Microbiol Biotechnol 59 2002 721 726
14. R. Kumar, S. Singh, and O.V. Singh Bioconversion of lignocellulosic biomass: biochemical and molecular perspectives J Ind Microbiol Biotechnol 35 2008 377 391
15. N. Aro, T. Pakula, and M. Penttila Transcriptional regulation of plant cell wall degradation by filamentous fungi FEMS Microbiol Rev 29 2005 719 739
16. D. Martinez, R.M. Berka, B. Henrissat, M. Saloheimo, M. Arvas, and S.E. Baker Genome sequencing and analysis of the biomass-degrading fungus Trichoderma reesei (syn Hypocrea jecorina) Nat Biotechnol 26 2008 553 560
17. B.L. Cantarel, P.M. Coutinho, C. Rancurel, T. Bernard, V. Lombard, and B. Henrissat The Carbohydrate-Active EnZymes database (CAZy): an expert resource for Glycogenomics Nucleic Acids Res 37 2009 233 238
18. V. Seidl, C. Gamauf, I.S. Druzhinina, B. Seiboth, L. Hartl, and C.P. Kubicek The Hypocrea jecorina (Trichoderma reesei) hypercellulolytic mutant RUT C30 lacks a 85 kb (29 gene-encoding) region of the wild-type genome BMC Genomics 9 2008 327 341
19. S. Le Crom, W. Schackwitz, L. Pennacchio, J.K. Magnuson, D.E. Culley, and J.R. Collett Tracking the roots of cellulase hyperproduction by the fungus Trichoderma reesei using massively parallel DNA sequencing Proc Natl Acad Sci USA 106 2009 16151 16156
20. M. Vitikainen, M. Arvas, T. Pakula, M. Oja, M. Penttilä, and M. Saloheimo Array comparative genomic hybridization analysis of Trichoderma reesei strains with enhanced cellulase production properties BMC Genomics 11 2010 441 456
21. M. Schmoll, and C.P. Kubicek Regulation of Trichoderma cellulase formation: lessons in molecular biology from an industrial fungus. A review Acta Microbiol Immunol Hung 50 2-3 2003 125 145
22. M. Schmoll, U.E. Esquivel-Naranjo, and A. Herrera-Estrella Trichoderma in the light of day - physiology and development Fungal Genet Biol 47 2010 909 916
23. C.P. Kubicek, M. Mikus, A. Schuster, M. Schmoll, and B. Seiboth Metabolic engineering strategies for the improvement of cellulose production by Hypocrea jecorina Biotechnol Biofuels 2 2009 19 32
24. P. Bansal, M. Hall, M.J. Realff, J.H. Lee, and A.S. Bommarius Modeling cellulase kinetics on lignocellulosic substrates Biotechnol Adv 27 2009 833 848
25. H. Nakazawa, K. Okada, T. Onodera, W. Ogasawara, H. Okada, and Y. Morikawa Directed evolution of endoglucanase III (Cel12A) from Trichoderma reesei Appl Microbiol Biotechnol 83 2009 649 657
26. F. Gruber, J. Visser, C.P. Kubicek, and L.H. de Graaff The development of a heterologous transformation system for the cellulolytic fungus Trichoderma reesei based on a pyrG-negative mutant strain Curr Genet 18 1990 71 76
27. Y.H. Zhong, X.L. Wang, T.H. Wang, and Q. Jiang Agrobacterium-mediated transformation (AMT) of Trichoderma reesei as an efficient tool for random insertional mutagenesis Appl Microbiol Biotechnol 73 2006 1348 1354
28. V.S.J. Te'o, P.L. Bergquist, and K.M.H. Nevalainen Biolistic transformation of Trichoderma reesei using the Bio-Rad seven barrels Hepta Adaptor system J Microbiol Methods 51 2002 393 399
29. R.L. Mach, M. Schindler, and C.P. Kubicek Transformation of Trichoderma reesei based on hygromycin B resistance using homologous expression signals Curr Genet 25 1994 567 570
30. C.K. Peterbauer, E. Heidenreich, R.T. Baker, and C.P. Kubicek Effect of benomyl and benomyl resistance on cellulase formation by Trichoderma reesei and Trichoderma harzianum Can J Microbiol 38 1992 1292 1297
31. A. Schuster, C.P. Kubicek, M.A. Friedl, I.S. Druzhinina, and M. Schmoll Impact of light on Hypocrea jecorina and the multiple cellular roles of ENVOY in this process BMC Genomics 8 2007 449 465
32. M. Penttila, H. Nevalainen, M. Ratto, E. Salminen, and J. Knowles A versatile transformation system for the cellulolytic filamentous fungus Trichoderma reesei Gene 61 1987 155 164
33. Z. Guangtao, B. Seiboth, C. Wen, Z. Yaohua, L. Xian, and T. Wang A novel carbon source-dependent genetic transformation system for the versatile cell factory Hypocrea jecorina (anamorph Trichoderma reesei) FEMS Microbiol Lett 303 1 2010 26 32
34. Z. Guangtao, L. Hartl, A. Schuster, S. Polak, M. Schmoll, and T. Wang Gene targeting in a nonhomologous end joining deficient Hypocrea jecorina J Biotechnol 139 2009 146 151
35. V. Seidl, C. Seibel, C.P. Kubicek, and M. Schmoll Sexual development in the industrial workhorse Trichoderma reesei Proc Natl Acad Sci USA 106 2009 13909 13914
36. Q. Xu, A. Singh, and M.E. Himmel Perspectives and new directions for the production of bioethanol using consolidated bioprocessing of lignocellulose Curr Opin Biotechnol 20 2009 364 371
37. M. Schmoll The information highways of a biotechnological workhorse - signal transduction in Hypocrea jecorina BMC Genomics 9 2008 430 454
38. E.D. Bonaccorsi, A.J.S. Ferreira, F.S. Chambergo, A.S.P. Ramos, M.C. Mantovani, and J.P.S. Farah Transcriptional response of the obligatory aerobe Trichoderma reesei to hypoxia and transient anoxia: implications for energy production and survival in the absence of oxygen Biochemistry 45 2006 3912 3924
39. R.P. de Vries, and J. Visser Aspergillus enzymes involved in the degradation of plant cell wall polysaccharides Microbiol Mol Biol Rev 65 2001 497 522
40. M.F. Jahromi, J.B. Liang, M. Rosfarizan, Y.M. Goh, P. Shokryazdan, and Y.W. Ho Efficiency of rice straw lignocelluloses degradability by Aspergillus terreus ATCC 74135 in solid state fermentation Afr J Biotechnol 10 21 2011 4428 4435
41. S. Ali, and A. Sayed Regulation of the cellulase biosynthesis in Aspergillus terreus World J Microbiol Biotechnol 8 1 1992 73 75
42. E.A. Ximenes, C.R. Felix, and C.J. Ulhoa Production of cellulases by Aspergillus fumigatus and characterization of one β-glucosidase Curr Microbiol 32 1996 119 123
43. J.B. Parry, J.C. Stewart, and J. Heptinstall Purification of the major endoglucanase from Aspergillus fumigatus Fresenius Biochem J 213 1983 437 444
44. G.D. Robson, J. Huang, J. Wortman, and D.B. Archer A preliminary analysis of the process of protein secretion and the diversity of putative secreted hydrolases encoded in Aspergillus fumigatus: insights from the genome Med Mycol 43 Suppl. 1 2005 41 47
45. M.A.M. Abo-State, A.I. Hammad, M. Swelim, and R.B. Gannam Enhanced production of cellulase(s) by Aspergillus spp. isolated from agriculture wastes by solid state fermentation Am-Eurasian J Agric Environ Sci 8 4 2010 402 410
46. D. Lubertozzi, J.D. Keasling, and Developing Aspergillus as a host for heterologous expression Biotechnol Adv 27 2009 53 75
47. A.L. Dawe, D.A. Willins, and N.R. Morris Increased transformation efficiency of Aspergillus nidulans protoplasts in the presence of dithiothreitol Anal Biochem 283 1 2000 111 112
48. V. Meyer, B. Wu, and A.F.J. Ram Aspergillus as a multi-purpose cell factory: current status and perspectives Biotechnol Lett 33 2011 469 476
49. S. Pushalkar, and K.K. Rao Short communication: ethanol fermentation by a cellulolytic fungus Aspergillus terreus World J Microbiol Biotechnol 14 1998 289 291
50. S. Masuo, Y. Terabayashi, M. Shimizu, T. Fujii, T. Kitazume, and N. Takaya Global gene expression analysis of Aspergillus nidulans reveals metabolic shift and transcription suppression under hypoxia Mol Genet Genomics 284 2010 415 424
51. L.V. Roze, A. Chanda, M. Laivenieks, R.M. Beaudry, K.A. Artymovich, and A.V. Koptina Volatile profiling reveals intracellular metabolic changes in Aspergillus parasiticus: veA regulates branched chain amino acid and ethanol metabolism BMC Biochem 11 2010 33 47
52. G. Ramanathan, S. Banupriya, and D. Abirami Production and optimization of cellulase from Fusarium oxysporum by submerged fermentation J Sci Ind Res India 69 2010 454 459
53. A. Lotfi, G. M.A.Tajick Ghanbary, and A. Ranjbar AsgharzadehScreening of some soil Fusaria for cellulose activity and partial purification of cellulose J Biodivers Ecol Sci 1 2011 123 132
54. Y. Qin, H. He, N. Li, M. Ling, and Z. Liang Isolation and characterization of a thermostable cellulase-producing Fusarium chlamydosporum World J Microbiol Biotechnol 26 2010 1991 1997
55. G.E. Kikot, R.A. Hours, and T.M. Alconada Extracellular Enzymes of Fusarium graminearum Isolates Braz Arch Biol Technol 53 2010 779 783
56. C. Xiros, P. Katapodis, and P. Christakopoulos Evaluation of Fusarium oxysporum cellulolytic system for an efficient hydrolysis of hydrothermally treated wheat straw Bioresour Technol 100 2009 5362 5365
57. C. Xiros, P. Katapodis, and P. Christakopoulos Factors affecting cellulose and hemicellulose hydrolysis of alkali treated brewers spent grain by Fusarium oxysporum enzyme extract Bioresour Technol 102 2 2011 1688 1696
58. A. Diolez, T. Langin, C. Gerlinger, Y. Brygoo, and M.-J. Daboussi The nia gene of Fusarium oxysporum: isolation, sequence and development of a homologous transformation system Gene 131 1993 61 67
59. M.D. Gareia-Pedrajas, and M.I.G. Roncero A homologous and self replicating system for efficient transformation of Fusarium oxysporum Curr Genet 29 1996 191 198
60. E.D. Mullins, X. Chen, P. Romaine, R. Raina, D.M. Geiser, and S. Kang Agrobacterium-mediated transformation of Fusarium oxysporum: an efficient tool for insertional mutagenesis and gene transfer Phytopathology 91 2001 173 180
61. C.H. Khang, S.-Y. Park, Y.-H. Lee, and S. Kang A dual selection based, targeted gene replacement tool for Magnaporthe grisea and Fusarium oxysporum Fungal Genet Biol 42 2005 483 492
62. P. Christakopoulos, D. Kekos, and B.J. Macris Direct cultivation of cellulose to ethanol by Fusarium oxysporum Enzyme Microbiol Technol 11 1989 236 239
63. P. Christakopoulos, D. Koullas, D. Kekos, E. Koukios, and B.J. Macris Direct conversion of straw to ethanol by Fusarium oxysporum: effect of cellulose crystallinity Enzyme Microbiol Technol 13 1991 272 274
64. P. Christakopoulos, D. Kekos, B.J. Macris, M. Claeyssens, and M.K. Bhat Purification and mode of action of a low molecular mass endo-1,4-β-d- glucanase from Fusarium oxysporum J Biotechnol 39 1995 85 93
65. P. Christakopoulos, D. Kekos, B.J. Macris, M. Claeyssens, and M.K. Bhat Purification and characterisation of a non-randomly acting endo-1,4-β-d- glucanase from the culture filtrates of Fusarium oxysporum Arch Biochem Biophys 316 1995 428 433
66. P. Christakopoulos, D. Kekos, B.J. Macris, M. Claeyssens, and M.K. Bhat Purification and characterization of a major xylanase with cellulase and transferase activities from Fusarium oxysporum Carbohydr Res 289 1996 91 104
67. P. Christakopoulos, B. Nerinckx, D. Kekos, B.J. Macris, and M. Claeyssens Purification and characterization of two low molecular mass alkaline xylanases from Fusarium oxysporum F3 J Biotechnol 51 1996 181 189
68. P. Christakopoulos, B. Nerinckx, D. Kekos, B.J. Macris, and M. Claeyssens The alkaline xylanase III from Fusarium oxysporum belongs to family F Carbohydr Res 302 1997 191 195
69. G. Panagiotou, S.G. Villas-Boas, P. Christakopoulos, J. Nielsen, and L. Olsson Intracellular metabolite profiling of Fusarium oxysporum converting glucose to ethanol J Biotechnol 115 2005 425 434
70. C. Xiros, and P. Christakopoulos Enhanced ethanol production from brewer's spent grain by a Fusarium oxysporum consolidated system Biotechnol Biofuels 2 1 2009 4 15
71. G.E. Anasontzis, A. Zerva, P.M. Stathopoulou, K. Haralampidis, G. Diallinas, and A.D. Karagouni Homologous overexpression of xylanase in Fusarium oxysporum increases ethanol productivity during consolidated bioprocessing (CBP) of lignocellulosics J Biotechnol 152 2011 16 23
72. J.X. Fan, X.X. Yang, J.Z. Song, X.M. Huang, Z.X. Cheng, and L. Yao Heterologous expression of transaldolase gene Tal from Saccharomyces cerevisiae in Fusarium oxysporum for enhanced bioethanol production Appl Biochem Biotechnol 164 7 2011 1023 1036
73. J.X. Fan, Q. Yang, Z.H. Liu, X.M. Huang, J.Z. Song, and Z.X. Chen The characterization of transaldolase gene tal from Pichia stipitis and its heterologous expression in Fusarium oxysporum Mol Biol Rep 38 3 2011 1831 1840
74. K. Murashima, T. Nishimura, Y. Nakamura, J. Koga, T. Moriya, and N. Sumida Purification and characterization of new endo-1,4-b-d-glucanases from Rhizopus oryzae Enzyme Microb Technol 30 2002 319 326
75. Y. Takii, K. Ikeda, C. Sato, M. Yano, T. Sato, and K. Hiroshi Production and characterization of β-glucosidase from Rhizopus oryzae MIBA348 J Biol Macromol 5 2005 11 16
76. E. Battaglia, I. Benoit, J. van den Brink, A. Wiebenga, P.M. Coutinho, and B. Henrissat Carbohydrate-active enzymes from the zygomycete fungus Rhizopus oryzae: a highly specialized approach to carbohydrate degradation depicted at genome level BMC Genomics 12 2011 38 49
77. M. Karmakar, and R.R. Ray Statistical optimization of FPase production from water hyacinth using Rhizopus oryzae PR7 J Biochem Technol 3 1 2011 225 229
78. S. Mukherjee, M. Karmakar, and R.R. Ray Production of extra cellular exoglucanase by Rhizopus oryzae from submerged fermentation of agro wastes Recent Res Sci Technol 3 3 2011 69 75
79. B. Tang, H. Pan, Q. Zhang, and L. Ding Cloning and expression of cellulase gene EG1 from Rhizopus stolonifer var. reflexus TP-02 in Escherichia coli Bioresour Technol 100 2009 6129 6132
80. Y. Fujio, M. Ogata, and S. Ueda Ethanol fermentation of raw cassava starch with Rhizopus koji in a gas circulation type fermentor Biotechnol Bioeng 27 1985 1270 1273
81. R. Millati, L. Edebo, and M.J. Taherzadeh Performance of Rhizopus, Rhizomucor and Mucor in ethanol production from glucose, xylose, and wood hydrolyzates Enzyme Microb Technol 36 2005 294 300
82. A.O. Büyükkileci, H. Hamamci, and M. Yucel Lactate and ethanol productions by Rhizopus oryzae ATCC 9363 and activities of related pyruvate branch point enzymes J Biosci Bioeng 5 2006 464 466
83. L.-S. Wang, X.-Y. Ge, and W.-G. Zhang Improvement of ethanol yield from raw corn flour by Rhizopus sp World J Microbiol Biotechnol 23 2007 461 465
84. S. Abedinifar, K. Karimi, M. Khanahmadi, and M.J. Taherzadeh Ethanol production by Mucor indicus and Rhizopus oryzae from rice straw by separate hydrolysis and fermentation Biomass Bioenerg 33 5 2009 828 833
85. N. Thongchul, S. Navankasattusas, and S.T. Yang Production of lactic acid and ethanol by Rhizopus oryzae integrated with cassava pulp hydrolysis Bioprocess Biosyst Eng 33 2010 407 416
86. J.-H. Song, J.-H. Kim, B.-H. Ahn, and J.-S. Lee Screening of functional Rhizopus stolonifer for alcohol fermentation and production of high quality Korean traditional rice wine Mycobiology 38 2010 122 127
87. A.H. Gheinani, N.H. Jahromi, E.F. Lagerstedt, and M.J. Taherzadeh RNA silencing of lactate dehydrogenase gene in Rhizopus oryzae J RNAi Gene Silencing 7 2011 443 448
88. C.M. Gowena, and S.S. Fong Exploring biodiversity for cellulosic biofuel production Chem Biodivers 7 2010 1086 1097
89. A.P.J. Trinci, S.E. Lowe, A. Milne, and M.K. Theodorou Growth and survival of rumen fungi Biosystems 21 1988 357 363
90. D.J.S. Barr, L.J. Yanke, H.D. Bae, T.A. McAllister, and K.J. Cheng Contributions on the morphology and taxonomy of some rumen fungi from Canada Mycotaxon 54 1995 203 214
91. A.P.J. Trinci, D.R. Davies, K. Gull, M.I. Lawrence, B.B. Nielsen, and A. Rickers Anaerobic fungi in herbivorous animals Mycol Res 96 1994 129 152
92. D.A. Wubah Anaerobic zoosporic fungi associated with animals G.M. Mueller, G.F. Bills, M.S. Foster, Biodiversity of fungi: inventory and monitoring methods 2004 Elsevier Academic Press Burlington 501 510
93. W.S. Borneman, D.E. Akin, and L.G. Ljungdahl Fermentation products and plant cell wall-degrading enzymes produced by monocentric and polycentric anaerobic ruminal fungi Appl Environ Microb 55 1989 1066 1073
94. T. Bauchop, and D.O. Mountford Cellulose fermentation by a rumen anaerobic fungus in both the absence and the presence of rumen bacteria Appl Environ Microbiol 42 1981 1103 1110
95. L.G. Ljungdahl The cellulase/hemicellulase system of the anaerobic fungus Orpinomyces PC-2 and aspects of its applied use Ann N Y Acad Sci 1125 2008 308 321
96. E.A. Bayer, J.-P. Belaich, Y. Shoham, and R. Lamed The Cellulosomes: multienzyme machines for degradation of plant cell wall poly saccharides Annu Rev Microbiol 58 2004 521 554
97. A.L. Carvalho, F.M.V. Dias, J.A.M. Prates, T. Nagy, H.J. Gilbert, and G.J. Davies Cellulosome assembly revealed by the crystal structure of the cohesin-dockerin complex Proc Natl Acad Sci USA 100 2003 13809 13814
98. S. Raghothama, R.Y. Eberhardt, P. Simpson, D. Wigelsworth, P. White, and G.P. Hazlewood Characterization of a cellulosome dockerin domain from the anaerobic fungus Piromyces equi Nat Struct Biol 8 2001 775 778
99. P.J.M. Steenbakkers, X.-L. Li, E.A. Ximenes, J.G. Arts, H. Chen, and L.G. Ljungdahl Non-catalytic docking domains of cellulosomes of anaerobic bacteria J Bacteriol 183 2001 5325 5333
100. C.A. Wilson, and T.M. Wood The anaerobic fungus Neocallimastix frontalis: isolation and properties of a cellulosome-type enzyme fraction with the capacity to solubilize hydrogen-bond-ordered cellulose Appl Microbiol Biotechnol 37 1992 125 129
101. L. Zhou, G. Xue, C.G. Orpin, G.W. Black, H.J. Gilbert, and G.P. Hazlewood Intronless celB from the anaerobic fungus Neocallimastix patriciarum encodes a modular family A endoglucanase Biochem J 297 1994 359 364
102. J.H. Lui, L.B. Selinger, Y.J. Hu, M.M. Moloney, K.J. Cheng, and K.A. Beauchemin An endoglucanase from the anaerobic fungus Orpinomyces joyonii: characterization of the gene and its product Can J Microbiol 43 1997 477 485
103. X. Qui, B. Selinger, L.-J. Yanke, and K.-J. Cheng Isolation and analysis of two cellulase cDNAs from Orpinomyces joyonii Gene 245 2000 119 126
104. B.R. Ali, L. Zhou, F.M. Graves, R.B. Freedman, G.W. Black, and H.J. Gilbert Cellulases and hemicellulases of the anaerobic fungus Piromyces constitute a multiprotein cellulose-binding complex and are encoded by multigene families FEMS Microbiol Lett 125 1995 15 21
105. C.A. Wilson, S.I. McCrae, and T.M. Wood Characterization of a β-d-glucosidase from the anaerobic fungus Neocallimastix frontalis with particular reference to attack on cello-oligosaccharides J Biotechnol 37 1994 217 227
106. P.J. Steenbakkers, H.R. Harhangi, M.W. Bosscher, M.M. van der Hooft, J.T. Keltjens, and C. van der Drift Beta-Glucosidase in cellulosome of the anaerobic fungus Piromyces sp. strain E2 is a family 3 glycoside hydrolase Biochem J 370 2003 963 970
107. H. Chen, X.-L. Li, and L.G. Ljungdahl Isolation and properties of an extracellular β-glucosidase from the rumen fungus Orpinomyces sp. Strain PC-2 Appl Environ Microbiol 60 1994 64 70
108. H. Chen, E.A. Ximenes, X.-L. Li, and L.G. Ljungdahl Glucose production by Trichoderma reesei cellulase is enhanced by a recombinant Orpinomyces betaglucosidase K. Ohmiya, K. Sakka, S. Karita, Y. Kobayashi, S. Karita, T. Kimura, Genetics, biochemistry and ecology of cellulose degradation. 1999 Uni Publishers Co., Ltd. Tokyo 173 181
109. W.S. Borneman, L.G. Ljungdahl, R.D. Hartley, and D.E. Akin Feruloyl and p-coumaroyl esterases from the anaerobic fungus Neocallimastix strain MC-2: properties and functions in plant cell wall degradation M.P. Coughlan, G.P. Hazlewood, Hemicellulose and Hemicellulases 1993 Portland Press London, UK p. 85-102
110. G.W. Black, G.P. Hazlewood, G.-P. Xue, C.G. Orpin, and H.J. Gilbert Xylanase B from Neocallimastix patriciarum contains a noncatalytic 455-residue linker sequence comprised of 57 repeats of an octapeptide Biochem J 299 1994 381 387
111. H.J. Gilbert, G.P. Hazlewood, J.I. Laurie, C.G. Orpin, and G.P. Xue Homologues catalytic domains in a rumen fungal xylanase: evidence for gene duplication and prokaryotic origin Mol Microbiol 59 1992 2065 2072
112. J.H. Lui, L.B. Selinger, C.F. Tsai, and K.J. Cheng Characterization of a Neocallimastix patriciarum xylanase gene and its product Can J Microbiol 45 1999 970 974
113. B.G. de Segura, R. Durand, and M. Fevre Multiplicity and expression of xylanases in the rumen fungus of Neocallimastix frontalis FEMS Microbiol Lett 164 1998 47 53
114. B.G. de Segura, and M. Fevre Purification and characterization of two 1,4-β-xylan endohydrolases from the rumen fungus Neocallimastix frontalis Appl Environ Microbiol 59 1993 3654 3660
115. R. Durand, C. Rascle, and M. Fevre Molecular characterization of xyn3, a member of the endoxylanase multigene family of the rumen anaerobic fungus Neocallimastix frontalis Curr Genet 30 1996 531 540
116. D.L. Blum, X.-L. Li, H. Chen, and L.G. Ljungdahl Characterization of an acetyl xylan esterase from the anaerobic fungus Orpinomyces sp. Strain PC-2 Appl Environ Microbiol 65 1999 3990 3995
117. B.P. Dalrymple, D.H. Cybinski, I. Layton, C. McSweeney, G.-P. Xue, and Y.J. Swadling Three Neocallimastix patriciarum esterases associated with the degradation of complex polysaccharides are members of a new family of hydrolases Microbiology 143 1997 2605 2614
118. D.H. Cybinski, I. Layton, J.B. Lowry, and B.P. Dalrymple An acetylxylan esterase and a xylanase expressed from genes cloned from the ruminal fungus Neocallimastix patriciarum act synergistically to degrade acetylated xylans Appl Microbiol Biotechnol. 52 2 1999 221 225
119. E.A. Ximenes, H. Chen, I.A. Kataeva, M.A. Cotta, C.R. Felix, and L.G. Ljungdahl A mannanase, ManA, of the polycentric anaerobic fungus Orpinomyces sp. Strain PC-2 has carbohydrate binding and docking modules Can J Microbiol 51 2005 559 568
120. S.J. Millward-Sadler, J. Hall, G.W. Black, G.P. Hazlewood, and H.J. Gilbert Evidence that the Piromyces gene family encoding endo-1,4-mannanases arose through gene duplication FEMS Microbiol Lett 141 1996 183 188
121. A.C.J. Freelove, D.N. Bolam, P. White, G.P. Hazlewood, and H.J. Gilbert A novel carbohydrate-binding protein is a component of the plant cell wall-degrading complex of Piromyces equi J Biol Chem 276 2001 43010 43017
122. H. Chen, X.-L. Li, and L.G. Ljungdahl Sequencing of a 1,3-1,4-β-d-glucanase (lichenase) from the anaerobic fungus Orpinomyces strain PC-2: properties of the enzyme expressed in Escherichia coli and evidence that the gene has a bacterial origin J Bacteriol 179 1997 6028 6034
123. D. Barnard, A. Casanueva, M. Tuffin, and D. Cowan Extremophiles in biofuel synthesis Environ Technol 31 2010 871 888
124. A. Grassick, P. Murray, R. Thompson, C. Collins, L. Byrnes, and G. Birrane Three-dimensional structure of a thermostable native cellobiohydrolase, CBH IB, and molecular characterization of the cel7 gene from the filamentous fungus, Talaromyces emersonii Eur J Biochem 271 2004 4495 4506
125. P. Murray, A. Grassick, C. Laffey, M. Cuffe, T. Higgins, and A. Savage Isolation and characterization of a thermostable endo-β-glucanase active on 1,3-1,4-β-d-glucans from the aerobic fungus Talaromyces emersonii CBS 814.70 Enzyme Microb Technol 29 2001 90 98
126. M. Tuohy, J. Walsh, P. Murray, M. Claeyssens, M. Cuffe, and A. Savage Kinetic parameters and mode of action of the cellobiohydrolases produced by Talaromyces emersonii Biochem Biophys Acta 1596 2002 366 380
127. I. Gomes, J. Gomes, D.J. Gomes, and W. Steiner Simultaneous production of high activities of thermostable endoglucanase and β-d-glucosidase by the wild thermophilic fungus Thermoascus aurantiacus Appl Microbiol Biotechnol 53 2000 461 468
128. N. Parry, D. Beever, E. Owen, W. Nerinckx, M. Claeyssens, and J. Van Beeumen Biochemical characterization and mode of action of a thermostable endoglucanase purified from Thermoascus aurantiacus Arch Biochem Biophys 404 2002 243 253
129. M. Shepherd, C. Tong, and A. Cole Substrate specificity and mode of action of the cellulases from the thermophilic fungus Thermoascus aurantiacus Biochem J 193 1981 67 84
130. P.D. Millner Radial growth responses to temperature by 58 Chaetomium species and some taxonomic relationships Mycologia 69 1977 492 502
131. S. Roy, S. Raha, S. Dey, and S. Chakrabarty Effect of temperature on the production and location of cellulose components in Myceliopthora thermophila D-14 (ATCC 48104) Enzyme Microb Technol 12 1990 710 713
132. R. Maheshwari, G. Bharadwaj, and M. Bhat Thermophilic fungi: their physiology and enzymes Microbiol Mol Biol Rev 64 2000 461 488
133. P.G. Murray, C.M. Collins, A. Grassick, and M.G. Tuohy Molecular cloning, transcriptional, and expression analysis of the first cellulase gene (cbh2), encoding cellobiohydrolase II, from the moderately thermophilic fungus Talaromyces emersonii and structure prediction of the gene product Biochem Biophys Res Commun 301 2003 280 286
134. T. McCarthy, O. Hanniffy, A.V. Savage, and M.G. Tuohy Catalytic properties and mode of action of three endo-glucanases from Talaromyces emersonii on soluble β-1,4- and β-1,3;1,4-linked glucans Int J Biol Macromol 33 2003 141 148
135. T.C. McCarthy, E. Lalor, O. Hanniffy, A.V. Savage, and M.G. Tuohy Comparison of wild-type and UV-mutant β-glucanase-producing strains of Talaromyces emersonii with potential in brewing applications J Ind Microbiol Biotechnol 32 2005 125 134
136. P. Murray, N. Aro, C. Collins, A. Grassick, M. Penttilä, and M. Saloheimo Expression in Trichoderma reesei and characterisation of a thermostable family 3-glucosidase from the moderately thermophilic fungus Talaromyces emersonii Protein Expr Purif 38 2004 248 257
137. C.M. Collins, P.G. Murray, S. Denman, J.P. Morrissey, L. Byrnes, and T.T. Teeri Molecular cloning and expression analysis of two distinct β-glucosidase genes, bg1 and aven1, with very different biological roles from the thermophilic, saprophytic fungus Talaromyces emersonii Mycol Res 11 2007 840 849
138. E. O'Connell, C. Piggott, and M. Tuohy Purification of exo-1,3-beta-glucanase, a new extracellular glucanolytic enzyme from Talaromyces emersonii Appl Microbiol Biotechnol 89 3 2011 685 696
139. F.J. Reen, P.G. Murray, and M.G. Tuohy Molecular characterisation and expression analysis of the first hemicellulase gene (bxl1) encoding β-xylosidase from the thermophilic fungus Talaromyces emersonii Biochem Biophys Res Commun 305 2003 579 585
140. D.M. Waters, P.G. Murray, L.A. Ryan, E.K. Arendt, and M.G. Tuohy Talaromyces emersonii thermostable enzyme systems and their applications in wheat baking systems J Agric Food Chem 58 2010 7415 7422
141. M. Kawamori, K. Takayama, and S. Takasawa Production of ethanol from biomasses. 6. production of cellulases by a thermophilic fungus, Thermoascus aurantiacus a-131 Agric Biol Chem 51 1987 647 654
142. N.J. Parry, D.E. Beever, E. Owen, I. Vandenberghe, J. Van Beeumen, and M.K. Bhat Biochemical characterization and mechanism of action of a thermostable β-glucosidase purified from Thermoascus aurantiacus Biochem J 353 2001 117 127
143. F. Van Petegem, I. Vandenberghe, M.K. Bhat, and J. Van Beeumen Atomic resolution structure of the major endoglucanase from Thermoascus aurantiacus Biochem Biophys Res Commun 296 2002 161 166
144. J. Hong, H. Tamaki, K. Yamamoto, and H. Kumagai Cloning of a gene encoding a thermo-stable endo-beta-1,4-glucanase from Thermoascus aurantiacus and its expression in yeast Biotechnol Lett 25 2003 657 661
145. J. Hong, H. Tamaki, K. Yamamoto, and H. Kumagai Cloning of a gene encoding thermostable cellobiohydrolase from Thermoascus aurantiacus and its expression in yeast Appl Microbiol Biotechnol 63 2003 42 50
146. J. Hong, H. Tamaki, and H. Kumagai Unusual hydrophobic linker region of β-glucosidase (BGLII) from Thermoascus aurantiacus is required for hyper-activation by organic solvents Appl Microbiol Biotechnol 73 1 2006 80 88
147. J. Hong, H. Tamaki, and H. Kumagai Cloning and functional expression of thermostable β-glucosidase gene from Thermoascus aurantiacus Appl Microbiol Biotechnol 73 2007 1331 1339
148. S.P. Voutilainen, T. Puranen, M. Siika-aho, A. Lappalainen, M. Alapuranen, and J. Kallio Cloning, expression, and characterization of novel thermostable family 7 cellobiohydrolases Biotechnol Bioeng 101 2008 515 528
149. Z. Benko, E. Drahos, Z. Szengyel, T. Puranen, J. Vehmaanperä, and K. Réczey Thermoascus aurantiacus CBHI/Cel7A production in Trichoderma reesei on alternative carbon sources Appl Biochem Biotechnol 195 2007 136 140