Towards a context sensitive approach to searching information based on domain specific knowledge sources

Journal of Web Semantics

Volumn 12-13, Issue , 2012, Pages 41-52

  Dinh, Duy ^a   Tamine, Lynda ^a  

^a UNIVERSITÉ DE TOULOUSE   (France)

Author keywords

Biomedical information retrieval; Context sensitive information retrieval; Document expansion; Query expansion

Indexed keywords

BIOMEDICAL DOMAIN; BIOMEDICAL INFORMATION; BIOMEDICAL INFORMATION RETRIEVAL; BLIND FEEDBACK; CONTEXT SENSITIVE; CONTEXTUAL INFORMATION; CONTEXTUAL SEMANTIC INFORMATIONS; DOCUMENT RETRIEVAL; DOMAIN-SPECIFIC KNOWLEDGE; GENOMICS; GLOBAL CONTEXT; QUERY EXPANSION; STATISTICAL PROPERTIES; SUBCOLLECTIONS; TEST SETS; USER QUERY;

EXPANSION; SEMANTICS; TERMINOLOGY;

INFORMATION RETRIEVAL;

EID: 84858339175     PISSN: 15708268     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.websem.2011.11.009     Document Type: Article

References (38)

1. S. Abdou, and J. Savoy Searching in Medline: query expansion and manual indexing evaluation Information Processing Management 44 2008 781 789 (Pubitemid 351288469)
2. G. Amati, Probabilistic models for Information Retrieval based on Divergence from Randomness. Ph.D. thesis. Department of Computing Science, University of Glasgow, 2003.
3. A.R. Aronson, J.G. Mork, S.M.H. CW Gay, W.J. Rogers, The NLM Indexing Initiative's Medical Text Indexer, in: Proceedings of MedInfo, 2004, pp. 268-272.
4. R. Baeza-Yates, B. Ribeiro-Neto, Modern Information Retrieval, Addison Wesley, 2005.
5. M. Baziz, M. Boughanem, N. Aussenac-Gilles, C. Chrisment, Semantic cores for representing documents in IR, in: Symposium on Applied Computing, 2005, pp. 1011-1017.
6. B. Billerbeck, J. Zobel, Document expansion versus query expansion for ad-hoc retrieval, in: A. Turpin, R. Wilkinson (Eds.), Proceedings of the 10th Australasian Document Computing Symposium, Sydney, Australia, 2005, pp. 34-41.
7. R.A. Cote, Architecture of SNOMED: Its Contribution to Medical Language Processing, in: Proceedings of Annual Symposium on Computer Application in Medical Care, 1986, pp. 74-80.
8. S.J. Darmoni, S. Pereira, S. Sakji, T. Merabti, É. Prieur, M. Joubert, B. Thirion, Multiple Terminologies in a Health Portal: Automatic Indexing and Information Retrieval, in: Proceedings of Artifical Intelligence in MEdicine, 2009, pp. 255-259.
9. D. Dinh, L. Tamine, Sense-based biomedical indexing and retrieval, in: International Conference on Applications of Natural Language to Information Systems, Springer-Verlag, Cardiff, UK, 2010, pp. 24-35.
10. D. Dinh, L. Tamine. Biomedical concept extraction based on combining the content-based and word order similarities, in: Proceedings of the 2011 ACM Symposium on Applied Computing, ACM, New York, NY, USA, 2011a, pp. 1159-1163.
11. D. Dinh, L. Tamine, Combining Global and Local Semantic Contexts for Improving Biomedical Information Retrieval, in: Proceedings of the 33th European Conference on Information Retrieval, 2011b, pp. 375-386.
12. E.A. Fox, J.A. Shaw, Combination of Multiple Searches, in: Proceedings of Text REtrieval Conference, 1994, pp. 243-252.
13. K. Frantzi, S. Ananiadou, and H. Mima Automatic recognition of multi-word terms: the C-value/NC-value method International Journal on Digital Libraries 3 2000 115 130
14. R. Gaizauskas, and K. Humphreys Using a semantic network for information extraction Natural Language Engineering 3 1997 147 169
15. J. Gobeill, P. Ruch, X. Zhou, Query and document expansion with Medical Subject Headings terms at medical Imageclef 2008, in: Proceedings of the 9th Cross-language evaluation forum conference on Evaluating systems for multilingual and multimodal information access, Springer-Verlag, Berlin, Heidelberg, 2009, pp. 736-743.
16. W.R. Hersh, R.T. Bhuptiraju, L. Ross, P. Johnson, A.M. Cohen, D.F. Kraemer, TREC 2004 Genomics Track Overview, in: Proceedings of Text REtrieval Conference, 2004.
17. W.R. Hersh, A.M. Cohen, J. Yang, R.T. Bhupatiraju, P.M. Roberts, M.A. Hearst, TREC 2005 Genomics Track Overview, in: Proceedings of Text REtrieval Conference, 2005.
18. A. Hliaoutakis, K. Zervanou, and E.G.M. Petrakis The AMTEx approach in the medical document indexing and retrieval application Data Knowledge Engineering 68 2009 380 392
19. M. Krauthammer, A. Rzhetsky, et al., Using BLAST for Identifying Gene and Protein Names in Journal Articles, in: Gene, 2000, pp. 245-252. (Pubitemid 32119256)
20. D.T.H. Le, J.P. Chevallet, T.B.T. Dong, Thesaurus-based query and document expansion in conceptual indexing with UMLS, in: Proceedings of Conference on Research, Innovation and Vision for the Future, 2007, pp. 242-246. (Pubitemid 46957401)
21. Z. Lu, W. Kim, and W.J. Wilbur Evaluation of query expansion using MeSH in PubMed Information Retrieval 12 2009 69 80
22. D.I. Moldovan, and R. Mihalcea Using WordNet and lexical operators to improve internet searches IEEE Internet Computing 4 2000 34 43 (Pubitemid 30564638)
23. A. Névéol, S.E. Shooshan, S.M. Humphrey, J.G. Mork, and A.R. Aronson A recent advance in the automatic indexing of the biomedical literature Journal of BioInformatics 42 2009 814 823
24. I. Ounis, G. Amati, V. Plachouras, B. He, C. Macdonald, C. Lioma, Terrier: A High Performance and Scalable Information Retrieval Platform, in: Proceedings of SIGIR'06 Workshop on Open Source Information Retrieval (OSIR 2006), 2006.
25. S. Pereira, A. Neveol, G. Kerdelhué, E. Serrot, M. Joubert, S.J. Darmoni, Using multi-terminology indexing for the assignment of MeSH descriptors to health resources in a French online catalogue, in: AMIA Symposium, 2008, pp. 586-590.
26. S.E. Robertson, S. Walker, Hancock-M. Beaulieu, Okapi at TREC-7: Automatic Ad Hoc, Filtering, VLC and Interactive, in: Proceedings of Text REtrieval Conference, 1998, pp. 199-210.
27. J. Rocchio Relevance Feedback in Information Retrieval 1971 313 323
28. P. Ruch Automatic assignment of biomedical categories: toward a generic approach Bioinformatics 22 2006 658 664
29. G. Salton, C. Buckley, C.T. Yu, An evaluation of term dependence models in information retrieval, in: Proceedings of the 5th annual ACM conference on Research and development in information retrieval, Springer-Verlag New York, Inc., New York, NY, USA, 1982, pp. 151-173.
30. K. Spearck Jones Automatic Keyword Classification for Information Retrieval 1971 Butterworth London
31. P. Srinivasan Query expansion and MEDLINE Information Processing and Management 32 1996 431 443 (Pubitemid 126371702)
32. N. Stokes, Y. Li, L. Cavedon, and J. Zobel Exploring criteria for successful query expansion in the genomic domain Information Retrieval 12 2009 17 50
33. T. Tao, X. Wang, Q. Mei, C. Zhai, Language model information retrieval with document expansion, in: Proceedings of Conference on Association for Computational Linguistics, 2006, pp. 407-414.
34. D. Trieschnigg, Proof of Concept: Concept-based Biomedical Information Retrieval. Ph.D. thesis. University of Twente, 2010.
35. E.M. Voorhees, Query expansion using lexical semantic relations, in: Proceedings of Conference on Research and Development in Information Retrieval, Springer-Verlag New York, Inc., New York, NY, USA, 1994, pp. 61-69.
36. W. Zhou, C. Yu, N. Smalheiser, V. Torvik, J. Hong, Knowledge-intensive conceptual retrieval and passage extraction of biomedical literature, in: Proceedings of Conference on Research and Development in Information Retrieval, 2007, pp. 655-662. (Pubitemid 350165016)
37. X. Zhou, X. Hu, X. Zhang, X. Lin, I. yeol Song, Context-sensitive semantic smoothing for the language modeling approach to genomic IR, in: Proc. of Conference on Research and Development in Information Retrieval, ACM, 2006a pp. 170-177.
38. X. Zhou, X. Zhang, X. Hu, MaxMatcher: biological concept extraction using approximate dictionary lookup, in: Proceedings of the Pacific Rim International Conference on Artificial Intelligence, 2006b, pp. 1145-1149. (Pubitemid 44531927)