Knowledge-intensive conceptual retrieval and passage extraction of biomedical literature

Proceedings of the 30th Annual International ACM SIGIR Conference on Research and Development in Information Retrieval, SIGIR'07

Volumn , Issue , 2007, Pages 655-662

  Zhou, Wei ^a   Yu, Clement ^a   Smalheiser, Neil ^b   Torvik, Vetle ^b   Hong, Jie ^b  

^a 1120 Science and Engineering Offices   (United States)

^b UNIVERSITY OF ILLINOIS AT CHICAGO   (United States)

Author keywords

Biomedical documents; Document retrieval; Passage extraction

Indexed keywords

BIOMEDICAL DOCUMENTS; GENOMICS TRACK; PASSAGE EXTRACTION;

BIOMEDICAL ENGINEERING; INFORMATION RETRIEVAL SYSTEMS; KNOWLEDGE ACQUISITION; MATHEMATICAL MODELS;

FEATURE EXTRACTION;

EID: 36448977574     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1145/1277741.1277853     Document Type: Conference Paper

References (22)

1. Aronson A.R., Rindflesch T.C. Query expansion using the UMLS Metathesaurus. Proc AMIA Annu Fall Symp. 1997. 485-9.
2. Baeza-Yates R., Ribeiro-Neto B. Modern Information Retrieval. Addison-Wesley, 1999,129-131.
3. Buttcher S., Clarke C.L.A., Cormack G.V. Domain-specific synonym expansion and validation for biomedical information retrieval (MultiText experiments for TREC 2004). TREC'04.
4. Chang J.T., Schutze H., Altaian R.B. Creating an online dictionary of abbreviations from MEDLINE. Journal of the American Medical Informatics Association. 2002 9(6).
5. Church K.W., Hanks P. Word association norms, mutual information and lexicography. Computational Linguistics. 1990; 16:22, C29.
6. Fontelo P., Liu F., Ackerman M. askMEDLINE: a free-text, natural language query tool for MEDLINE/PubMed. BMC Med Inform Decis Mak. 2005 Mar 10;5(1):5.
7. Fukuda K., Tamura A., Tsunoda T., Takagi T. Toward information extraction: identifying protein names from biological papers. Pac Symp Biocomput. 1998;:707-18.
8. Hersh W.R., and etc. TREC 2006 Genomics Track Overview. TREC'06.
9. Hersh W.R., and etc. TREC 2005 Genomics Track Overview. In TRECOS.
10. Hersh W.R., and etc. TREC 2004 Genomics Track Overview. In TREC'04.
11. Hersh W.R., Price S., Donohoe L. Assessing thesaurus-based query expansion using the UMLS Metathesaurus. Proc AMIA Symp. 344-8. 2000.
12. Levenshtein, V. Binary codes capable of correcting deletions, insertions, and reversals. Soviet Physics - Doklady 10,10 (1996), 707-710.
13. Lin J., Demner-Fushman D. The Role of Knowledge in Conceptual Retrieval: A Study in the Domain of Clinical Medicine. SIGIR'06. 99-06.
14. Lindberg D., Humphreys B., and McCray A. The Unified Medical Language System. Methods of Information in Medicine. 32(4):281-291,1993.
15. Liu S., Liu F., Yu C., and Meng W.Y. An Effective Approach to Document Retrieval via Utilizing WordNet and Recognizing Phrases. SIGIR'04. 266-272
16. Proux D., Rechenmann F., Julliard L., Pillet V.V., Jacq B. Detecting Gene Symbols and Names in Biological Texts: A First Step toward Pertinent Information Extraction. Genome Inform Ser Workshop Genome Inform. 1998;9:72-80.
17. Robertson S.E., Walker S. Okapi/Keenbow at TREC-8. NIST Special Publication 500-246: TREC 8.
18. Sackett D.L., and etc. Evidence-Based Medicine: How to Practice and Teach EBM. Churchill Livingstone. Second edition, 2000.
19. Swanson,D.R., Smalheiser,N.R. An interactive system for finding complemen-tary literatures: a stimulus to scientific discovery. Artificial Intelligence, 1997; 91, 183-203.
20. Voorhees E. Query expansion using lexical-semantic relations. SIGIR 1994. 61-9
21. Zhong M., Huang X.J. Concept-based biomedical text retrieval. SIGIR'06. 723-4
22. Zhou W., Torvik V.l., Smalheiser N.R. ADAM: Another Database of Abbreviations in MEDLINE. Bioinformatics. 2006; 22(22): 2813-2818.