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Volumn 12, Issue 1, 2009, Pages 17-50

Exploring criteria for successful query expansion in the genomic domain

Author keywords

Concept based normalisation passage ranking; Corpus based query expansion; Knowledge based query expansion; Passage retrieval for genomic queries; Pseudo relevance feedback; TREC 2006 Genomics Track

Indexed keywords


EID: 58149237023     PISSN: 13864564     EISSN: 15737659     Source Type: Journal    
DOI: 10.1007/s10791-008-9073-9     Document Type: Article
Times cited : (53)

References (47)
  • 1
    • 58149258263 scopus 로고    scopus 로고
    • Report on the TREC 2006 Genomics experiment
    • E. M. Voorhees & L. P. Buckland (Eds.) 14-17 November, Gaithersburg, MD. NIST
    • Abdou, S., & Savoy, J. (2006). Report on the TREC 2006 Genomics experiment. In E. M. Voorhees & L. P. Buckland (Eds.), The Fifteenth Text REtrieval Conference (TREC 2006) Proceedings, 14-17 November, Gaithersburg, MD. NIST.
    • (2006) The Fifteenth Text REtrieval Conference (TREC 2006) Proceedings
    • Abdou, S.1    Savoy, J.2
  • 2
    • 33748431259 scopus 로고    scopus 로고
    • Automatic terminology management in biomedicine
    • S. Ananiadou & J. McNaught (Eds.) Norwell, MA: Artech House Books
    • Ananiadou, S., & Nenadic, G. (2006). Automatic terminology management in biomedicine. In S. Ananiadou & J. McNaught (Eds.), Text mining for biology and biomedicine (pp. 67-98). Norwell, MA: Artech House Books.
    • (2006) Text Mining for Biology and Biomedicine , pp. 67-98
    • Ananiadou, S.1    Nenadic, G.2
  • 5
    • 33751097680 scopus 로고    scopus 로고
    • Domain-specific synonym expansion and validation for biomedical information retrieval
    • E. M. Voorhees & L. P. Buckland (Eds.) 16-19 November. Gaithersburg, MD: NIST
    • Buttcher, S., Clarke, C. L. A., & Cormack, G. V. (2004). Domain-specific synonym expansion and validation for biomedical information retrieval. In E. M. Voorhees & L. P. Buckland (Eds.), The Thirteenth Text REtrieval Conference (TREC 2004) Proceedings, 16-19 November. Gaithersburg, MD: NIST.
    • (2004) The Thirteenth Text REtrieval Conference (TREC 2004) Proceedings
    • Buttcher, S.1    Clarke, C.L.A.2    Cormack, G.V.3
  • 8
    • 58149226207 scopus 로고    scopus 로고
    • Twease at TREC 2006: Breaking and fixing BM25 scoring with query expansion, a biologically inspired double mutant recovery experiment
    • E. M. Voorhees & L. P. Buckland (Eds.) 14-17 November, Gaithersburg, MD. NIST
    • Dorff, K., Wood, M., & Campagne, F. (2006). Twease at TREC 2006: Breaking and fixing BM25 scoring with query expansion, a biologically inspired double mutant recovery experiment. In E. M. Voorhees & L. P. Buckland (Eds.), The Fifteenth Text REtrieval Conference (TREC 2006) Proceedings, 14-17 November, Gaithersburg, MD. NIST.
    • (2006) The Fifteenth Text REtrieval Conference (TREC 2006) Proceedings
    • Dorff, K.1    Wood, M.2    Campagne, F.3
  • 9
    • 85055298348 scopus 로고
    • Accurate methods for the statistics of surprise and coincidence
    • 1
    • T. Dunning 1993 Accurate methods for the statistics of surprise and coincidence Computational Linguistics 19 1 61 74
    • (1993) Computational Linguistics , vol.19 , pp. 61-74
    • Dunning, T.1
  • 12
    • 0023454438 scopus 로고
    • The vocabulary problem in human-system communication
    • 11
    • G. W. Furnas T. K. Landauer L. M. Gomez S. Dumais 1987 The vocabulary problem in human-system communication CACM 30 11 964 971
    • (1987) CACM , vol.30 , pp. 964-971
    • Furnas, G.W.1    Landauer, T.K.2    Gomez, L.M.3    Dumais, S.4
  • 13
    • 58149258279 scopus 로고    scopus 로고
    • Ranking biomedical passages for relevance and diversity: University of Wisconsin at TREC Genomics 2006
    • E. M. Voorhees & L. P. Buckland (Eds.) 14-17 November, Gaithersburg, MD. NIST
    • Goldberg, A., Andrzejewski, D., Van Gael, J., Settles, B., & Zhu, X. (2006). Ranking biomedical passages for relevance and diversity: University of Wisconsin at TREC Genomics 2006. In E. M. Voorhees & L. P. Buckland (Eds.), The Fifteenth Text REtrieval Conference (TREC 2006) Proceedings, 14-17 November, Gaithersburg, MD. NIST.
    • (2006) The Fifteenth Text REtrieval Conference (TREC 2006) Proceedings
    • Goldberg, A.1    Andrzejewski, D.2    Van Gael, J.3    Settles, B.4    Zhu, X.5
  • 19
    • 58149224945 scopus 로고    scopus 로고
    • York University at TREC 2006: Genomics Track. In E. M. Voorhees & L. P. Buckland (Eds.) 14-17 November, Gaithersburg, MD. NIST
    • Huang, X., Hu, B., & Rohian, H. (2006). York University at TREC 2006: Genomics Track. In E. M. Voorhees & L. P. Buckland (Eds.), The Fifteenth Text REtrieval Conference (TREC 2006) Proceedings, 14-17 November, Gaithersburg, MD. NIST.
    • (2006) The Fifteenth Text REtrieval Conference (TREC 2006) Proceedings
    • Huang, X.1    Hu, B.2    Rohian, H.3
  • 20
    • 58149245646 scopus 로고    scopus 로고
    • Robust pseudo feedback estimation and HMM passage extraction: UIUC at TREC 2006 Genomics Track
    • E. M. Voorhees & L. P. Buckland (Eds.) 14-17 November, Gaithersburg, MD. NIST
    • Jiang, J., He, X., & Zhai, C. (2006). Robust pseudo feedback estimation and HMM passage extraction: UIUC at TREC 2006 Genomics Track. In E. M. Voorhees & L. P. Buckland (Eds.), The Fifteenth Text REtrieval Conference (TREC 2006) Proceedings, 14-17 November, Gaithersburg, MD. NIST.
    • (2006) The Fifteenth Text REtrieval Conference (TREC 2006) Proceedings
    • Jiang, J.1    He, X.2    Zhai, C.3
  • 21
    • 0026843302 scopus 로고
    • Lexical ambiguity and information retrieval
    • 2
    • R. Krovetz W. B. Croft 1992 Lexical ambiguity and information retrieval Information Systems 10 2 115 141
    • (1992) Information Systems , vol.10 , pp. 115-141
    • Krovetz, R.1    Croft, W.B.2
  • 23
    • 77951616111 scopus 로고    scopus 로고
    • Exploring probabilistic toponym resolution for geographical information retrieval
    • R. Purves & C. Jones (Eds.) 6-11 August, Seattle, WA. New York: ACM
    • Li, Y., Moffat, A., Stokes, N., & Cavedon, L. (2006). Exploring probabilistic toponym resolution for geographical information retrieval. In R. Purves & C. Jones (Eds.), Workshop on Geographic Information Retrieval, SIGIR 2006, 6-11 August, Seattle, WA. New York: ACM.
    • (2006) Workshop on Geographic Information Retrieval, SIGIR 2006
    • Li, Y.1    Moffat, A.2    Stokes, N.3    Cavedon, L.4
  • 25
    • 33644539506 scopus 로고    scopus 로고
    • Knowledge-based query expansion to support scenario-specific retrieval of medical free text
    • Santa Fe, NM. New York: ACM
    • Liu, Z., & Chu, W. (2005). Knowledge-based query expansion to support scenario-specific retrieval of medical free text. In ACM-SAC Information Access and Retrieval Track, Santa Fe, NM (pp. 1076-1083). New York: ACM.
    • (2005) ACM-SAC Information Access and Retrieval Track , pp. 1076-1083
    • Liu, Z.1    Chu, W.2
  • 28
    • 41549130556 scopus 로고    scopus 로고
    • Named entity recognition
    • S. Ananiadou & J. McNaught (Eds.) Norwell, MA: Artech House Books
    • Park, J. C., & Kim, J. (2006). Named entity recognition. In S. Ananiadou & J. McNaught (Eds.), Text mining for biology and biomedicine (pp. 121-142). Norwell, MA: Artech House Books.
    • (2006) Text Mining for Biology and Biomedicine , pp. 121-142
    • Park, J.C.1    Kim, J.2
  • 30
    • 63849165516 scopus 로고    scopus 로고
    • Automatic extraction of acronym-meaning pairs from MEDLINE databases
    • J. Pustejovsky J. Castano B. Cochran M. Kotecki M. Morrell 2001 Automatic extraction of acronym-meaning pairs from MEDLINE databases Medinfo 10 371 375
    • (2001) Medinfo , vol.10 , pp. 371-375
    • Pustejovsky, J.1    Castano, J.2    Cochran, B.3    Kotecki, M.4    Morrell, M.5
  • 32
    • 0001560952 scopus 로고
    • Relevance feedback in information retrieval
    • G. Salton (Ed.) Englewood Cliffs, NJ: Prentice Hall
    • Rocchio, J. (1971). Relevance feedback in information retrieval. In G. Salton (Ed.), The SMART Retrieval System-Experiments in Automatic Document Processing (pp. 313-323). Englewood Cliffs, NJ: Prentice Hall.
    • (1971) The SMART Retrieval System-Experiments in Automatic Document Processing , pp. 313-323
    • Rocchio, J.1
  • 33
    • 85067730716 scopus 로고    scopus 로고
    • Argumentative feedback: A linguistically-motivated term expansion for information retrieval
    • 17-81 July, Sydney, Australia. Morristown, NJ: ACL
    • Ruch, P., Tbahriti, I., Gobeill, J., & Aronson, A. R. (2006). Argumentative feedback: A linguistically-motivated term expansion for information retrieval. In Annual Meeting of the Association for Computation Linguistics (ACL), 17-81 July, Sydney, Australia (pp. 675-682). Morristown, NJ: ACL.
    • (2006) Annual Meeting of the Association for Computation Linguistics (ACL) , pp. 675-682
    • Ruch, P.1    Tbahriti, I.2    Gobeill, J.3    Aronson, A.R.4
  • 34
    • 0346907250 scopus 로고    scopus 로고
    • A survey on the use of relevance feedback for information access systems
    • 2
    • I. Ruthven M. Lalmas 2003 A survey on the use of relevance feedback for information access systems Knowledge Engineering Review 18 2 95 145
    • (2003) Knowledge Engineering Review , vol.18 , pp. 95-145
    • Ruthven, I.1    Lalmas, M.2
  • 35
    • 0142046686 scopus 로고    scopus 로고
    • Retrieving with good sense
    • 1
    • M. Sanderson 2000 Retrieving with good sense Information Retrieval 2 1 49 69
    • (2000) Information Retrieval , vol.2 , pp. 49-69
    • Sanderson, M.1
  • 36
    • 0041627757 scopus 로고    scopus 로고
    • A simple algorithm for identifying abbreviation definitions in biomedical text
    • Schwartz, A. S., & Hearst, M. A. (2003). A simple algorithm for identifying abbreviation definitions in biomedical text. In Pacific Symposium on Biocomputing 2003 (Vol. 8, pp. 451-462).
    • (2003) Pacific Symposium on Biocomputing 2003 , vol.8 , pp. 451-462
    • Schwartz, A.S.1    Hearst, M.A.2
  • 37
    • 84889563513 scopus 로고    scopus 로고
    • Combining multiple resources, evidence and criteria for genomic information retrieval
    • E. M. Voorhees & L. P. Buckland (Eds.) 14-17 November, Gaithersburg, MD. NIST
    • Si, L., Lu, J., & Callan, J. (2006). Combining multiple resources, evidence and criteria for genomic information retrieval. In E. M. Voorhees & L. P. Buckland (Eds.), The Fifteenth Text REtrieval Conference (TREC 2006) Proceedings, 14-17 November, Gaithersburg, MD. NIST.
    • (2006) The Fifteenth Text REtrieval Conference (TREC 2006) Proceedings
    • Si, L.1    Lu, J.2    Callan, J.3
  • 38
    • 58149255725 scopus 로고    scopus 로고
    • UMass Genomics 2006: Query-biased pseudo relevance feedback
    • E. M. Voorhees & L. P. Buckland (Eds.) 14-17 November, Gaithersburg, MD. NIST
    • Smucker, M. (2006). UMass Genomics 2006: Query-biased pseudo relevance feedback. In E. M. Voorhees & L. P. Buckland (Eds.), The Fifteenth Text REtrieval Conference (TREC 2006) Proceedings, 14-17 November, Gaithersburg, MD. NIST.
    • (2006) The Fifteenth Text REtrieval Conference (TREC 2006) Proceedings
    • Smucker, M.1
  • 39
    • 58149272841 scopus 로고    scopus 로고
    • Passage retrieval by shrinkage of language models
    • E. M. Voorhees & L. P. Buckland (Eds.) 14-17 November, Gaithersburg, MD. NIST
    • Song, F., Vasak, J., & Wang, W. (2006). Passage retrieval by shrinkage of language models. In E. M. Voorhees & L. P. Buckland (Eds.), The Fifteenth Text REtrieval Conference (TREC 2006) Proceedings, 14-17 November, Gaithersburg, MD. NIST.
    • (2006) The Fifteenth Text REtrieval Conference (TREC 2006) Proceedings
    • Song, F.1    Vasak, J.2    Wang, W.3
  • 42
    • 58149246913 scopus 로고    scopus 로고
    • Exploring abbreviation expansion for genomic information retrieval
    • 10-11 December, Melbourne, Australia
    • Stokes, N., Li, Y., Cavedon, L., & Zobel, J. (2007b). Exploring abbreviation expansion for genomic information retrieval. In Australasian Language Technology Workshop 2007, 10-11 December, Melbourne, Australia (pp. 100-108).
    • (2007) Australasian Language Technology Workshop 2007 , pp. 100-108
    • Stokes, N.1    Li, Y.2    Cavedon, L.3    Zobel, J.4
  • 44
    • 58149272840 scopus 로고
    • Voorhees, E. M., & Buckland, L. P. (Eds.) 2-4 November, Gaithersburg, MD. NIST
    • Voorhees, E. M., & Buckland, L. P. (Eds.). (1994). The Third Text REtrieval Conference (TREC 3) Proceedings, 2-4 November, Gaithersburg, MD. NIST.
    • (1994) The Third Text REtrieval Conference (TREC 3) Proceedings
  • 45
    • 33750976972 scopus 로고    scopus 로고
    • ADAM: Another database of abbreviations in MEDLINE
    • 22
    • W. Zhou V. I. Torvik N. R. Smalheiser 2006 ADAM: Another database of abbreviations in MEDLINE Bioinformatics 22 22 2813 2818
    • (2006) Bioinformatics , vol.22 , pp. 2813-2818
    • Zhou, W.1    Torvik, V.I.2    Smalheiser, N.R.3
  • 47
    • 58149245903 scopus 로고    scopus 로고
    • A concept-based framework for passage retrieval in genomics
    • E. M. Voorhees & L. P. Buckland (Eds.) 14-17 November, Gaithersburg, MD. NIST
    • Zhou, W., Yu, C., Torvik, V., & Smalheiser, N. (2006b). A concept-based framework for passage retrieval in genomics. In E. M. Voorhees & L. P. Buckland (Eds.), The Fifteenth Text REtrieval Conference (TREC 2006) Proceedings, 14-17 November, Gaithersburg, MD. NIST.
    • (2006) The Fifteenth Text REtrieval Conference (TREC 2006) Proceedings
    • Zhou, W.1    Yu, C.2    Torvik, V.3    Smalheiser, N.4


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