In vivo testing of MicroRNA-mediated gene knockdown in zebrafish

Journal of Biomedicine and Biotechnology

Volumn 2012, Issue , 2012, Pages

  Leong, Ivone Un San ^a   Lan, Chuan Ching ^a   Skinner, Jonathan R ^b   Shelling, Andrew N ^c   Love, Donald R ^a,d  

^a UNIVERSITY OF AUCKLAND   (New Zealand)

^b AUCKLAND CITY HOSPITAL   (New Zealand)

^c UNIVERSITY OF AUCKLAND   (New Zealand)

^d AUCKLAND CITY HOSPITAL   (New Zealand)

Author keywords

[No Author keywords available]

Indexed keywords

GREEN FLUORESCENT PROTEIN; MESSENGER RNA; MICRORNA; ENHANCED GREEN FLUORESCENT PROTEIN; ERG PROTEIN, ZEBRAFISH; POTASSIUM CHANNEL HERG; ZEBRAFISH PROTEIN;

ARTICLE; DEVELOPMENT; GENOME; IN VIVO STUDY; KNOCKOUT GENE; LONG QT SYNDROME; NONHUMAN; NUCLEOTIDE SEQUENCE; PHENOTYPE; RNA INTERFERENCE; SENSOR; ZEBRA FISH; ANALYSIS OF VARIANCE; ANIMAL; ANIMAL EMBRYO; CHEMISTRY; DISEASE MODEL; GENE SILENCING; GENETICS; HUMAN; METABOLISM; METHODOLOGY; MOUSE;

DANIO RERIO;

ANALYSIS OF VARIANCE; ANIMALS; DISEASE MODELS, ANIMAL; EMBRYO, NONMAMMALIAN; ETHER-A-GO-GO POTASSIUM CHANNELS; GENE KNOCKDOWN TECHNIQUES; GREEN FLUORESCENT PROTEINS; HUMANS; LONG QT SYNDROME; MICE; MICRORNAS; RNA INTERFERENCE; ZEBRAFISH; ZEBRAFISH PROTEINS;

EID: 84858136735     PISSN: 11107243     EISSN: 11107251     Source Type: Journal    
DOI: 10.1155/2012/350352     Document Type: Article

References (19)

1. Dooley K., Zon L. I., Zebrafish: a model system for the study of human disease Current Opinion in Genetics and Development 2000 10 3 252 256 (Pubitemid 30307241)
2. Doyon Y., McCammon J. M., Miller J. C., Faraji F., Ngo C., Katibah G. E., Amora R., Hocking T. D., Zhang L., Rebar E. J., Gregory P. D., Urnov F. D., Amacher S. L., Heritable targeted gene disruption in zebrafish using designed zinc-finger nucleases Nature Biotechnology 2008 26 6 702 708 (Pubitemid 351809597)
3. Foley J. E., Yeh J.-R. J., Maeder M. L., Reyon D., Sander J. D., Peterson R. T., Joung J. K., Rapid mutation of endogenous zebrafish genes using zinc finger nucleases made by oligomerized pool ENgineering (OPEN) PLoS One 2009 4 2
4. Maeder M. L., Thibodeau-Beganny S., Osiak A., Wright D. A., Anthony R. M., Eichtinger M., Jiang T., Foley J. E., Winfrey R. J., Townsend J. A., Unger-Wallace E., Sander J. D., Mller-Lerch F., Fu F., Pearlberg J., Gbel C., Dassie J., Pruett-Miller S. M., Porteus M. H., Sgroi D. C., Iafrate A. J., Dobbs D., McCray P. B., Cathomen T., Voytas D. F., Joung J. K., Rapid "open-source" engineering of customized zinc-finger nucleases for highly efficient gene modification Molecular Cell 2008 31 2 294 301 (Pubitemid 352001401)
5. Podolska K., Svoboda P., Targeting genes in living mammals by RNA interference Briefings in Functional Genomics 2011 10 4 238 247
6. Kleinhammer A., Deussing J., Wurst W., Khn R., Condition RNAi in mice Methods 2010 53 142 150
7. Bartel D. P., MicroRNAs: target recognition and regulatory functions Cell 2009 136 2 215 233
8. Krol J., Loedige I., Filipowicz W., The widespread regulation of microRNA biogenesis, function and decay Nature Reviews Genetics 2010 11 9 597 610
9. Giraldez A. J., Mishima Y., Rihel J., Grocock R. J., Van Dongen S., Inoue K., Enright A. J., Schier A. F., Zebrafish MiR-430 promotes deadenylation and clearance of maternal mRNAs Science 2006 312 5770 75 79
10. Zhao X. F., Fjose A., Larsen N., Helvik J. V., Drivenes., Treatment with small interfering RNA affects the microRNA pathway and causes unspecific defects in zebrafish embryos The FEBS Journal 2008 275 9 2177 2184 (Pubitemid 351569557)
11. Ho Y. L., Lin Y. H., Tsai W. Y., Hsieh F. J., Tsai H. J., Conditional antisense-knockdown of zebrafish cardiac troponin C as a new animal model for dilated cardiomyopathy Circulation Journal 2009 73 9 1691 1697
12. Dong M., Fu Y. F., Du T. T., Jing C. B., Fu C. T., Chen Y., Jin Y., Deng M., Liu T. X., Heritable and lineage-specific gene knockdown in Zebrafish embryo PLoS One 2009 4 7
13. Koopmann T. T., Alders M., Jongbloed R. J., Guerrero S., Mannens M. M. A. M., Wilde A. A. M., Bezzina C. R., Long QT syndrome caused by a large duplication in the KCNH2 (HERG) gene undetectable by current polymerase chain reaction-based exon-scanning methodologies Heart Rhythm 2006 3 1 52 55 (Pubitemid 43071890)
14. Eddy C. A., MacCormick J. M., Chung S. K., Crawford J. R., Love D. R., Rees M. I., Skinner J. R., Shelling A. N., Identification of large gene deletions and duplications in KCNQ1 and KCNH2 in patients with long QT syndrome Heart Rhythm 2008 5 9 1275 1281
15. Tang R., Dodd A., Lai D., McNabb W. C., Love D. R., Validation of zebrafish (Danio rerio) reference genes for quantitative real-time RT-PCR normalization Acta Biochimica et Biophysica Sinica 2007 39 5 384 390 (Pubitemid 46792125)
16. Bartel D. P., MicroRNAs: genomics, biogenesis, mechanism, and function Cell 2004 116 2 281 297
17. Chung K. H., Hart C. C., Al-Bassam S., Avery A., Taylor J., Patel P. D., Vojtek A. B., Turner D. L., Polycistronic RNA polymerase II expression vectors for RNA interference based on BIC/miR-155 Nucleic Acids Research 2006 34 7, article e53
18. Du T. T., Fu Y. F., Dong M., Wang L., Fan H. B., Chen Y., Jin Y., Chen S. J., Chen Z., Deng M., Huang Q. H., Liu T. X., Experimental validation and complexity of miRNA-mRNA target interaction during zebrafish primitive erythropoiesis Biochemical and Biophysical Research Communications 2009 381 4 688 693
19. Flynt A. S., Li N., Thatcher E. J., Solnica-Krezel L., Patton J. G., Zebrafish miR-214 modulates Hedgehog signaling to specify muscle cell fate Nature Genetics 2007 39 2 259 263 (Pubitemid 46184359)