Development of an SSR-based identification key for Tunisian local almonds

Scientia Agricola

Volumn 69, Issue 2, 2012, Pages 108-113

  Gouta, Hassouna ^a   Ksia, Elhem ^b   Buhner Zaharieva, Tatiana ^c   Mliki, Ahmed ^d   Gogorcena, Yolanda ^e  

^a INSTITUT DE L OLIVIER   (Tunisia)

^b FACULTÉ DES SCIENCES DE TUNIS   (Tunisia)

^c UNIVERSITY OF ZARAGOZA   (Spain)

^d CENTRE DE BIOTECHNOLOGIE DE BORJ CÉDRIA   (Tunisia)

^e CSIC   (Spain)

Author keywords

Genetic diversity; Genetic resources; Microsatellites; Molecular characterization; Prunus dulcis Mill

Indexed keywords

PRUNUS DULCIS;

EID: 84857865995     PISSN: 01039016     EISSN: 1678992X     Source Type: Journal    
DOI: 10.1590/S0103-90162012000200004     Document Type: Article

References (33)

1. Arulsekar, S.; Parfitt, D.E.; Kester, D.E. 1986. Comparison of isozyme variability in peach and almond cultivars. Journal of Heredity 77: 272-274.
2. Bassam, B.J.; Caetano-Anoelles, G.; Gresshoff, P.M. 1983. Fast and sensitive silver staining of DNA in polyacrylamide gels. Analytical Biochemistry 196: 80-83.
3. Cerezo, M.; Socias i Company, R.; Arús, P. 1989. Identification of almond cultivars by pollen isoenzymes. Journal of the American Society for Horticultural Science 114: 164-169.
4. Dickson, E.E.; Arumuganathan, K.; Kresovich, S.; Doyle, J.J. 1992. Nuclear DNA content variation within the Rosaceae. American Journal of Botany 79: 1081-1086.
5. Doyle, J.J.; Doyle, J.L. 1987. A rapid DNA isolation procedure from small quantities of fresh leaf tissue. Phytochemistry Bulletin 19: 11-15.
6. Fernandez i Marti, Á.F.; Alonso, J.M.; Espiau, M.T.; Rubio-Cabetas, M.J.; Socias i Company, R. 2009. Genetic diversity in Spanish and foreign almond germplasm assessed by molecular characterization with simple sequence repeats. Journal of the American Society for Horticultural Science 134: 535-542.
7. Gouta, H.; Ksia, E.; Zoghlami, N.; Zarrouk, M.; Mliki, A. 2008. Genetic diversity and phylogenetic relationships among Tunisian almond cultivars revealed by RAPD markers. Journal of Horticultural Science and Biotechnology 83: 707-712.
8. Gouta, H.; Guenichi, H.; Rezgui, R.; Mars, M.; Zarrouk, M.; Mliki, A.; 2010a. Production system and genetic resources of almond (Prunus dulcis L.) in the central western part of Tunisia. Revue des Regions Arides 24: 235-241 (in French, with abstract in English).
9. Gouta, H.; Ksia, E.; Buhner, T.; Moreno, M.A.; Zarrouk, M.; Mliki, A.; Gogorcena, Y. 2010b. Assessment of genetic diversity and relatedness among Tunisian almond germplasm using SSR markers. Hereditas 147: 283-292.
10. Hauagge, R.; Kester, D.E.; Arulsekar, S.; Parfitt, D.E.; Liu, L. 1987. Isozyme variation among California almond cultivars. II Cultivar characterization and origins. Journal of the American Society for Horticultural Science 112: 693-698.
11. Joobeur, T.; Periam, N.; De Vicente, M.C.; King, J.; Arús, P. 2000. Development of a second generation linkage map for almond using RAPD and SSR markers. Genome 43: 649-655.
12. Krichen, L.; Mnejja, M.; Arus, P.; Marrakchi, M.; Trifi Farah, N. 2006. Use of microsatellite polymorphisms to develop an identification key for Tunisian apricots. Genetic Resources and Crop Evolution 53: 1699-1706.
13. Mars, M.; Chebli, T.; Marrakchi, M. 1998. Multivariate analysis of fig (Ficus carica L.) germplasm in southern Tunisia. Acta Horticulturae 480: 75-81.
14. Martínez-Gómez, P.; Arulsekar, S.; Potter, D.; Gradziel, T.M. 2003. An extended interspecific gene pool available to peach and almond breeding as characterized using simple sequence repeat (SSR) markers. Euphytica 131: 313-322.
15. Martins, M.; Farinha, A.; Ferreira, E.; Cordeiro, V.; Monteiro, A.; Tenreiro, R.; Oliveira, M. 2001. Molecular analysis of the genetic variability of Portuguese almond collections. Acta Horticulturae 546: 449-452.
16. Martins, M.; Tenreiro, R.; Oliveira, M. 2003. Genetic relatedness of Portuguese almond collection assessed by RAPD and ISSR markers. Plant Cell Report 22: 71-78.
17. Mnejja, M.; Garcia-Mas, J.; Howad, W.; Arús, P. 2005. Development and transportability across Prunus species of 42 polymorphic almond microsatellites. Molecular Ecology Notes 5: 531-535.
18. Mnejja, M.; Garcia-Mas, J.; Audergon, J.M.; Arús P. 2010. Prunus microsatellite transportability across rosaceous crops. Tree Genetic and Genomes 6: 689-700.
19. Perrier, X.; Jacquemoud-Collet, J.P. 2006. DARwin software. Available at: http://darwin.cirad.fr/darwin [Accessed Aug. 14, 2007]
20. Powell, W.; Morgante, M.; Andre, C.; Hahafey, M.; Vogel, J.; Tingley, S.; Rafalski, A. 1996. The comparison of RFLP, RAPD, AFLP and SSR (microsatellite) markers for germplasm analysis. Molecular Breeding 2: 225-238.
21. Saddoud, O.; Chatti, K.; Salhi-Hannachi, A; Mars, M.; Rhouma, A.; Marrakchi, M.; Trifi, M. 2007. Genetic diversity of Tunisian figs (Ficus carica L.) as revealed by nuclear microsatellites. Hereditas 144: 149-157.
22. Saitou, N.; Nei, M. 1987. The neighbour-joining method: A new method for reconstructing phylogenetic trees. Molecular Biology Evolution 4: 406-425.
23. Sánchez-Pérez, R.; Ballester, J.; Dicenta, F.; Arus, P.; Martínez-Gómez, P. 2006. Comparison of SSR polymorphisms using automated capillary sequencers, and polyacrylamide and agarose gel electrophoresis: implications for the assessment of genetic diversity and relatedness in almond. Scientia Horticulturae 108: 310-316.
24. Shiran, B.; Amirbakhtiar, N.; Kiani, S.; Mohammadi, S.; Sayed-Tabatabaei, B.E.; Moradi, H. 2007. Molecular characterization and genetic relationship among almond cultivars assessed by RAPD and SSR markers. Scientia Horticulturae 111: 280-292.
25. Taamalli, W.; Guena, F.; Bassi, D.; Daoud, D.; Zarrouk, M. 2008. SSR marker based DNA fingerprinting of Tunisian olive (Olea europea L.) varieties. Journal of Agronomy 7: 176-181.
26. Ulanovsky, S.; Gogorcena, Y.; Martinez De Toda, F.; Ortiz, J.M. 2002. Use of molecular markers in detection of synonymies and homonymies in grapevines (Vitis vinifera L.). Scientia Horticulturae 92: 241-254.
27. Viruel, M.A.; Messeguer, R.; De Vicente, M.C.; Garcia-Mas, J.; Puigdomenech, P.; Vargas, F.J.; Arus, P. 1995. A linkage map with RFLP and isozyme markers for almond. Theoretical and Applied Genetics 91: 964-971.
28. Wu, S.B.; Wirthensohn, M.G.; Hunt, P.; Gibson, J.P.; Sedgley, M. 2008. High resolution melting analysis of almond SNPs derived from ESTs. Theoretical and Applied Genetics 118: 1-14.
29. Xie, H.; Sui, Y.; Chang, F.Q.; Xu, Y.; Ma, R.C. 2006. SSR allelic variation in almond (Prunus dulcis Mill.). Theoretical and Applied Genetics 112: 366-372.
30. Xu, Y.; Ma, R.C.; Xie, H.; Liu, J.T.; Cao, M.Q. 2004. Development of SSR markers for the phylogenetic analysis of almond trees from China and the Mediterranean region. Genome 47: 1091-1104.
31. Zehdi, S.; Trifi, M.; Billotte, N.; Marrakchi, M.; Pintaud, J.C. 2004. Genetic diversity of Tunisian date palm (Phoenix dactylifera L.) revealed by nuclear microsatellite polymorphism. Hereditas 141: 278-287.
32. Zeinalabedini, M.; Majourhat, K.; Khayam-Nekoui, M.; Grigorian, V.; Toorchi, M.; Dicenta, F.; Martínez-Gómez, P. 2007. Molecular characterization of almond cultivars and related wild species using nuclear and chloroplast DNA markers. Journal of Food and Agriculture Environment 5: 242-247.
33. Zeinalabedini, M.; Majourhat, K.; Khayam-Nekoui, M.; Grigorian, V.; Torchi, M.; Dicenta, F.; Martínez-Gómez, P. 2009. Study of the origin of the cultivated almond using nuclear and chloroplast DNA Markers. Acta Horticulturae 814: 695-700.