Molecular characterization and genetic relationship among almond cultivars assessed by RAPD and SSR markers

Scientia Horticulturae

Volumn 111, Issue 3, 2007, Pages 280-292

  Shiran, B ^a   Amirbakhtiar, N ^a   Kiani, S ^a   Mohammadi, Sh ^a   Sayed Tabatabaei, B E ^b   Moradi, H ^c  

^a SHAHREKORD UNIVERSITY   (Iran)

^b ISFAHAN UNIVERSITY OF TECHNOLOGY   (Iran)

^c Agriculture and Natural Resources Research Center   (Iran)

Author keywords

Almond; Genetic relationships; Molecular markers; Prunus dulcis; RAPDs; SSRs

Indexed keywords

ALLELE; CLADISTICS; CULTIVAR; GENETIC ANALYSIS; GENETIC MARKER; GENETIC VARIATION; GENOTYPE; NUT; RELATEDNESS;

ASIA; EURASIA; IRAN; MIDDLE EAST;

PRUNUS; PRUNUS ARGENTEA; PRUNUS DULCIS; PRUNUS PERSICA; PRUNUS SCOPARIA; SCOPARIA;

EID: 33846021631     PISSN: 03044238     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.scienta.2006.10.024     Document Type: Article

References (62)

1. Aranzana M., Pineda A., Cosson P., Dirlewanger E., Ascasibar J., Cipriani G., Ryder C., Testolin R., Abbott A., King G., Lezzoni A., and Arus P. A set of simple sequence repeat (SSR) markers covering most of the prunus genome. Theor. Appl. Genet. 106 (2003) 819-825
2. Aranzana M.J., Garcia-Mas J., Carbo J., and Arus P. Development and variability analysis of mircrosatellite markers in peach. Plant Breed 121 (2002) 87-92
3. Arulsekar S., Parfitt D.E., and Kester D.E. Comparison of isozyme variability in peach and almond cultivars. J. Hered. 77 (1986) 272-274
4. Badenes M.L., and Parfitt D.E. Phylogentic relationships of cultivated Prunus species from an analysis of chloroplast DNA variation. Theor. Appl. Genet. 90 (1995) 1035-1041
5. Bartolozzi F., Warburton M.L., Arulsekar S., and Gradziel T.M. Genetic characterization and relatedness among California almond cultivars and breeding line detected by randomly amplified polymorphic DNA (RAPD) analysis. J. Am. Soc. Hort. Sci. 123 (1998) 381-387
6. Bassam B.J., and Caetano-Anolles G. Silver staining of DNA in polyacrylamide gels. Appl. Biochem. Biotechnol. 42 (1993) 181-188
7. Browicz, K., 1974. The genus Amygdalus in Turkey. In: Proceedings of the International Symposium on Abies equitrojani and Turkish Flora, Istanbul Univ., Orman Facult., Yainlari No. 209, pp. 239-255.
8. Browicz K., and Zohary D. The genus Amygdalus L. (Rosaceae): species relationships, distribution and evolution under domestication. Genet. Resour. Crop Evol. 43 (1996) 229-247
9. Cantini C., Iezzoni A.F., Lamboy W.F., Boritzki M., and Struss D. DNA Fingerprinting of tetraploid cherry germplasm using simple sequence repeats. J. Am. Soc. Hort. Sci. 126 (2001) 205-209
10. Channuntapipat C., Wirthensohn M., Ramesh S.A., Batlle I., Arus P., Sedgley M., and Collins G. Identification of incompatibility genotypes in almond (Prunus dulcis Mill.) using specific primers based on the introns of the S-alleles. Plant Breed. 122 (2003) 164-168
11. Cipriani G., Lot G., Huang W.G., Marrazzo M.T., Peterlunger E., and Testolin R. AC/GT and AG/CT microsatellites repeats in peach (Prunus persica (L.) Batsch): isolation, characterization and cross-species amplification in Prunus. Theor. Appl. Genet. 100 (1999) 713-722
12. de Nettancourt D. Incompatibility in Angiosperms. Monographs on Theoretical and Applied Genetics vol. 3 (1977), Springer, Berlin
13. Dirlewanger E., Crosson A., Tavaud P., Aranzana M.J., Poizat C., Zanetto A., Arus P., and Laigret L. Development of microsatellite markers in peach and their use in genetic diversity analysis in peach and sweet cherry. Theor. Appl. Genet. 105 (2002) 127-138
14. Denisov V.P. Almond genetic resources in the USSR and their use in production and breeding. Acta Hort. 224 (1988) 299-306
15. Downey L.D., and Iezzoni A.F. Polymorphic DNA markers in black cherry are identified using sequences from sweet cherry, peach and sour cherry. J. Am. Soc. Hort. Sci. 125 (2000) 76-80
16. Ellegren H., Moore S., Robinson N., Byrne K., Ward W., and Sheldon B.C. Microsatellite evolution: a reciprocal study of repeat lengths at homologous loci in cattle and sheep. Mol. Biol. Evol. 14 (1997) 854-860
17. Evreinoff V.A. Contribution a l'etude de l'amandier. Fruits Primeurs Afrique 28 (1958) 99-104
18. Gradziel T.M., and Kester D.E. Breeding for self-fertility in California almond cultivars. Acta Hort. 470 (1998) 109-117
19. Gradziel T.M., Martinez-Gomez P., Dicenta F., and Kester D.E. The utilization of Prunus species for almond variety improvement. J. Am. Pomol. Soc. 55 (2001) 100-108
20. Gupta P.K., Balyan H.S., Sharma P.C., and Ramesh B. Microsatelite in plants: a new class of molecular markers. Curr. Sci. 70 (1996) 45-54
21. Hormaza J.I. Molecular characterization and similarity relationships among apricot (Prunus armeniaca L.) genotypes using simple sequence repeats. Theor. Appl. Genet. 104 (2002) 321-328
22. Horne E.C., Kumpatla S.P., Patterson K.A., Gupta M., and Thompsom S.A. Improved high-throughput sunflower and cotton genomic DNA extraction and PCR fidelity. Plant Mol. Biol. Rep. 22 (2004) 83a-183a
23. Kester D.E. Almond cultivar and breeding programmes in California. Acta Hort. 373 (1994) 13-28
24. Kester D.E., and Gradziel T.M. Almonds. In: Janick J., and Moore J.N. (Eds). Fruit Breeding, vol. 1. Almond (1996), Wiley, New York 1-97
25. Kester D.E., Gradziel T.M., and Grasselly C. Almonds (Prunus). In: Moore J.N., and Ballington H.J. (Eds). Genetic Resources of Temperate Fruit and Nut Crops (1991), Int. Soc. Hort. Sci., The Netherlands 701-758
26. Kester D.E., Gradziel T.M., and Micke W.C. Identifying pollen incompatibility groups in Californian almond cultivars. J. Am. Soc. Hort. Sci. 119 (1994) 106-109
27. Khanuja S.P.S., Shasany A.K., Darokar M.P., and Kumar S. Rapid isolation of DNA from dry and fresh samples of plant producing large amounts of secondary metabolites and essential oils. Plant Mol. Biol. Rep. 17 (1999) 1-7
28. Kloosterman A.D., Budowle B., and Daselaar P. PCR-amplification and detection of the human DIS80 VNTR Locus. Amplification conditions, population genetics and application in forensic analysis. Int. J. Leg. Med. 105 (1993) 257-264
29. Kovaleff N.V., and Kostina K.F. A contribution of the study of the genus Prunus Focke (1935), Leningrad
30. Ladizinsky G. On the origin of almond. Genet. Res. Crop Evol. 46 (1999) 143-147
31. Lefort F., Echt C., Streiff R., and Vendramin G.G. Microsatellite sequences: a new generation of molecular markers for forest genetic. For. Genet. 6 (1999) 5-10
32. Litt M., and Luty J.A. A hypervariable microsatellite revealed by in vitro amplification of a dinucleotide repeat within the cardiac muscle actin gene. Am. J. Hum. Genet. 44 (1989) 397-401
33. Mantel N. The detection of disease clustering and generalized regression approach. Cancer Res. 27 (1967) 209-220
34. Martinez-Gomez P., Arulsekar S., Potter D., and Gradziel T.M. An extended interspecific gene pool available to peach and almond breeding as characterized using simple sequence repeat (SSR) markers. Euphytica 131 (2003) 313-322
35. Martins M., Farinha A., Ferreira E., Cordeiro V., Monteiro A., Tenreiro R., and Oliveira M. Molecular analysis of the genetic variability of Portuguese almond collection. Acta Hort. 546 (2001) 449-456
36. Martins M., Tenreiro R., and Oliveira M. Genetic relatedness of Portuguese almond collection assessed by RAPD and ISSR markers. Plant Cell Rep. 22 (2003) 71-78
37. Mir Ali N., and Nabulsi I. Genetic diversity of almond (prunus dulcis) using RAPD technique. Sci. Hort. 98 (2003) 461-471
38. Murray H.C., and Thompson W.F. Rapid isolation of high molecular weight plant DNA. Nucleic Acid Res. 8 (1980) 4321-4325
39. Perry D.J., and Bousquet J. Sequence-tagged-site (STS) markers of arbitrary genes: the utility of black spruce-derived STS primers in other conifers. Theor. Appl. Genet. 97 (1998) 735-743
40. Powell W., Machray G.C., and Provan J. Polymorphism revealed by simple sequence repeats. Trends Plant Sci. 1 (1996) 215-222
41. Powell W., Morgante M., Andre C., Hanafey M., Vogel J., Tingey S., and Rafalski A. The comparison of RFLP, RAPD, AFLP and SSR (microsatellite) markers for germplasm analysis. Mol. Breed 2 (1996) 225-238
42. Rafalski J.A., Vogel J.M., Morgante M., Powell W., Andre C., and Tingey S.V. Generating and using DNA markers in plants. In: Birren B., and Lai E. (Eds). Non Mammalian Genomic Analysis. A Practical Guide (1996), Academic Press, San Diego 75-134
43. Rohlf F.J. NTSYS-PC. Numerical taxonomy and Multivariate Analysis System, Version 2.00 (1998), Exeter Software, Setauket, NY
44. Sanchez-Perez R., Ruiz D., Dicenta F., Egea J., and Marinez-Gomez P. Application of simple sequence repeat (SSR) markers in apricot breeding: molecular characterization, protection, and genetic relationships. Sci. Hort. 103 (2005) 305-315
45. Serrano B., Gomez-Aparisi J., and Hormaza J.I. Molecular fingerprinting of Prunus rootstocks using SSRs. J. Hort. Sci. Biotechnol. 77 (2002) 368-372
46. Staub J.E., Danin-Poleg Y., Fazio G., Horejsi T., Reis N., and Katzir N. Comparative analysis of cultivated melon groups (Cucumis melo L.) using random amplified polymorphic DNA and simple sequence repeat markers. Euphytica 115 (2000) 225-241
47. Steinkellner H., Lexer C., Turetschek E., and Glossl J. Conservation of (GA)n microsatellite loci between Quercus species. Mol. Ecol. 6 (1997) 1189-1194
48. Tautz D. Hypervariability of simple sequences as a general source of polymorphic DNA markers. Nucleic Acid Res. 17 (1989) 6463-6471
49. Testolin R., Marrazzo T., Cipriani G., Quarta R., Verde I., Dettori M.T., Pancaldi M., and Sansavini S. Microsatellite DNA in peach (Prunus persica L. Batsch) and its use in fingerprinting and testing the genetic origin of cultivars. Genome 43 (2000) 512-520
50. Vavilov N.I. Wild progenitors of the fruit trees of Turkistan and Caucasus and the problem of the origin of fruit trees. Proceedings of the IX International Horticultural Congress Report and Proceedings. London (1930) 271-286
51. Vezvaei A. Isozyme diversity in Iranian almond. Acta Hort. 622 (2003) 451-456
52. Viruel M.A., Messeguer R., de Vicente M.C., Garcia-Mas J., Puigdomenaech P., Vargas F.J., and Arus P. A linkage map with RFLP and isozyme markers for almond. Theor. Appl. Genet. 91 (1995) 964-971
53. Watkins R. Cherry, plum, peach, apricot and almond. In: Simmonds N.W. (Ed). Evolution of Crop Plants (1976), Longman, London 342-347
54. Weising K., Nybon H., Wolff K., and Meyer W. DNA Fingerprinting in Plants and Fungi (1995), CRC Press, Boca Raton, USA
55. Welsh J., and McClelland M. Fingerprinting genomes using PCR with arbitrary primers. Nucleic Acids Res. 18 (1990) 7213-7218
56. Williams J.G.K., Kubelike A.R., Levak K.J., Rafalski J.A., and Tingey S.V. DNA polymorphism amplification by arbitrary primers are useful as genetic markers. Nucleic Acids Res. 18 (1990) 6531-6535
57. Wood M.N. Almond varieties in the United States. USDA Bull. 1282 (1925) 1-42
58. Woolley F.M., Collins G.G., and Sedgly M. Application of DNA fingerprinting for the classification of selected almond [Prunus dulcis (Miller) D.A. Webb] cultivars. Aust. J. Exp. Agric. 40 (2000) 995-1001
59. Wunsch A., and Hormaza J.I. Cultivar identification and genetic fingerprinting of temperate fruit tree species using DNA markers. Euphytica 125 (2002) 56-67
60. Wunsch A., and Hormaza J.I. Molecular characterization of sweet cherry (Prunus avium L.) genotypes using peach (Prunus persica (L.) Batsch) SSR sequences. Heredity 89 (2002) 56-63
61. Xu Y., Ma R.C., Xie H., and Cao M.Q. Development of SSR markers for the phylogenetic analysis of almond trees from China and the Mediterranean region. Genome 47 (2004) 1091-1104
62. Zhebentyayeva T.N., Reighard G.L., Gorina V.M., and Abbott A.G. Simple sequence repeat (SSR) analysis for assessment of genetic variability in apricot germplasm. Theor. Appl. Genet. l06 (2003) 435-444