Genetic characterization of a core set of a tropical maize race Tuxpeño for further use in maize improvement

PLoS ONE

Volumn 7, Issue 3, 2012, Pages

  Wen, Weiwei ^a,b   Franco, Jorge ^c   Chavez Tovar, Victor H ^b   Yan, Jianbing ^a   Taba, Suketoshi ^b  

^a HUAZHONG AGRICULTURAL UNIVERSITY   (China)

^b INTERNATIONAL MAIZE AND WHEAT IMPROVEMENT CENTER CIMMYT   (Mexico)

^c INTERNATIONAL INSTITUTE OF TROPICAL AGRICULTURE   (Nigeria)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; CONTROLLED STUDY; CROP IMPROVEMENT; GENE CLUSTER; GENE POOL; GENETIC DISTANCE; GENETIC ENGINEERING; GENETIC IMPROVEMENT; GENETIC MARKER; GENETIC VARIABILITY; GENOME ANALYSIS; GERMPLASM; MAIZE; NONHUMAN; PHENOTYPIC VARIATION; PLANT BREEDING; PLANT COMMUNITY; SINGLE NUCLEOTIDE POLYMORPHISM; ADAPTATION; CLASSIFICATION; GENETICS; GENOTYPE; PHENOTYPE; PHYLOGENY;

TRITICUM AESTIVUM; TUXPENO; ZEA MAYS;

ADAPTATION, BIOLOGICAL; GENETIC VARIATION; GENOTYPE; PHENOTYPE; PHYLOGENY; POLYMORPHISM, SINGLE NUCLEOTIDE; ZEA MAYS;

EID: 84857848606     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0032626     Document Type: Article

References (64)

1. McClintock B, Kato-YTA, Blumenschein A, (1981) Chromosome constitution of races of maize. Colegio de postgraduados, Chapingo, Mexico.
2. Buckler ES, Phelps-Durr T, Buckler CK, Dawe AK, Doebley J, et al. (1999) Meiotic drive of chromosomal knobs reshaped the maize genome. Genetics 153: 415-426.
3. Doebley J, Goodman M, Stuber CW, (1985) Isoenzyme variation in the races of maize from Mexico. American Journal of Botany 72: 629-639.
4. Doebley JF, Goodman M, Stuber CW, (1986) Exceptional divergence of northern flint corn. American Journal of Botany 73: 64-69.
5. Bretting PK, Goodman M, Stuber CW, (1990) Isozymatic variation in Guatemalan races of maize. American Journal of Botany 77: 211-225.
6. Sánchez GJJ, Stuber CW, Goodman M, (2000) Isozymatic diversity in the races of maize of the Americas. Maydica 45: 185-203.
7. Sánchez GJJ, Goodman M, Stuber CW, (2000) Isozymatic and morphological diversity in the races of maize of Mexico. Economic Botany 54: 43-59.
8. Sánchez GJJ, Goodman M, Bird RM, Stuber CW, (2006) Isozyme and morphological variation in maize of five Andean countries. Maydica 51: 25-42.
9. Matsuoka Y, Vigouroux Y, Goodman M, Sánchez J, Buckler E, et al. (2002) A single domestication for maize shown by multilocus microsatellite genotyping. Proceedings of the National Academy of Sciences, USA 99: 6080-6084.
10. Reif JC, Warburton ML, Xia XC, Hoisington DA, Crossa J, et al. (2006) Grouping of accessions of Mexican races of maize revisited with SSR markers. Theoretical and Applied Genetics 113: 177-185.
11. Vigouroux Y, Glaubitz JC, Matsuoka Y, Goodman MM, Sánchez GJ, et al. (2008) Population structure and genetic diversity of new world maize races assessed by DNA microsatellites. American Journal of Botany 95 (10): 1240-1253.
12. Sharma L, Prasanna BM, Ramesh B, (2010) Analysis of phenotypic and microsatellite-based diversity of maize landraces in India, especially from the North East Himalayan region. Genetica 138: 619-631.
13. CIMMYT (1998) A complete listing of improved maize germplasm from CIMMYT. Maize Program Special Report. Mexico, D.F.
14. Vasal SK, Srinivasan G, Beck DL, Crossa J, Pandey S, et al. (1992) Heterosis and combining ability of CIMMYT's tropical late white maize germplasm. Maydica 37: 217-223.
15. Wellhausen EJ, (1978) Recent developments in corn breeding in tropics. In: Walden DB, editors. Corn breeding and genetics pp. 59-84 Wiley, New York.
16. Bjarnason M, Pixley K, (1994) Evaluation of Tuxpeño accessions from subtropical areas. In: The CIMMYT Maize Germplasm Bank: Genetic Resource Preservation, Regeneration, Maintenance, and Use. Maize Program Special Report. Mexico, D.F.
17. Franco J, Crossa J, Villasenor J, Taba S, Eberhart SA, (1998) Classifing genetic resources by categorical and continuous variables. Crop Sci 38: 1688-1696.
18. Franco J, Crossa J, Taba S, Shands H, (2005) A sampling strategy for conserving genetic diversity when forming core subsets. Crop Sci 45: 1035-1044.
19. Serón-Rojas JJ, Crossa J, Sahún-Castellanos J, Castillo-González F, Santacruz-Varela A, (2006) A selection index method based on eigenanalysis. Crop Sci 46: 1711-1721.
20. Ortiz R, Taba S, Tovar VHC, Mezzalama M, Xu Y, et al. (2010) Conserving and enhancing maize genetic resources as global public goods-A perspective from CIMMYT. Crop Sci 50: 1-16.
21. Taba S, Diaz J, Rivas M, Rodriguez M, Vicarte V, et al. (2003) The CIMMYT maize collection: preliminary evaluation of accessions. In: 7762 unique accessions from Mexico, the Caribbean and Central America and some countries of South America. CD-ROM.
22. Taba S, (1995) Maize germplasm: Its Spread, Use, and Strategies for Conservation. In: Taba S, editors. 1995. Maize Genetic resources. Maize program special report Mexico D.F. CIMMYT pp. 7-58.
23. Taba S, (1997) Maize. In: Fuccillo D, Sears L, Stapleton P, editors. Biodiversity in Trust, conservation and use of plant genetic resources in CGIAR Centers pp. 213-226 In Cambridge University Press, Cambridge, UK.
24. Gower JC, (1971) A general coefficient of similarity and some of its function properties. Biometrics 27: 857-874.
25. Salhuana W, Sevilla R, eds. (1995) Latin American Maize Project (LAMP), stage 4 results from homologous areas 1 and 5 (Catalog and CD-ROM). National Seed Storage Laboratory, Fort Collins, CO.
26. Salhuana W, Pollak LM, Ferrer M, Paratori O, Vivo G, (1998) Agronomic evaluation of maize accessions from Argentina, Chile, the United States, and Uruguay. Crop Sci 38: 866-872.
27. Pollak LM, (2002) The history and success of the public-private project on germplasm enhancement of maize (GEM). Advances in Agronomy 78: 45-87.
28. Salhuana W, Pollak LM, (2006) Latin American Maize Project (LAMP) and Germplasm Enhancement of Maize (GEM) Project: Generating useful breeding germplasm. Maydica 51: 339-355.
29. Murray MG, Thompson WF, (1980) Rapid isolation of high molecular weight plant DNA. Nucleic Acids Res 8: 4321-4325.
30. Yan JB, Yang XH, Hector S, Sánchez H, Li JS, et al. (2010) High-throughput SNP genotyping with the GoldenGate assay in maize. Mol Breed 25: 441-451.
31. Fan JB, Gunderson KL, Bibikova M, Yeakley JM, Chen J, et al. (2006) Illumina universal bead arrays. Methods Enzymol 410: 57-73.
32. Nei M, (1972) Genetic distance between populations. Am Nat 106: 283-292.
33. Nei M, (1987) Molecular evolutionary genetics. Columbia Univ. Press, New York.
34. Hartkamp AD, White JW, Aguilar AR, Bänziger M, Srinivasan G, et al. (2000) Maize production environments revisited: A GIS-based Approach [Online]. CIMMYT website. Available: http://www.cimmyt.org/Research/NRG/map/research_results/nrg_papers/GIS_maprod/MaProd_cont.htm. Accessed 2005 April 15).
35. Excoffier L, Laval G, Schneider S, (2005) Arlequin ver. 3.0: an integrated software package for population genetics data analysis. Evol Bioinform Online 1: 47-50.
36. Excoffier L, Smouse PE, Quattro JM, (1992) Analysis of molecular variance inferred from metric distances among DNA haplotypes: application to human mitochondrial DNA restriction data. Genetics 131: 479-491.
37. Reif JC, Melchinger AE, Frisch M, (2005) Genetical and mathematical properties of similarity and dissimilarity coefficients applied to plant breeding and seed bank management. Crop Sci 45: 1-7.
38. Franco J, Crossa J, Deshande S, (2010) Hierarchical multiple-factor analysis for classifying genotypes based on phenotypic and genetic data. Crop Sci 50: 105-117.
39. Marita JM, Rodriguez JM, Niehuis J, (2000) Development of an algorithm identifying maximally diverse core collections. Genet Resour Crop Evol 47: 515-526.
40. Wen WW, Guo TT, Chavez Tovar VH, Li HH, Yan JB, et al. (2012) The strategy and potential utilization of temperate germplasm for tropical germplasm improvement: a case study of maize (Zea mays L.). Mol Breeding DOI 10.1007/s11032-011-9696-1.
41. Goodman MM, Brown WL, (1988) Races of corn. In: Sprague GF, Dudley JW, editors. Corn and corn improvement. Third edition ASA, CSSA, SSSA publishers, Madison, Wisconsin, USA.
42. Corral JAR, Puga ND, Sánchez J, Parra JR, Eguiarte DRG, et al. (2008) Climatic Adaptation and Ecological Descriptors of 42 Mexican Maize Races. Crop Sci 48: 1502-1512.
43. Brush SB, Perales HR, (2007) A maize landscape: Ethnicity and agro-biodiversity in Chiapas, Mexico. Agric Ecosyst Environ 121: 211-221.
44. Vasal SK, Cordova H, Pandey S, Srinivasan G, (1999) Tropical maize and heterosis. In: Coors JG, Pandey S, editors. The genetics and exploitation of heterosis in crops pp. 363-373 ASA, CSSA and SSSA, Madison, WI.
45. Reif JC, Melchinger AE, Xia XC, Warburton ML, Hoisington DA, et al. (2003) Genetic distance based on simple sequence repeats and heterosis in tropical maize populations. Crop Sci 43: 1275-1282.
46. Xia XC, Reif JC, Hoisington DA, Melchinger AE, Frisch M, et al. (2004) Genetic diversity among CIMMYT maize inbred lines investigated with SSR markers: I. Lowland tropical maize. Crop Sci 44: 2230-2237.
47. Xia XC, Reif JC, Melchinger AE, Frisch M, Hoisington DA, et al. (2005) Genetic diversity among CIMMYT maize inbred lines investigated with SSR markers: II. Subtropical, tropical midaltitude, and highland maize inbred lines and their relationships with elite U.S. and European maize. Crop Sci 45: 2573-2582.
48. Liu KJ, Goodman M, Spencer M, Smith JS, Buckler ES, et al. (2003) Genetic structure and diversity among maize inbred lines as inferred from DNA microsatellites. Genetics 165: 2117-2128.
49. Melchinger AE, (1999) Genetic diversity and heterosis. In: Coors JG, Pandey S, editors. The genetics and exploitation of heterosis in crops pp. 99-118 ASA, CSSA, and SSSA, Madison, WI.
50. Moll RH, Longquist JH, Fortuna JV, Johnson EC, (1965) The relation of heterosis and genetic divergence in maize. Genetics 52: 139-144.
51. Petit RJ, Mousadik AE, Pons O, (1998) Identifying populations for conservation on the basis of genetic markers. Conservation Biology 12: 844-855.
52. Gore MA, Chia JM, Elshire RJ, Sun Q, Ersoz ES, et al. (2009) A first-generation haplotype map of maize. Science 326 (5956): 1115-1117.
53. Schnable PS, Ware D, Fulton RS, Stein JC, Wei F, et al. (2009) The B73 maize genome: complexity, diversity, and dynamics. Science 326: 1112-1115.
54. Elshire RJ, Glaubitz JC, Sun Q, Poland JA, Kawamoto K, et al. (2011) A robust, simple genotyping-by-sequencing (GBS) approach for high diversity species. PLos One 6 (5): e19379.
55. Pandey S, Vasal SK, Deutsch JA, (1991) Performance of open-polinated maize cultivars selected from 10 tropical maize populations. Crop Sci 31: 285-290.
56. Vasal SK, Beck DL, Crossa J, (1986) Studies on the combining ability of CIMMYT maize germplsam. pp. 24-33 In: CIMMYT Research highlights, Mexico D.F.: CIMMYT.
57. Han GC, Vasal SK, Beck DL, Elias E, (1991) Combining ability of inbred lines derived from CIMMYT maize (Zea mays L) germplasm. Maydica 36: 57-64.
58. Johnson EC, Fischer KS, Edmeades GO, Palmer AFE, (1986) Recurrent selection for reduced plant height in lowland tropical maize. Crop Sci 26: 253-260.
59. Fischer KS, Edmeades GO, Johnson EC, (1987) Recurrent selection for reduced tassel branch number and reduced leaf area density above the ear in tropical maize populations. Crop Sci 27: 1150-1156.
60. Fischer KS, Edmeades GO, Johnson EC, (1989) Selection for the improvement of maize yield under moisture-deficits. Field Crops Res 22: 227-243.
61. Smith ME, Mihm JA, Gracen VE, (1983) Genetics of the reaction to fall armyworm in Tuxpeño and Antigua maize populations. In: Agronomy Abstracts 1983, Madison, Wisconsin: American Society of Agronomy.
62. Whitehead FC, Caton HG, Hallauer AR, Vasal S, Cordova H, (2006) Incorporation of elite subtropical and tropical maize germplasm into elite temperate germplasm. Maydica 51: 43-56.
63. Mungoma C, Pollak LM, (1988) Heterotic patterns among ten Corn Belt and exotic maize populations. Crop Sci 28: 500-504.
64. Duvick D, (1993) Possible effects of intellectual property rights on erosion and conservation of plant genetic resources in centers of crop diversity. In: Buxton DR, Shibles R, Forsberg RA, Blad BL, Asay KH, Paulsen GM, Wilson RF, editors. International Crop Sci I pp. 505-509 CSSA, Madison, Wisconsin, USA.