Transcriptional responses of Escherichia coli K-12 and O157: H7 associated with lettuce leaves

Applied and Environmental Microbiology

Volumn 78, Issue 6, 2012, Pages 1752-1764

  Fink, Ryan C ^a   Black, Elaine P ^a   Hou, Zhe ^a   Sugawara, Masayuki ^a   Sadowsky, Michael J ^a   Diez Gonzaleza, Francisco ^a  

^a UNIVERSITY OF MINNESOTA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BIOFILM FORMATION; CURLI PRODUCTION; E. COLI; E.COLI O157:H7; ENERGY METABOLISM; ESCHERICHIA COLI O157:H7; LEAF SURFACES; MODEL SYSTEM; MOLECULAR MECHANISM; PHYLLOSPHERES; SHARED GENES; TRANSCRIPT LEVEL; TRANSCRIPTIONAL RESPONSE; TRYPTOPHANASE;

AMINO ACIDS; BIOFILMS; GENES; METABOLISM;

ESCHERICHIA COLI;

TRANSCRIPTOME;

ARRAY; BIOFILM; COLIFORM BACTERIUM; LEAFY VEGETABLE; METABOLISM; MOLECULAR ANALYSIS; MUTATION; NUMERICAL MODEL; PHYSIOLOGICAL RESPONSE; SURVIVAL;

ARTICLE; BACTERIUM ADHERENCE; COMPARATIVE STUDY; ESCHERICHIA COLI K 12; ESCHERICHIA COLI O157; GENETICS; LETTUCE; MICROARRAY ANALYSIS; MICROBIOLOGY; PHYSIOLOGY; PLANT LEAF;

BACTERIAL ADHESION; ESCHERICHIA COLI K12; ESCHERICHIA COLI O157; LETTUCE; MICROARRAY ANALYSIS; PLANT LEAVES; TRANSCRIPTOME;

BACTERIA (MICROORGANISMS); ESCHERICHIA COLI; ESCHERICHIA COLI K12; LACTUCA;

EID: 84857842353     PISSN: 00992240     EISSN: 10985336     Source Type: Journal    
DOI: 10.1128/AEM.07454-11     Document Type: Article

References (69)

1. Alba BM, Leeds JA, Onufryk C, Lu CZ, Gross CA. 2002. DegS and YaeL participate sequentially in the cleavage of RseA to activate the sigma(E)-dependent extracytoplasmic stress response. Gene Dev. 16:2156-2168.
2. Bae D, Crowley MR, Wang CL. 2011. Transcriptome analysis of Listeria monocytogenes grown on a ready-to-eat meat matrix. J. Food Prot. 74: 1104-1111.
3. Barnhart MM, Chapman MR. 2006. Curli biogenesis and function. Annu. Rev. Microbiol. 60:131-147.
4. Blanchard JL, Wholey WY, Conlon EM, Pomposiello PJ. 2007. Rapid changes in gene expression dynamics in response to superoxide reveal SoxRS-dependent and independent transcriptional networks. PloS One 2:e1186.
5. Bowtell D, Sambrook J. 2003. DNA microarrays: a cloning manual. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
6. Brumaghim JL, Li Y, Henle E, Linn S. 2003. Effects of hydrogen peroxide upon nicotinamide nucleotide metabolism in Escherichia coli-changes in enzyme levels and nicotinamide nucleotide pools and studies of the oxidation of NAD(P)H by Fe(III). J. Biol. Chem. 278:42495-42504.
7. Campbell EA, et al. 2003. Crystal structure of Escherichia coli sigma(E) with the cytoplasmic domain of its anti-sigma RseA. Mol. Cell 11:1067-1078.
8. CDC. 2007. Multistate outbreaks of Salmonella infections associated with raw tomatoes eaten in restaurants-United States, 2005-2006. MMWR Morb. Mortal. Wkly. Rep. 56:909-911.
9. Cooley M, et al. 2007. Incidence and tracking of Escherichia coli O157:H7 in a major produce production region in California. PLoS One 2:e1159.
10. Darwin AJ. 2005. The phage-shock-protein response. Mol. Microbiol. 57:621-628.
11. Delaquis P, Bach S, Dinu L-D. 2007. Behavior of Escherichia coli O157:H7 in leafy vegetables. J. Food Prot. 70:1966-1974.
12. Domka J, Lee JT, Bansal T, Wood TK. 2007. Temporal gene-expression in Escherichia coli K-12 biofilms. Environ. Microbiol. 9:332-346.
13. Dong T, Schellhorn HE. 2009. Control of RpoS in global gene expression of Escherichia coli in minimal media. Mol. Genet. Genomics 281:19-33.
14. Duffitt AD, Reber RT, Whipple A, Chauret C. 2011. Gene expression during survival of Escherichia coli O157:H7 in soil and water. Int. J. Microbiol. doi:10.1155/2011/340506.
15. Franz E, Klerks MM, De Vos OJ, Termorshuizen AJ, van Bruggen AH. 2007. Prevalence of Shiga toxin-producing Escherichia coli stx1, stx2, eaeA, and rfbE genes and survival of E. coli O157:H7 in manure from organic and low-input conventional dairy farms. Appl. Environ. Microbiol. 73:2180-2190.
16. Franz E, et al. 2007. Quantification of contamination of lettuce by GFPexpressing Escherichia coli O157:H7 and Salmonella enterica serovar Typhimurium. Food Microbiol. 24:106-112.
17. Fratamico PM, Wang SY, Yan XH, Zhang W, Li YS. 2011. Differential gene expression of E. coli O157:H7 in ground beef extract compared to tryptic soy broth. J. Food Sci. 76:M79-M87.
18. Garcia A, Mount JR, Davidson PM. 2003. Ozone and chlorine treatment of minimally processed lettuce. J. Food Sci. 68:2747-2751.
19. Gomes C, et al. 2008. E-beam irradiation of bagged, ready-to-eat spinach leaves (Spinacea oleracea): an engineering approach. J. Food Sci. 73:E95-E102.
20. Gon S, Faulkner MJ, Beckwith J. 2006. In vivo requirement for glutaredoxins and thioredoxins in the reduction of the ribonucleotide reductases of Escherichia coli. Antioxid. Redox Signal. 8:735-742.
21. Grose JH, Joss L, Velick SF, Roth JR. 2006. Evidence that feedback inhibition of NAD kinase controls responses to oxidative stress. Proc. Natl. Acad. Sci. U. S. A. 103:7601-7606.
22. Gyaneshwar P, et al. 2005. Sulfur and nitrogen limitation in Escherichia coli K-12: specific homeostatic responses. J. Bacteriol. 187:1074-1090.
23. Hassan AN, Frank JF. 2004. Attachment of Escherichia coli O157:H7 grown in tryptic soy broth and nutrient broth to apple and lettuce surfaces as related to cell hydrophobicity, surface charge, and capsule production. Int. J. Food Microbiol. 96:103-109.
24. Himathongkham S, Bahari S, Riemann H, Cliver DO. 1999. Survival of Escherichia coli O157:H7 and Salmonella typhimurium in cow manure and cow manure slurry. FEMS Microbiol. Lett. 178:251-257.
25. Johannessen GS, et al. 2005. Potential uptake of Escherichia coli O157:H7 from organic manure into crisphead lettuce. Appl. Environ. Microbiol. 71:2221-2225.
26. Jordan A, et al. 1996. The ribonucleotide reductase system of Lactococcus lactis-characterization of an nrdEF enzyme and a new electron transport protein. J. Biol. Chem. 271:8779-8785.
27. Jung JU, Gutierrez C, Villarejo MR. 1989. Sequence of an osmotically inducible lipoprotein gene. J. Bacteriol. 171:511-520.
28. Kabir MS, et al. 2005. Cell lysis directed by sigma(E) in early stationary phase and effect of induction of the rpoE gene on global gene expression in Escherichia coli. Microbiology 151:2721-2735.
29. Kabir MS, Yamashita D, Noor R, Yamada M. 2004. Effect of sigma(S) on sigma(E)-directed cell lysis in Escherichia coli early stationary phase. J. Mol. Microbiol. Biotechnol. 8:189-194.
30. Kanehara K, Ito K, Akiyama Y. 2002. YaeL (EcfE) activates the sigma(E) pathway of stress response through a site-2 cleavage of anti-sigma(E), RseA. Genes Dev. 16:2147-2155.
31. Kerr M, Martin KM, Churchill GA. 2000. Analysis of variance for gene expression microarray data. J. Comput. Biol. 7:819-837.
32. Kim KS, et al. 2010. The Rut pathway for pyrimidine degradation: novel chemistry and toxicity problems. J. Bacteriol. 192:4089-4102.
33. Kobayashi R, Suzuki T, Yoshida M. 2007. Escherichia coli phage-shock protein A (PspA) binds to membrane phospholipids and repairs proton leakage of the damaged membranes. Mol. Microbiol. 66:100-109.
34. Kredich NM. 1992. The molecular-basis for positive regulation of cys promoters in Salmonella typhimurium and Escherichia coli. Mol. Microbiol. 6:2747-2753.
35. Kutter S, Hartmann A, Schmid M. 2006. Colonization of barley (Hordeum vulgare) with Salmonella enterica and Listeria spp. FEMS Microbiol. Ecol. 56:262-271.
36. Kyle JL, Parker CT, Goudeau D, Brandl MT. 2010. Transcriptome analysis of Escherichia coli O157:H7 exposed to lysates of lettuce leaves. Appl. Environ. Microbiol. 76:1375-1387.
37. Lange R, Barth M, Hengge-Aronis R. 1993. Complex transcriptional control of the _S-dependent stationary-phase-induced and osmotically regulated osmY (csi-5) gene suggests novel roles for lrp, cyclic-AMP (cAMP) receptor protein-cAMP complex, and integration host factor in the stationary-phase response of Escherichia coli. J. Bacteriol. 175:7910-7917.
38. Lee SY, Baek SY. 2008. Effect of chemical sanitizer combined with modified atmosphere packaging on inhibiting Escherichia coli O157:H7 in commercial spinach. Food Microbiol. 25:582-587.
39. Lillig CH, Potamitou A, Schwenn JD, Vlamis-Gardikas A, Holmgren A. 2003. Redox regulation of 3'-phosphoadenylylsulfate reductase from Escherichia coli by glutathione and glutaredoxins. J. Biol. Chem. 278: 22325-22330.
40. Lillig CH, et al. 1999. New thioredoxins and glutaredoxins as electron donors of 3'-phosphoadenylylsulfate reductase. J. Biol. Chem. 274:7695-7698.
41. Loferer H, Hammar M, Normark S. 1997. Availability of the fibre subunit CsgA and the nucleator protein CsgB during assembly of fibronectinbinding curli is limited by the intracellular concentration of the novel lipoprotein CsgG. Mol. Microbiol. 26:11-23.
42. Lynch MF, Tauxe RV, Hedberg CW. 2009. The growing burden of foodborne outbreaks due to contaminated fresh produce: risks and opportunities. Epidemiol. Infect. 137:307-315.
43. Marzan LW, Shimizu K. 2009. Metabolic regulation of Escherichia coli under phosphate limitation and the effect of phoB gene knockout on the metabolism. J. Biosci. Bioeng. 108:S170-S170.
44. Maule A. 2000. Survival of verotoxigenic Escherichia coli O157 in soil, water and on surfaces. J. Appl. Microbiol. Symp. Suppl. 88:71S-78S.
45. Michino H, et al. 1999. Massive outbreak of Escherichia coli O157:H7 infection in schoolchildren in Sakai City, Japan, associated with consumption of white radish sprouts. Am. J. Epidemiol. 150:787-796.
46. Missiakas D, Mayer MP, Lemaire M, Georgopoulos C, Raina S. 1997. Modulation of the Escherichia coli sigma(E) (RpoE) heat-shock transcription-factor activity by the RseA, RseB and RseC proteins. Mol. Microbiol. 24:355-371.
47. Model P, Jovanovic G, Dworkin J. 1997. The Escherichia coli phageshock-protein (psp) operon. Mol. Microbiol. 24:255-261.
48. Niemira BA, Cooke PH. 2010. Escherichia coli O157:H7 biofilm formation on romaine lettuce and spinach leaf surfaces reduces efficacy of irradiation and sodium hypochlorite washes. J. Food Sci. 75:M270-M277.
49. Nord S, Bylund GO, Lovgren JM, Wikstrom PM. 2009. The RimP protein is important for maturation of the 30s ribosomal subunit. J. Mol. Biol. 386:742-753.
50. Rudd KE, Humphery-Smith I, Wasinger VC, Bairoch A. 1998. Low molecular weight proteins: a challenge for post-genomic research. Electrophoresis 19:536-544.
51. Saldana Z, et al. 2009. Synergistic role of curli and cellulose in cell adherence and biofilm formation of attaching and effacing Escherichia coli and identification of Fis as a negative regulator of curli. Environ. Microbiol. 11:992-1006.
52. Singh R, Mailloux RJ, Puiseux-Dao S, Appanna VD. 2007. Oxidative stress evokes a metabolic adaptation that favors increased NADPH synthesis and decreased NADH production in Pseudomonas fluorescens. J. Bacteriol. 189:6665-6675.
53. Snell EE. 1975. Tryptophanase-structure, catalytic activities, and mechanism of action. Adv. Enzymol. Relat. Areas Mol. Biol. 42:287-333.
54. Soderstrom A, et al. 2008. A large Escherichia coli O157 outbreak in Sweden associated with locally produced lettuce. Foodborne Pathog. Dis. 5:339-349.
55. Stehr M, Schneider G, Aslund F, Holmgren A, Lindqvist Y. 2001. Structural basis for the thioredoxin-like activity profile of the glutaredoxin-like NrdH-redoxin from Escherichia coli. J. Biol. Chem. 276: 35836-35841.
56. Strøm AR, Kaasen I. 1993. Trehalose metabolism in Escherichia coli: stress protection and stress regulation of gene expression. Mol. Microbiol. 8:205-210.
57. Stubbe J, van der Donk WA. 1998. Protein radicals in enzyme catalysis. Chem. Rev. 98:705-762.
58. Taormina PJ, et al. 2009. Transfer of Escherichia coli O157:H7 to iceberg lettuce via simulated field coring. J. Food Prot. 72:465-472.
59. Tusher VG, Tibshirani R, Chu GU. 2001. Significance analysis of microarrays applied to the ionizing radiation response. Proc. Natl. Acad. Sci. U. S. A. 98:5116-5121.
60. Wang QP, Kaguni JM. 1989. A novel sigma-factor is involved in expression of the rpoH gene of Escherichia coli. J. Bacteriol. 171:4248-4253.
61. Weber A, Kogl SA, Jung K. 2006. Time-dependent proteome alterations under osmotic stress during aerobic and anaerobic growth in Escherichia coli. J. Bacteriol. 188:7165-7175.
62. Wendel AM, et al. 2009. Multistate outbreak of Escherichia coli O157:H7 infection associated with consumption of packaged spinach, August-September 2006: the Wisconsin investigation. Clin. Infect. Dis. 48:1079-1086.
63. Wittstock U, Kliebenstein DJ, Lambrix V, Reichelt M, Gershenzon J. 2003. Glucosinolate hydrolysis and its impact on generalist and specialist insect herbivores, p 101-125. In John TR (ed), Recent advances in phytochemistry, vol 37. Elsevier, Philadelphia, PA.
64. Wood JD, Bezanson GS, Gordon RJ, Jamieson R. 2010. Population dynamics of Escherichia coli inoculated by irrigation into the phyllosphere of spinach grown under commercial production conditions. Int. J. Food Microbiol. 143:198-204.
65. Wood TK. 2009. Insights on Escherichia coli biofilm formation and inhibition from whole-transcriptome profiling. Environ. Microbiol. 11:1-15.
66. Xicohtencatl-Cortes J, Chacon ES, Saldana Z, Freer E, Giron JA. 2009. Interaction of Escherichia coli O157:H7 with leafy green produce. J. Food Prot. 72:1531-1537.
67. Yamazaki A, et al. 2011. Commensal effect of pectate lyases secreted from Dickeya dadantii on proliferation of Escherichia coli O157:H7 EDL933 on lettuce leaves. Appl. Environ. Microbiol. 77:156-162.
68. Zhang GD, Ma L, Phelan VH, Doyle MP. 2009. Efficacy of antimicrobial agents in lettuce leaf processing water for control of Escherichia coli O157: H7. J. Food Prot. 72:1392-1397.
69. Zhang XS, Garcia-Contreras R, Wood TK. 2007. YcfR (BhsA) influences Escherichia coli biofilm formation through stress response and surface hydrophobicity. J. Bacteriol. 189:3051-3062.