메뉴 건너뛰기




Volumn 11, Issue 3, 2012, Pages 1812-1820

Quantitative protease cleavage site profiling using tandem-mass-tag labeling and LC-MALDI-TOF/TOF MS/MS analysis

Author keywords

isobaric labeling; mass spectrometry; peptide library; PICS approach; relative quantification; TMT

Indexed keywords

ENDOPROTEINASE GLUC; METALLOPROTEINASE; PROTEINASE; UNCLASSIFIED DRUG;

EID: 84857825369     PISSN: 15353893     EISSN: 15353907     Source Type: Journal    
DOI: 10.1021/pr201051e     Document Type: Conference Paper
Times cited : (25)

References (36)
  • 1
    • 48949119466 scopus 로고    scopus 로고
    • Inflammation and breast cancer: Metalloproteinases as common effectors of inflammation and extracellular matrix breakdown in breast cancer
    • Hojilla, C. V.; Wood, G. A.; Khokha, R. Inflammation and breast cancer: metalloproteinases as common effectors of inflammation and extracellular matrix breakdown in breast cancer Breast Cancer Res. 2008, 10 (2) 205
    • (2008) Breast Cancer Res. , vol.10 , Issue.2 , pp. 205
    • Hojilla, C.V.1    Wood, G.A.2    Khokha, R.3
  • 2
    • 77950931419 scopus 로고    scopus 로고
    • Matrix metalloproteinases: Regulators of the tumor microenvironment
    • Kessenbrock, K.; Plaks, V.; Werb, Z. Matrix metalloproteinases: regulators of the tumor microenvironment Cell 2010, 141 (1) 52-67
    • (2010) Cell , vol.141 , Issue.1 , pp. 52-67
    • Kessenbrock, K.1    Plaks, V.2    Werb, Z.3
  • 3
    • 77950012622 scopus 로고    scopus 로고
    • The regulatory crosstalk between kinases and proteases in cancer
    • Lopez-Otin, C.; Hunter, T. The regulatory crosstalk between kinases and proteases in cancer Nat. Rev. Cancer 2010, 10 (4) 278-92
    • (2010) Nat. Rev. Cancer , vol.10 , Issue.4 , pp. 278-92
    • Lopez-Otin, C.1    Hunter, T.2
  • 4
    • 78149357484 scopus 로고    scopus 로고
    • Proteomic techniques and activity-based probes for the system-wide study of proteolysis
    • auf dem Keller, U.; Schilling, O. Proteomic techniques and activity-based probes for the system-wide study of proteolysis Biochimie 2010, 92 (11) 1705-14
    • (2010) Biochimie , vol.92 , Issue.11 , pp. 1705-14
    • Auf Dem Keller, U.1    Schilling, O.2
  • 5
    • 54349106665 scopus 로고    scopus 로고
    • Activity-based probes as a tool for functional proteomic analysis of proteases
    • Fonovic, M.; Bogyo, M. Activity-based probes as a tool for functional proteomic analysis of proteases Expert Rev. Proteomics 2008, 5 (5) 721-30
    • (2008) Expert Rev. Proteomics , vol.5 , Issue.5 , pp. 721-30
    • Fonovic, M.1    Bogyo, M.2
  • 6
    • 58949098779 scopus 로고    scopus 로고
    • Using specificity to strategically target proteases
    • Lim, M. D.; Craik, C. S. Using specificity to strategically target proteases Bioorg. Med. Chem. 2009, 17 (3) 1094-100
    • (2009) Bioorg. Med. Chem. , vol.17 , Issue.3 , pp. 1094-100
    • Lim, M.D.1    Craik, C.S.2
  • 7
    • 79251491023 scopus 로고    scopus 로고
    • Current strategies for probing substrate specificity of proteases
    • Poreba, M.; Drag, M. Current strategies for probing substrate specificity of proteases Curr. Med. Chem. 2010, 17 (33) 3968-95
    • (2010) Curr. Med. Chem. , vol.17 , Issue.33 , pp. 3968-95
    • Poreba, M.1    Drag, M.2
  • 8
    • 84857817395 scopus 로고    scopus 로고
    • Mass spectrometry-based proteomics strategies for protease cleavage sites identification
    • 10.1002/pmic.201100379
    • van den Berg, B.; Tholey, A. Mass spectrometry-based proteomics strategies for protease cleavage sites identification Proteomics 2012, 10.1002/pmic.201100379
    • (2012) Proteomics
    • Van Den Berg, B.1    Tholey, A.2
  • 9
    • 77953576157 scopus 로고    scopus 로고
    • Proteomic profiling of proteases: Tools for granzyme degradomics
    • van Domselaar, R.; de Poot, S. A.; Bovenschen, N. Proteomic profiling of proteases: tools for granzyme degradomics Expert Rev. Proteomics 2010, 7 (3) 347-59
    • (2010) Expert Rev. Proteomics , vol.7 , Issue.3 , pp. 347-59
    • Van Domselaar, R.1    De Poot, S.A.2    Bovenschen, N.3
  • 13
    • 3242777139 scopus 로고    scopus 로고
    • Protease degradomics: Mass spectrometry discovery of protease substrates and the CLIP-CHIP, a dedicated DNA microarray of all human proteases and inhibitors
    • Overall, C. M.; Tam, E. M.; Kappelhoff, R.; Connor, A.; Ewart, T.; Morrison, C. J.; Puente, X.; Lopez-Otin, C.; Seth, A. Protease degradomics: mass spectrometry discovery of protease substrates and the CLIP-CHIP, a dedicated DNA microarray of all human proteases and inhibitors Biol. Chem. 2004, 385 (6) 493-504
    • (2004) Biol. Chem. , vol.385 , Issue.6 , pp. 493-504
    • Overall, C.M.1    Tam, E.M.2    Kappelhoff, R.3    Connor, A.4    Ewart, T.5    Morrison, C.J.6    Puente, X.7    Lopez-Otin, C.8    Seth, A.9
  • 14
    • 77951134556 scopus 로고    scopus 로고
    • Multiplex N-terminome analysis of MMP-2 and MMP-9 substrate degradomes by iTRAQ-TAILS quantitative proteomics
    • Prudova, A.; auf dem Keller, U.; Butler, G. S.; Overall, C. M. Multiplex N-terminome analysis of MMP-2 and MMP-9 substrate degradomes by iTRAQ-TAILS quantitative proteomics Mol. Cell. Proteomics 2010, 9 (5) 894-911
    • (2010) Mol. Cell. Proteomics , vol.9 , Issue.5 , pp. 894-911
    • Prudova, A.1    Auf Dem Keller, U.2    Butler, G.S.3    Overall, C.M.4
  • 17
    • 79952242675 scopus 로고    scopus 로고
    • High resolution analysis of snake venom metalloproteinase (SVMP) peptide bond cleavage specificity using proteome based peptide libraries and mass spectrometry
    • Paes Leme, A. F.; Escalante, T.; Pereira, J. G.; Oliveira, A. K.; Sanchez, E. F.; Gutierrez, J. M.; Serrano, S. M.; Fox, J. W. High resolution analysis of snake venom metalloproteinase (SVMP) peptide bond cleavage specificity using proteome based peptide libraries and mass spectrometry J. Proteomics 2011, 74 (4) 401-10
    • (2011) J. Proteomics , vol.74 , Issue.4 , pp. 401-10
    • Paes Leme, A.F.1    Escalante, T.2    Pereira, J.G.3    Oliveira, A.K.4    Sanchez, E.F.5    Gutierrez, J.M.6    Serrano, S.M.7    Fox, J.W.8
  • 18
    • 78651069641 scopus 로고    scopus 로고
    • Characterization of the prime and non-prime active site specificities of proteases by proteome-derived peptide libraries and tandem mass spectrometry
    • Schilling, O.; Huesgen, P. F.; Barre, O.; Auf dem Keller, U.; Overall, C. M. Characterization of the prime and non-prime active site specificities of proteases by proteome-derived peptide libraries and tandem mass spectrometry Nat. Protoc. 2011, 6 (1) 111-20
    • (2011) Nat. Protoc. , vol.6 , Issue.1 , pp. 111-20
    • Schilling, O.1    Huesgen, P.F.2    Barre, O.3    Auf Dem Keller, U.4    Overall, C.M.5
  • 19
    • 44949142150 scopus 로고    scopus 로고
    • Proteome-derived, database-searchable peptide libraries for identifying protease cleavage sites
    • Schilling, O.; Overall, C. M. Proteome-derived, database-searchable peptide libraries for identifying protease cleavage sites Nat. Biotechnol. 2008, 26 (6) 685-94
    • (2008) Nat. Biotechnol. , vol.26 , Issue.6 , pp. 685-94
    • Schilling, O.1    Overall, C.M.2
  • 21
    • 0014211618 scopus 로고
    • On the size of the active site in proteases. I. Papain
    • Schechter, I.; Berger, A. On the size of the active site in proteases. I. Papain Biochem. Biophys. Res. Commun. 1967, 27 (2) 157-62
    • (1967) Biochem. Biophys. Res. Commun. , vol.27 , Issue.2 , pp. 157-62
    • Schechter, I.1    Berger, A.2
  • 22
    • 82755164012 scopus 로고    scopus 로고
    • Proteomic identification of protease cleavage sites characterizes prime- and non-prime specificity of cysteine cathepsins B, L, and S
    • Biniossek, M. L.; Naegler, D. K.; Becker-Pauly, C.; Schilling, O. Proteomic identification of protease cleavage sites characterizes prime- and non-prime specificity of cysteine cathepsins B, L, and S J. Proteome Res. 2011, 10 (12) 5363-73
    • (2011) J. Proteome Res. , vol.10 , Issue.12 , pp. 5363-73
    • Biniossek, M.L.1    Naegler, D.K.2    Becker-Pauly, C.3    Schilling, O.4
  • 23
    • 80053621170 scopus 로고    scopus 로고
    • Factor Xa subsite mapping by proteome-derived peptide libraries improved using WebPICS, a resource for proteomic identification of cleavage sites
    • Schilling, O.; dem Keller, U. A.; Overall, C. M. Factor Xa subsite mapping by proteome-derived peptide libraries improved using WebPICS, a resource for proteomic identification of cleavage sites Biol. Chem. 2011, 392 (11) 1031-7
    • (2011) Biol. Chem. , vol.392 , Issue.11 , pp. 1031-7
    • Schilling, O.1    Dem Keller, U.A.2    Overall, C.M.3
  • 25
    • 46749143346 scopus 로고    scopus 로고
    • Quantitative and temporal proteome analysis of butyrate-treated colorectal cancer cells
    • Tan, H. T.; Tan, S.; Lin, Q.; Lim, T. K.; Hew, C. L.; Chung, M. C. Quantitative and temporal proteome analysis of butyrate-treated colorectal cancer cells Mol. Cell. Proteomics 2008, 7 (6) 1174-85
    • (2008) Mol. Cell. Proteomics , vol.7 , Issue.6 , pp. 1174-85
    • Tan, H.T.1    Tan, S.2    Lin, Q.3    Lim, T.K.4    Hew, C.L.5    Chung, M.C.6
  • 26
    • 0343775584 scopus 로고    scopus 로고
    • Ionization in matrix-assisted laser desorption/ionization: Singly charged molecular ions are the lucky survivors
    • Karas, M.; Gluckmann, M.; Schafer, J. Ionization in matrix-assisted laser desorption/ionization: singly charged molecular ions are the lucky survivors J. Mass Spectrom. 2000, 35 (1) 1-12
    • (2000) J. Mass Spectrom. , vol.35 , Issue.1 , pp. 1-12
    • Karas, M.1    Gluckmann, M.2    Schafer, J.3
  • 27
    • 59849086052 scopus 로고    scopus 로고
    • A 2D reversed-phase x ion-pair reversed-phase HPLC-MALDI TOF/TOF-MS approach for shotgun proteome analysis
    • Lasaosa, M.; Delmotte, N.; Huber, C. G.; Melchior, K.; Heinzle, E.; Tholey, A. A 2D reversed-phase x ion-pair reversed-phase HPLC-MALDI TOF/TOF-MS approach for shotgun proteome analysis Anal. Bioanal. Chem. 2009, 393, 1245-56
    • (2009) Anal. Bioanal. Chem. , vol.393 , pp. 1245-56
    • Lasaosa, M.1    Delmotte, N.2    Huber, C.G.3    Melchior, K.4    Heinzle, E.5    Tholey, A.6
  • 28
    • 0033434080 scopus 로고    scopus 로고
    • Probability-based protein identification by searching sequence databases using mass spectrometry data
    • Perkins, D. N.; Pappin, D. J.; Creasy, D. M.; Cottrell, J. S. Probability-based protein identification by searching sequence databases using mass spectrometry data Electrophoresis 1999, 20 (18) 3551-67
    • (1999) Electrophoresis , vol.20 , Issue.18 , pp. 3551-67
    • Perkins, D.N.1    Pappin, D.J.2    Creasy, D.M.3    Cottrell, J.S.4
  • 29
    • 0025984862 scopus 로고
    • Fragmentation of proteins by S. aureus strain V8 protease. Ammonium bicarbonate strongly inhibits the enzyme but does not improve the selectivity for glutamic acid
    • Sorensen, S. B.; Sorensen, T. L.; Breddam, K. Fragmentation of proteins by S. aureus strain V8 protease. Ammonium bicarbonate strongly inhibits the enzyme but does not improve the selectivity for glutamic acid FEBS Lett. 1991, 294 (3) 195-7
    • (1991) FEBS Lett. , vol.294 , Issue.3 , pp. 195-7
    • Sorensen, S.B.1    Sorensen, T.L.2    Breddam, K.3
  • 31
    • 35648936933 scopus 로고    scopus 로고
    • Differential protein expression in male and female human lumbar cerebrospinal fluid using iTRAQ reagents after abundant protein depletion
    • Ogata, Y.; Charlesworth, M. C.; Higgins, L.; Keegan, B. M.; Vernino, S.; Muddiman, D. C. Differential protein expression in male and female human lumbar cerebrospinal fluid using iTRAQ reagents after abundant protein depletion Proteomics 2007, 7 (20) 3726-34
    • (2007) Proteomics , vol.7 , Issue.20 , pp. 3726-34
    • Ogata, Y.1    Charlesworth, M.C.2    Higgins, L.3    Keegan, B.M.4    Vernino, S.5    Muddiman, D.C.6
  • 34
    • 0015523789 scopus 로고
    • Purification and properties of an extracellular protease of Staphylococcus aureus
    • Drapeau, G. R.; Boily, Y.; Houmard, J. Purification and properties of an extracellular protease of Staphylococcus aureus J. Biol. Chem. 1972, 247 (20) 6720-6
    • (1972) J. Biol. Chem. , vol.247 , Issue.20 , pp. 6720-6
    • Drapeau, G.R.1    Boily, Y.2    Houmard, J.3
  • 35
    • 0015452895 scopus 로고
    • Staphylococcal protease: A proteolytic enzyme specific for glutamoyl bonds
    • Houmard, J.; Drapeau, G. R. Staphylococcal protease: a proteolytic enzyme specific for glutamoyl bonds Proc. Natl. Acad. Sci. U.S.A. 1972, 69 (12) 3506-9
    • (1972) Proc. Natl. Acad. Sci. U.S.A. , vol.69 , Issue.12 , pp. 3506-9
    • Houmard, J.1    Drapeau, G.R.2
  • 36
    • 79952212659 scopus 로고    scopus 로고
    • Profiling signatures of ovarian cancer tumour suppression using 2D-DIGE and 2D-LC-MS/MS with tandem mass tagging
    • Sinclair, J.; Metodieva, G.; Dafou, D.; Gayther, S. A.; Timms, J. F. Profiling signatures of ovarian cancer tumour suppression using 2D-DIGE and 2D-LC-MS/MS with tandem mass tagging J. Proteomics 2011, 74 (4) 451-65
    • (2011) J. Proteomics , vol.74 , Issue.4 , pp. 451-65
    • Sinclair, J.1    Metodieva, G.2    Dafou, D.3    Gayther, S.A.4    Timms, J.F.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.