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Volumn 157, Issue 3, 2012, Pages 497-501

vHoT: A database for predicting interspecies interactions between viral microRNA and host genomes

Author keywords

[No Author keywords available]

Indexed keywords

MESSENGER RNA; MICRORNA; VIRUS RNA;

EID: 84857795311     PISSN: 03048608     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00705-011-1181-y     Document Type: Article
Times cited : (12)

References (33)
  • 1
    • 0347444723 scopus 로고    scopus 로고
    • MicroRNAs: genomics, biogenesis, mechanism, and function
    • Bartel DP (2004) MicroRNAs: genomics, biogenesis, mechanism, and function. Cell 116: 281-297.
    • (2004) Cell , vol.116 , pp. 281-297
    • Bartel, D.P.1
  • 2
    • 0346727524 scopus 로고    scopus 로고
    • MicroRNAs modulate hematopoietic lineage differentiation
    • Chen CZ, Li L, Lodish HF, Bartel DP (2004) MicroRNAs modulate hematopoietic lineage differentiation. Science 303: 83-86.
    • (2004) Science , vol.303 , pp. 83-86
    • Chen, C.Z.1    Li, L.2    Lodish, H.F.3    Bartel, D.P.4
  • 3
    • 77956099873 scopus 로고    scopus 로고
    • Epigenetic regulation of mir-184 by mbd1 governs neural stem cell proliferation and differentiation
    • Liu C, Teng ZQ, Santistevan NJ, Szulwach KE, Guo W, Jin P, Zhao X (2010) Epigenetic regulation of mir-184 by mbd1 governs neural stem cell proliferation and differentiation. Cell Stem Cell 6: 433-444.
    • (2010) Cell Stem Cell , vol.6 , pp. 433-444
    • Liu, C.1    Teng, Z.Q.2    Santistevan, N.J.3    Szulwach, K.E.4    Guo, W.5    Jin, P.6    Zhao, X.7
  • 5
    • 77951026718 scopus 로고    scopus 로고
    • MicroRNA-155 functions as an OncomiR in breast cancer by targeting the suppressor of cytokine signaling 1 gene
    • Jiang S, Zhang HW, Lu MH, He XH, Li Y, Gu H, Liu MF, Wang ED (2010) MicroRNA-155 functions as an OncomiR in breast cancer by targeting the suppressor of cytokine signaling 1 gene. Cancer Res 70: 3119-3127.
    • (2010) Cancer Res , vol.70 , pp. 3119-3127
    • Jiang, S.1    Zhang, H.W.2    Lu, M.H.3    He, X.H.4    Li, Y.5    Gu, H.6    Liu, M.F.7    Wang, E.D.8
  • 6
    • 27344456287 scopus 로고    scopus 로고
    • microRNA target predictions across seven drosophila species and comparison to mammalian targets
    • Grun D, Wang YL, Langenberger D, Gunsalus KC, Rajewsky N (2005) microRNA target predictions across seven drosophila species and comparison to mammalian targets. PLoS Comput Biol 1: e13.
    • (2005) PLoS Comput Biol , vol.1
    • Grun, D.1    Wang, Y.L.2    Langenberger, D.3    Gunsalus, K.C.4    Rajewsky, N.5
  • 10
    • 11844278458 scopus 로고    scopus 로고
    • Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets
    • Lewis BP, Burge CB, Bartel DP (2005) Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets. Cell 120: 15-20.
    • (2005) Cell , vol.120 , pp. 15-20
    • Lewis, B.P.1    Burge, C.B.2    Bartel, D.P.3
  • 11
    • 33748587841 scopus 로고    scopus 로고
    • A pattern-based method for the identification of microRNA binding sites and their corresponding heteroduplexes
    • Miranda KC, Huynh T, Tay Y, Ang YS, Tam WL, Thomson AM, Lim B, Rigoutsos I (2006) A pattern-based method for the identification of microRNA binding sites and their corresponding heteroduplexes. Cell 126: 1203-1217.
    • (2006) Cell , vol.126 , pp. 1203-1217
    • Miranda, K.C.1    Huynh, T.2    Tay, Y.3    Ang, Y.S.4    Tam, W.L.5    Thomson, A.M.6    Lim, B.7    Rigoutsos, I.8
  • 14
    • 49649119633 scopus 로고    scopus 로고
    • MicroRNAs expressed by herpes simplex virus 1 during latent infection regulate viral mRNAs
    • Umbach JL, Kramer MF, Jurak I, Karnowski HW, Coen DM, Cullen BR (2008) MicroRNAs expressed by herpes simplex virus 1 during latent infection regulate viral mRNAs. Nature 454: 780-783.
    • (2008) Nature , vol.454 , pp. 780-783
    • Umbach, J.L.1    Kramer, M.F.2    Jurak, I.3    Karnowski, H.W.4    Coen, D.M.5    Cullen, B.R.6
  • 15
    • 78650073575 scopus 로고    scopus 로고
    • Prediction of human targets for viral-encoded microRNAs by thermodynamics and empirical constraints
    • Lagana A, Forte S, Russo F, Giugno R, Pulvirenti A, Ferro A (2010) Prediction of human targets for viral-encoded microRNAs by thermodynamics and empirical constraints. J RNAi Gene Silencing 6: 379-385.
    • (2010) J RNAi Gene Silencing , vol.6 , pp. 379-385
    • Lagana, A.1    Forte, S.2    Russo, F.3    Giugno, R.4    Pulvirenti, A.5    Ferro, A.6
  • 19
    • 4644237189 scopus 로고    scopus 로고
    • Fast and effective prediction of microRNA/target duplexes
    • Rehmsmeier M, Steffen P, Hochsmann M, Giegerich R (2004) Fast and effective prediction of microRNA/target duplexes. RNA 10: 1507-1517.
    • (2004) Rna , vol.10 , pp. 1507-1517
    • Rehmsmeier, M.1    Steffen, P.2    Hochsmann, M.3    Giegerich, R.4
  • 21
    • 34748821761 scopus 로고    scopus 로고
    • The role of site accessibility in microRNA target recognition
    • Kertesz M, Iovino N, Unnerstall U, Gaul U, Segal E (2007) The role of site accessibility in microRNA target recognition. Nat Genet 39: 1278-1284.
    • (2007) Nat Genet , vol.39 , pp. 1278-1284
    • Kertesz, M.1    Iovino, N.2    Unnerstall, U.3    Gaul, U.4    Segal, E.5
  • 23
    • 33749059160 scopus 로고    scopus 로고
    • miRBase: the microRNA sequence database
    • Griffiths-Jones S (2006) miRBase: the microRNA sequence database. Methods Mol Biol 342: 129-138.
    • (2006) Methods Mol Biol , vol.342 , pp. 129-138
    • Griffiths-Jones, S.1
  • 28
    • 84922692275 scopus 로고    scopus 로고
    • Building Bioinformatics Solutions: With Perl, R and MySQL
    • Oxford: Oxford University Press
    • Bessant C, Shadforth I, Oakley D (2009) Building bioinformatics solutions: with Perl, R and MySQL. Oxford biology. Oxford University Press, Oxford.
    • (2009) Oxford Biology
    • Bessant, C.1    Shadforth, I.2    Oakley, D.3
  • 31
    • 33747360451 scopus 로고    scopus 로고
    • MicroRNAs: expression, avoidance and subversion by vertebrate viruses
    • Sarnow P, Jopling C, Norman K, Schutz S, Wehner K (2006) MicroRNAs: expression, avoidance and subversion by vertebrate viruses. Nat Rev Microbiol 4: 651-659.
    • (2006) Nat Rev Microbiol , vol.4 , pp. 651-659
    • Sarnow, P.1    Jopling, C.2    Norman, K.3    Schutz, S.4    Wehner, K.5
  • 32
    • 31044444975 scopus 로고    scopus 로고
    • Tarbase: a comprehensive database of experimentally supported animal microRNA targets
    • Sethupathy P, Corda B, Hatzigeorgiou A (2006) Tarbase: a comprehensive database of experimentally supported animal microRNA targets. RNA 12: 192-197.
    • (2006) Rna , vol.12 , pp. 192-197
    • Sethupathy, P.1    Corda, B.2    Hatzigeorgiou, A.3
  • 33
    • 58149186499 scopus 로고    scopus 로고
    • miRecords: an integrated resource for microRNA-target interactions
    • Xiao F, Zuo Z, Cai G, Kang S, Gao X, Li T (2009) miRecords: an integrated resource for microRNA-target interactions. Nucleic Acids Res 37: D105-D110.
    • (2009) Nucleic Acids Res , vol.37
    • Xiao, F.1    Zuo, Z.2    Cai, G.3    Kang, S.4    Gao, X.5    Li, T.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.