-
1
-
-
58249088751
-
MicroRNAs: Target recognition and regulatory functions
-
Bartel,D.P. (2009) MicroRNAs: Target recognition and regulatory functions. Cell, 136, 215-233.
-
(2009)
Cell
, vol.136
, pp. 215-233
-
-
Bartel, D.P.1
-
2
-
-
18044377963
-
Principles of microRNA-target recognition
-
Brennecke, J., Stark, A., Russell, R.B. and Cohen, S.M. (2005) Principles of microRNA-target recognition. PLoS Biol., 3, e85.
-
(2005)
PLoS Biol.
, vol.3
-
-
Brennecke, J.1
Stark, A.2
Russell, R.B.3
Cohen, S.M.4
-
3
-
-
34547132780
-
Host immune system gene targeting by a viral miRNA
-
Stern-Ginossar, N., Elefant, N., Zimmermann, A., Wolf,D.G., Saleh, N., Biton, M., Horwitz, E., Prokocimer, Z., Prichard, M., Hahn, G. et al. (2007) Host immune system gene targeting by a viral miRNA. Science, 317, 376-381.
-
(2007)
Science
, vol.317
, pp. 376-381
-
-
Stern-Ginossar, N.1
Elefant, N.2
Zimmermann, A.3
Wolf, D.G.4
Saleh, N.5
Biton, M.6
Horwitz, E.7
Prokocimer, Z.8
Prichard, M.9
Hahn, G.10
-
4
-
-
77955475953
-
Expanding the microRNA targeting code: Functional sites with centered pairing
-
Shin, C., Nam, J.W., Farh, K.K., Chiang, H.R., Shkumatava, A. and Bartel,D.P. Expanding the microRNA targeting code: Functional sites with centered pairing. Mol. Cell, 38, 789-802.
-
Mol. Cell
, vol.38
, pp. 789-802
-
-
Shin, C.1
Nam, J.W.2
Farh, K.K.3
Chiang, H.R.4
Shkumatava, A.5
Bartel, D.P.6
-
5
-
-
15244354492
-
Incorporating structure to predict microRNA targets
-
Robins, H., Li, Y. and Padgett, R.W. (2005) Incorporating structure to predict microRNA targets. Proc. Natl Acad. Sci. USA, 102, 4006-4009.
-
(2005)
Proc. Natl Acad. Sci. USA
, vol.102
, pp. 4006-4009
-
-
Robins, H.1
Li, Y.2
Padgett, R.W.3
-
6
-
-
33748587841
-
A pattern-based method for the identification of MicroRNA binding sites and their corresponding heteroduplexes
-
Miranda, K.C., Huynh, T., Tay, Y., Ang, Y.S., Tam, W.L., Thomson, A.M., Lim, B. and Rigoutsos, I. (2006) A pattern-based method for the identification of MicroRNA binding sites and their corresponding heteroduplexes. Cell, 126, 1203-1217.
-
(2006)
Cell
, vol.126
, pp. 1203-1217
-
-
Miranda, K.C.1
Huynh, T.2
Tay, Y.3
Ang, Y.S.4
Tam, W.L.5
Thomson, A.M.6
Lim, B.7
Rigoutsos, I.8
-
7
-
-
33947424813
-
MicroTar: Predicting microRNA targets from RNA duplexes
-
Thadani, R. and Tammi, M.T. (2006) MicroTar: Predicting microRNA targets from RNA duplexes. BMC Bioinformatics, 7(Suppl. 5), S20.
-
(2006)
BMC Bioinformatics
, vol.7
, Issue.SUPPL. 5
-
-
Thadani, R.1
Tammi, M.T.2
-
8
-
-
34748821761
-
The role of site accessibility in microRNA target recognition
-
Kertesz, M., Iovino, N., Unnerstall, U., Gaul, U. and Segal, E. (2007) The role of site accessibility in microRNA target recognition. Nat. Genet., 39, 1278-1284.
-
(2007)
Nat. Genet.
, vol.39
, pp. 1278-1284
-
-
Kertesz, M.1
Iovino, N.2
Unnerstall, U.3
Gaul, U.4
Segal, E.5
-
9
-
-
34247258888
-
Potent effect of target structure on microRNA function
-
DOI 10.1038/nsmb1226, PII NSMB1226
-
Long,D., Lee, R., Williams, P., Chan, C.Y., Ambros, V. and Ding, Y. (2007) Potent effect of target structure on microRNA function. Nat. Struct. Mol. Biol., 14, 287-294. (Pubitemid 46608348)
-
(2007)
Nature Structural and Molecular Biology
, vol.14
, Issue.4
, pp. 287-294
-
-
Long, D.1
Lee, R.2
Williams, P.3
Chan, C.Y.4
Ambros, V.5
Ding, Y.6
-
10
-
-
40549089550
-
Analysis of microRNA-target interactions by a target structure based hybridization model
-
Long,D., Chan, C.Y. and Ding, Y. (2008) Analysis of microRNA-target interactions by a target structure based hybridization model. Pac. Symp. Biocomput., 64-74.
-
(2008)
Pac. Symp. Biocomput.
, pp. 64-74
-
-
Long, D.1
Chan, C.Y.2
Ding, Y.3
-
11
-
-
78650073575
-
Prediction of human targets for viral-encoded microRNAs by thermodynamics and empirical constraints
-
Laganá , A., Forte, S., Russo, F., Giugno, R., Pulvirenti, A. and Ferro, A. (2010) Prediction of human targets for viral-encoded microRNAs by thermodynamics and empirical constraints. J. RNAi Gene Silencing, 6, 379-385.
-
(2010)
J. RNAi Gene Silencing
, vol.6
, pp. 379-385
-
-
Laganá, A.1
Forte, S.2
Russo, F.3
Giugno, R.4
Pulvirenti, A.5
Ferro, A.6
-
12
-
-
60149095444
-
Most mammalian mRNAs are conserved targets of microRNAs
-
Friedman, R.C., Farh, K.K., Burge, C.B. and Bartel,D.P. (2009) Most mammalian mRNAs are conserved targets of microRNAs. Genome Res., 19, 92-105.
-
(2009)
Genome Res.
, vol.19
, pp. 92-105
-
-
Friedman, R.C.1
Farh, K.K.2
Burge, C.B.3
Bartel, D.P.4
-
13
-
-
28944439309
-
Animal MicroRNAs confer robustness to gene expression and have a significant impact on 30UTR evolution
-
Stark, A., Brennecke, J., Bushati, N., Russell, R.B. and Cohen, S.M. (2005) Animal MicroRNAs confer robustness to gene expression and have a significant impact on 30UTR evolution. Cell, 123, 1133-1146.
-
(2005)
Cell
, vol.123
, pp. 1133-1146
-
-
Stark, A.1
Brennecke, J.2
Bushati, N.3
Russell, R.B.4
Cohen, S.M.5
-
14
-
-
34249696957
-
Identification of cellular genes targeted by KSHV-encoded microRNAs
-
Samols, M.A., Skalsky, R.L., Maldonado, A.M., Riva, A., Lopez, M.C., Baker, H.V. and Renne, R. (2007) Identification of cellular genes targeted by KSHV-encoded microRNAs. PLoS Pathog., 3, e65.
-
(2007)
PLoS Pathog.
, vol.3
-
-
Samols, M.A.S.1
Kalsky, R.L.2
Maldonado, A.M.3
Riva, A.4
Lopez, M.C.5
Baker, H.V.6
Renne, R.7
-
15
-
-
0034708122
-
The 21-nucleotide let-7 RNA regulates developmental timing in Caenorhabditis elegans
-
Reinhart, B.J., Slack, F.J., Basson, M., Pasquinelli, A.E., Bettinger, J.C., Rougvie, A.E., Horvitz, H.R. and Ruvkun, G. (2000) The 21-nucleotide let-7 RNA regulates developmental timing in Caenorhabditis elegans. Nature, 403, 901-906.
-
(2000)
Nature
, vol.403
, pp. 901-906
-
-
Reinhart, B.J.1
Slack, F.J.2
Basson, M.3
Pasquinelli, A.E.4
Bettinger, J.C.5
Rougvie, A.E.6
Horvitz, H.R.7
Ruvkun, G.8
-
16
-
-
35548996307
-
Determinants of targeting by endogenous and exogenous microRNAs and siRNAs
-
Nielsen, C.B., Shomron, N., Sandberg, R., Hornstein, E., Kitzman, J. and Burge, C.B. (2007) Determinants of targeting by endogenous and exogenous microRNAs and siRNAs. RNA, 13, 1894-1910.
-
(2007)
RNA
, vol.13
, pp. 1894-1910
-
-
Nielsen, C.B.1
Shomron, N.2
Sandberg, R.3
Hornstein, E.4
Kitzman, J.5
Burge, C.B.6
-
17
-
-
34250805982
-
MicroRNA targeting specificity in mammals: Determinants beyond seed pairing
-
Grimson, A., Farh, K.K., Johnston, W.K., Garrett-Engele, P., Lim, L.P. and Bartel,D.P. (2007) MicroRNA targeting specificity in mammals: Determinants beyond seed pairing. Mol. Cell, 27, 91-105.
-
(2007)
Mol. Cell
, vol.27
, pp. 91-105
-
-
Grimson, A.1
Farh, K.K.2
Johnston, W.K.3
Garrett-Engele, P.4
Lim, L.P.5
Bartel, D.P.6
-
18
-
-
0043123153
-
Vienna RNA secondary structure server
-
Hofacker, I.L. (2003) Vienna RNA secondary structure server. Nucleic Acids Res., 31, 3429-3431.
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 3429-3431
-
-
Hofacker, I.L.1
-
19
-
-
0037250168
-
The UCSC genome browser database
-
Karolchik,D., Baertsch, R., Diekhans, M., Furey, T.S., Hinrichs, A., Lu, Y.T., Roskin, K.M., Schwartz, M., Sugnet, C.W. and Thomas,D.J. (2003) The UCSC Genome Browser Database. Nucleic Acids Res., 31, 51-54.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 51-54
-
-
Karolchik, D.1
Baertsch, R.2
Diekhans, M.3
Furey, T.S.4
Hinrichs, A.5
Lu, Y.T.6
Roskin, K.M.7
Schwartz, M.8
Sugnet, C.W.9
Thomas, D.J.10
-
21
-
-
33644750115
-
MiRBase: MicroRNA sequences, targets and gene nomenclature
-
Griffiths-Jones, S., Grocock, R.J., van Dongen, S., Bateman, A. and Enright, A.J. (2006) miRBase: MicroRNA sequences, targets and gene nomenclature. Nucleic Acids Res., 34, D140-D144.
-
(2006)
Nucleic Acids Res.
, vol.34
-
-
Griffiths-Jones, S.1
Grocock, R.J.2
Van Dongen, S.3
Bateman, A.4
Enright, A.J.5
-
22
-
-
38549150275
-
MiRBase: Tools for microRNA genomics
-
Griffiths-Jones, S., Saini, H.K., van Dongen, S., Enright, A.J. and Enright, A.J. (2008) miRBase: Tools for microRNA genomics. Nucleic Acids Res., 36, D154-D158.
-
(2008)
Nucleic Acids Res.
, vol.36
-
-
Griffiths-Jones, S.1
Saini, H.K.2
Van Dongen, S.3
Enright, A.J.4
Enright, A.J.5
-
23
-
-
31044444975
-
TarBase: A comprehensive database of experimentally supported animal microRNA targets
-
Sethupathy, P., Corda, B. and Hatzigeorgiou, A.G. (2006) TarBase: A comprehensive database of experimentally supported animal microRNA targets. RNA, 12, 192-197.
-
(2006)
RNA
, vol.12
, pp. 192-197
-
-
Sethupathy, P.1
Corda, B.2
Hatzigeorgiou, A.G.3
-
24
-
-
74049088856
-
Lost in translation: An assessment and perspective for computational microRNA target identification
-
Alexiou, P., Maragkakis, M., Papadopoulos, G.L., Reczko, M. and Hatzigeorgiou, A.G. (2009) Lost in translation: An assessment and perspective for computational microRNA target identification. Bioinformatics, 25, 3049-3055.
-
(2009)
Bioinformatics
, vol.25
, pp. 3049-3055
-
-
Alexiou, P.1
Maragkakis, M.2
Papadopoulos, G.L.3
Reczko, M.4
Hatzigeorgiou, A.G.5
-
25
-
-
49949117302
-
Widespread changes in protein synthesis induced by microRNAs
-
Selbach, M., Schwanhausser, B., Thierfelder, N., Fang, Z., Khanin, R. and Rajewsky, N. (2008) Widespread changes in protein synthesis induced by microRNAs. Nature, 455, 58-63.
-
(2008)
Nature
, vol.455
, pp. 58-63
-
-
Selbach, M.1
Schwanhausser, B.2
Thierfelder, N.3
Fang, Z.4
Khanin, R.5
Rajewsky, N.6
-
26
-
-
49949116902
-
The impact of microRNAs on protein output
-
Baek,D., Villen, J., Shin, C., Camargo, F.D., Gygi, S.P. and Bartel,D.P. (2008) The impact of microRNAs on protein output. Nature, 455, 64-71.
-
(2008)
Nature
, vol.455
, pp. 64-71
-
-
Baek, D.1
Villen, J.2
Shin, C.3
Camargo, F.D.4
Gygi, S.P.5
Bartel, D.P.6
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