-
1
-
-
7444231693
-
Mechanism of the eukaryotic chaperonin: Protein folding in the chamber of secrets
-
DOI 10.1016/j.tcb.2004.09.015, PII S0962892404002661
-
Spiess C, Meyer AS, Reissmann S, Frydman J (2004) Mechanism of the eukaryotic chaperonin: Protein folding in the chamber of secrets. Trends Cell Biol 14:598-604. (Pubitemid 39440608)
-
(2004)
Trends in Cell Biology
, vol.14
, Issue.11
, pp. 598-604
-
-
Spiess, C.1
Meyer, A.S.2
Reissmann, S.3
Frydman, J.4
-
2
-
-
0032478545
-
Crystal structure of the thermosome, the archaeal chaperonin and homolog of CCT
-
DOI 10.1016/S0092-8674(00)81152-6
-
Ditzel L, et al. (1998) Crystal structure of the thermosome, the archaeal chaperonin and homolog of CCT. Cell 93:125-138. (Pubitemid 28173558)
-
(1998)
Cell
, vol.93
, Issue.1
, pp. 125-138
-
-
Ditzel, L.1
Lowe, J.2
Stock, D.3
Stetter, K.-O.4
Huber, H.5
Huber, R.6
Steinbacher, S.7
-
3
-
-
46449109112
-
Mechanism of lid closure in the eukaryotic chaperonin TRiC/CCT
-
DOI 10.1038/nsmb.1436, PII NSMB1436
-
Booth CR, et al. (2008) Mechanism of lid closure in the eukaryotic chaperonin TRiC/CCT. Nat Struct Mol Biol 15:746-753. (Pubitemid 351931999)
-
(2008)
Nature Structural and Molecular Biology
, vol.15
, Issue.7
, pp. 746-753
-
-
Booth, C.R.1
Meyer, A.S.2
Cong, Y.3
Topf, M.4
Sali, A.5
Ludtke, S.J.6
Chiu, W.7
Frydman, J.8
-
4
-
-
18744362987
-
Analysis of the interaction between the eukaryotic chaperonin CCT and its substrates actin and tubulin
-
Llorca O, et al. (2001) Analysis of the interaction between the eukaryotic chaperonin CCT and its substrates actin and tubulin. J Struct Biol 135:205-218.
-
(2001)
J Struct Biol
, vol.135
, pp. 205-218
-
-
Llorca, O.1
-
5
-
-
34247635168
-
Essential function of the built-in lid in the allosteric regulation of eukaryotic and archaeal chaperonins
-
DOI 10.1038/nsmb1236, PII NSMB1236
-
Reissmann S, Parnot C, Booth CR, Chiu W, Frydman J (2007) Essential function of the built-in lid in the allosteric regulation of eukaryotic and archaeal chaperonins. Nat Struct Mol Biol 14:432-440. (Pubitemid 46685886)
-
(2007)
Nature Structural and Molecular Biology
, vol.14
, Issue.5
, pp. 432-440
-
-
Reissmann, S.1
Parnot, C.2
Booth, C.R.3
Chiu, W.4
Frydman, J.5
-
6
-
-
57149098022
-
Defining the TRiC/CCT interactome links chaperonin function to stabilization of newly made proteins with complex topologies
-
Yam AY, et al. (2008) Defining the TRiC/CCT interactome links chaperonin function to stabilization of newly made proteins with complex topologies. Nat Struct Mol Biol 15:1255-1262.
-
(2008)
Nat Struct Mol Biol
, vol.15
, pp. 1255-1262
-
-
Yam, A.Y.1
-
7
-
-
0026776331
-
A cytoplasmic chaperonin that catalyzes beta-actin folding
-
Gao Y, Thomas JO, Chow RL, Lee GH, Cowan NJ (1992) A cytoplasmic chaperonin that catalyzes beta-actin folding. Cell 69:1043-1050.
-
(1992)
Cell
, vol.69
, pp. 1043-1050
-
-
Gao, Y.1
Thomas, J.O.2
Chow, R.L.3
Lee, G.H.4
Cowan, N.J.5
-
8
-
-
0026650749
-
TCP1 complex is a molecular chaperone in tubulin biogenesis
-
Yaffe MB, et al. (1992) TCP1 complex is a molecular chaperone in tubulin biogenesis. Nature 358:245-248.
-
(1992)
Nature
, vol.358
, pp. 245-248
-
-
Yaffe, M.B.1
-
9
-
-
75149145980
-
Mechanism of folding chamber closure in a group II chaperonin
-
Zhang J, et al. (2010) Mechanism of folding chamber closure in a group II chaperonin. Nature 463:379-383.
-
(2010)
Nature
, vol.463
, pp. 379-383
-
-
Zhang, J.1
-
10
-
-
33748490520
-
All three chaperonin genes in the archaeon Haloferax volcanii are individually dispensable
-
DOI 10.1111/j.1365-2958.2006.05324.x
-
Kapatai G, et al. (2006) All three chaperonin genes in the archaeon Haloferax volcanii are individually dispensable. Mol Microbiol 61:1583-1597. (Pubitemid 44359385)
-
(2006)
Molecular Microbiology
, vol.61
, Issue.6
, pp. 1583-1597
-
-
Kapatai, G.1
Large, A.2
Benesch, J.L.P.3
Robinson, C.V.4
Carrascosa, J.L.5
Valpuesta, J.M.6
Gowrinathan, P.7
Lund, P.A.8
-
11
-
-
0035783161
-
Gene duplication and the evolution of group II chaperonins: Implications for structure and function
-
Archibald JM, Blouin C, Doolittle WF (2001) Gene duplication and the evolution of group II chaperonins: Implications for structure and function. J Struct Biol 135:157-169.
-
(2001)
J Struct Biol
, vol.135
, pp. 157-169
-
-
Archibald, J.M.1
Blouin, C.2
Doolittle, W.F.3
-
12
-
-
78650980445
-
Crystal structure of the open conformation of the mammalian chaperonin CCT in complex with tubulin
-
Muñoz IG, et al. (2011) Crystal structure of the open conformation of the mammalian chaperonin CCT in complex with tubulin. Nat Struct Mol Biol 18:14-19.
-
(2011)
Nat Struct Mol Biol
, vol.18
, pp. 14-19
-
-
Muñoz, I.G.1
-
13
-
-
33749080319
-
Identification of the TRiC/CCT Substrate Binding Sites Uncovers the Function of Subunit Diversity in Eukaryotic Chaperonins
-
DOI 10.1016/j.molcel.2006.09.003, PII S1097276506006319
-
Spiess C, Miller EJ, McClellan AJ, Frydman J (2006) Identification of the TRiC/CCT substrate binding sites uncovers the function of subunit diversity in eukaryotic chaperonins. Mol Cell 24:25-37. (Pubitemid 44466686)
-
(2006)
Molecular Cell
, vol.24
, Issue.1
, pp. 25-37
-
-
Spiess, C.1
Miller, E.J.2
McClellan, A.J.3
Frydman, J.4
-
14
-
-
17844378217
-
Sequential ATP-induced allosteric transitions of the cytoplasmic chaperonin containing TCP-1 revealed by EM analysis
-
DOI 10.1038/nsmb901
-
Rivenzon-Segal D, Wolf SG, Shimon L, Willison KR, Horovitz A (2005) Sequential ATP-induced allosteric transitions of the cytoplasmic chaperonin containing TCP-1 revealed by EM analysis. Nat Struct Mol Biol 12:233-237. (Pubitemid 43079364)
-
(2005)
Nature Structural and Molecular Biology
, vol.12
, Issue.3
, pp. 233-237
-
-
Rivenzon-Segal, D.1
Wolf, S.G.2
Shimon, L.3
Willison, K.R.4
Horovitz, A.5
-
15
-
-
77955282609
-
Equivalent mutations in the eight subunits of the chaperonin CCT produce dramatically different cellular and gene expression phenotypes
-
Amit M, et al. (2010) Equivalent mutations in the eight subunits of the chaperonin CCT produce dramatically different cellular and gene expression phenotypes. J Mol Biol 401:532-543.
-
(2010)
J Mol Biol
, vol.401
, pp. 532-543
-
-
Amit, M.1
-
16
-
-
33847415928
-
The inter-ring arrangement of the cytosolic chaperonin CCT
-
DOI 10.1038/sj.embor.7400894, PII 7400894
-
Martín-Benito J, et al. (2007) The inter-ring arrangement of the cytosolic chaperonin CCT. EMBO Rep 8:252-257. (Pubitemid 46344590)
-
(2007)
EMBO Reports
, vol.8
, Issue.3
, pp. 252-257
-
-
Martin-Benito, J.1
Grantham, J.2
Boskovic, J.3
Brackley, K.I.4
Carrascosa, J.L.5
Willison, K.R.6
Valpuesta, J.M.7
-
17
-
-
77950456761
-
4.0-A resolution cryo-EM structure of the mammalian chaperoni n TRiC/CCT reveals its unique subunit arrangement
-
Cong Y, et al. (2010) 4.0-A resolution cryo-EM structure of the mammalian chaperoni n TRiC/CCT reveals its unique subunit arrangement. Proc Natl Acad Sci USA 107:4967-4972.
-
(2010)
Proc Natl Acad Sci USA
, vol.107
, pp. 4967-4972
-
-
Cong, Y.1
-
18
-
-
79961026866
-
The crystal structure of yeast CCT reveals intrinsic asymmetry of eukaryotic cytosolic chaperonins
-
Dekker C, et al. (2011) The crystal structure of yeast CCT reveals intrinsic asymmetry of eukaryotic cytosolic chaperonins. EMBO J 30:3078-3090.
-
(2011)
EMBO J
, vol.30
, pp. 3078-3090
-
-
Dekker, C.1
-
19
-
-
0030842428
-
Elucidation of the subunit orientation in CCT (chaperonin containing TCP1) from the subunit composition of CCT micro-complexes
-
DOI 10.1093/emboj/16.14.4311
-
Liou AK, Willison KR (1997) Elucidation of the subunit orientation in CCT (chaperonin containing TCP1) from the subunit composition of CCT micro-complexes. EMBO J 16:4311-4316. (Pubitemid 27298184)
-
(1997)
EMBO Journal
, vol.16
, Issue.14
, pp. 4311-4316
-
-
Liou, A.K.F.1
Willison, K.R.2
-
20
-
-
79961171000
-
Insights into the intra-ring subunit order of tric/cct: A structural and evolutionary analysis
-
Kalisman N, Levitt M (2010) Insights into the intra-ring subunit order of tric/cct: A structural and evolutionary analysis. Pac Symp Biocomput 2010:252-259.
-
(2010)
Pac Symp Biocomput
, vol.2010
, pp. 252-259
-
-
Kalisman, N.1
Levitt, M.2
-
21
-
-
77955381399
-
Probing native protein structures by chemical cross-linking, mass spectrometry, and bioinformatics
-
Leitner A, et al. (2010) Probing native protein structures by chemical cross-linking, mass spectrometry, and bioinformatics. Mol Cell Proteomics 9:1634-1649.
-
(2010)
Mol Cell Proteomics
, vol.9
, pp. 1634-1649
-
-
Leitner, A.1
-
22
-
-
79851513173
-
The beginning of a beautiful friendship: Cross-linking/mass spectrometry and modelling of proteins and multi-protein complexes
-
Rappsilber J (2011) The beginning of a beautiful friendship: Cross-linking/mass spectrometry and modelling of proteins and multi-protein complexes. J Struct Biol 173:530-540.
-
(2011)
J Struct Biol
, vol.173
, pp. 530-540
-
-
Rappsilber, J.1
-
23
-
-
34548749239
-
Annexin A2/P11 interaction: New insights into annexin A2 tetramer structure by chemical crosslinking, high-resolution mass spectrometry, and computational modeling
-
DOI 10.1002/prot.21445
-
Schulz DM, et al. (2007) Annexin A2/P11 interaction: New insights into annexin A2 tetramer structure by chemical crosslinking, high-resolution mass spectrometry, and computational modeling. Proteins 69:254-269. (Pubitemid 47429289)
-
(2007)
Proteins: Structure, Function and Genetics
, vol.69
, Issue.2
, pp. 254-269
-
-
Schulz, D.M.1
Kalkhof, S.2
Schmidt, A.3
Ihling, C.4
Stingl, C.5
Mechtler, K.6
Zschornig, O.7
Sinz, A.8
-
24
-
-
38349037648
-
Structural analysis of multiprotein complexes by cross-linking, mass spectrometry, and database searching
-
Maiolica A, et al. (2007) Structural analysis of multiprotein complexes by cross-linking, mass spectrometry, and database searching. Mol Cell Proteomics 6:2200-2211.
-
(2007)
Mol Cell Proteomics
, vol.6
, pp. 2200-2211
-
-
Maiolica, A.1
-
25
-
-
77149146167
-
Architecture of the RNA polymerase II-TFIIF complex revealed by cross-linking and mass spectrometry
-
Chen ZA, et al. (2010) Architecture of the RNA polymerase II-TFIIF complex revealed by cross-linking and mass spectrometry. EMBO J 29:717-726.
-
(2010)
EMBO J
, vol.29
, pp. 717-726
-
-
Chen, Z.A.1
-
26
-
-
78650450552
-
Structure of the 26S proteasome from Schizosaccharomyces pombe at subnanometer resolution
-
Bohn S, et al. (2010) Structure of the 26S proteasome from Schizosaccharomyces pombe at subnanometer resolution. Proc Natl Acad Sci USA 107:20992-20997.
-
(2010)
Proc Natl Acad Sci USA
, vol.107
, pp. 20992-20997
-
-
Bohn, S.1
-
27
-
-
67649616340
-
Structural insights into the calmodulin-Munc13 interaction obtained by cross-linking and mass spectrometry
-
Dimova K, et al. (2009) Structural insights into the calmodulin-Munc13 interaction obtained by cross-linking and mass spectrometry. Biochemistry 48:5908-5921.
-
(2009)
Biochemistry
, vol.48
, pp. 5908-5921
-
-
Dimova, K.1
-
28
-
-
47749144375
-
Chances and pitfalls of chemical cross-linking with amine-reactive N-hydroxysuccinimide esters
-
Kalkhof S, Sinz A (2008) Chances and pitfalls of chemical cross-linking with amine-reactive N-hydroxysuccinimide esters. Anal Bioanal Chem 392:305-132.
-
(2008)
Anal Bioanal Chem
, vol.392
, pp. 305-1132
-
-
Kalkhof, S.1
Sinz, A.2
-
29
-
-
41449110185
-
Identification of cross-linked peptides from large sequence databases
-
DOI 10.1038/nmeth.1192, PII NMETH.1192
-
Rinner O, et al. (2008) Identification of cross-linked peptides from large sequence databases. Nat Methods 5:315-318. (Pubitemid 351455158)
-
(2008)
Nature Methods
, vol.5
, Issue.4
, pp. 315-318
-
-
Rinner, O.1
Seebacher, J.2
Walzthoeni, T.3
Mueller, L.4
Beck, M.5
Schmidt, A.6
Mueller, M.7
Aebersold, R.8
-
30
-
-
67650663963
-
Improved results in proteomics by use of local and peptide-class specific false discovery rates
-
Sennels L, Bukowski-Wills JC, Rappsilber J (2009) Improved results in proteomics by use of local and peptide-class specific false discovery rates. BMC Bioinformatics 10:179.
-
(2009)
BMC Bioinformatics
, vol.10
, pp. 179
-
-
Sennels, L.1
Bukowski-Wills, J.C.2
Rappsilber, J.3
-
31
-
-
33748328052
-
Protein cross-linking analysis using mass spectrometry, isotope-coded cross-linkers, and integrated computational data processing
-
DOI 10.1021/pr060154z
-
Seebacher J, et al. (2006) Protein cross-linking analysis using mass spectrometry, isotope- coded cross-linkers, and integrated computational data processing. J Proteome Res 5:2270-2282. (Pubitemid 44330820)
-
(2006)
Journal of Proteome Research
, vol.5
, Issue.9
, pp. 2270-2282
-
-
Seebacher, J.1
Mallick, P.2
Zhang, N.3
Eddes, J.S.4
Aebersold, R.5
Gelb, M.H.6
-
32
-
-
47749114921
-
A three-dimensional homology model of lipid-free apolipoprotein A-IV using cross-linking and mass spectrometry
-
Tubb MR, Silva RA, Fang J, Tso P, Davidson WS (2008) A three-dimensional homology model of lipid-free apolipoprotein A-IV using cross-linking and mass spectrometry. J Biol Chem 283:17314-17323.
-
(2008)
J Biol Chem
, vol.283
, pp. 17314-17323
-
-
Tubb, M.R.1
Silva, R.A.2
Fang, J.3
Tso, P.4
Davidson, W.S.5
-
33
-
-
9344221072
-
Unraveling the interface of signal recognition particle and its receptor by using chemical cross-linking and tandem mass spectrometry
-
DOI 10.1073/pnas.0407456101
-
Chu F, et al. (2004) Unraveling the interface of signal recognition particle and its receptor by using chemical cross-linking and tandem mass spectrometry. Proc Natl Acad Sci USA 101:16454-16459. (Pubitemid 39557734)
-
(2004)
Proceedings of the National Academy of Sciences of the United States of America
, vol.101
, Issue.47
, pp. 16454-16459
-
-
Chu, F.1
Shan, S.-O.2
Moustakas, D.T.3
Alber, F.4
Egea, P.F.5
Stroud, R.M.6
Walter, P.7
Burlingame, A.L.8
-
34
-
-
0034572910
-
Purification of the cytosolic chaperonin TRiC from bovine testis
-
Ferreyra RG, Frydman J (2000) Purification of the cytosolic chaperonin TRiC from bovine testis. Methods Mol Biol 140:153-60.
-
(2000)
Methods Mol Biol
, vol.140
, pp. 153-160
-
-
Ferreyra, R.G.1
Frydman, J.2
-
35
-
-
0347757092
-
Crystal Structures of the Group II Chaperonin from Thermococcus strain KS-1: Steric Hindrance by the Substituted Amino Acid, and Inter-subunit Rearrangement between Two Crystal Forms
-
DOI 10.1016/j.jmb.2003.11.028
-
Shomura Y, et al. (2004) Crystal structures of the group II chaperonin from Thermococcus strain KS-1: Steric hindrance by the substituted amino acid, and inter-subunit rearrangement between two crystal forms. J Mol Biol 335:1265-1278. (Pubitemid 38081291)
-
(2004)
Journal of Molecular Biology
, vol.335
, Issue.5
, pp. 1265-1278
-
-
Shomura, Y.1
Yoshida, T.2
Iizuka, R.3
Maruyama, T.4
Yohda, M.5
Miki, K.6
-
36
-
-
0002344794
-
Bootstrap methods: Another look at the jackknife
-
Efron B (1979) Bootstrap methods: Another look at the jackknife. Ann Stat 7:1-26.
-
(1979)
Ann Stat
, vol.7
, pp. 1-26
-
-
Efron, B.1
|