-
1
-
-
0033648564
-
Probing protein surface topology by chemical surface labeling, cross-linking, and mass spectrometry
-
Bennett, K. L.; Matthiesen, T.; Roepstorff, P. Probing protein surface topology by chemical surface labeling, cross-linking, and mass spectrometry. Methods Mol. Biol. 2000, 146, 113-131.
-
(2000)
Methods Mol. Biol.
, vol.146
, pp. 113-131
-
-
Bennett, K.L.1
Matthiesen, T.2
Roepstorff, P.3
-
2
-
-
0027203297
-
New photolabeling and cross-linking methods
-
Brunner, J. New photolabeling and cross-linking methods. Annu. Rev. Biochem. 1993, 62, 483-514.
-
(1993)
Annu. Rev. Biochem.
, vol.62
, pp. 483-514
-
-
Brunner, J.1
-
3
-
-
0034705128
-
High throughput protein fold identification by using experimental constraints derived from intramolecular cross-links and mass spectrometry
-
Young, M. M.; Tang, N.; Hempel, J. C.; Oshiro, C. M.; Taylor, E. W.; Kuntz, I. D.; Gibson, B. W.; Dollinger, G. High throughput protein fold identification by using experimental constraints derived from intramolecular cross-links and mass spectrometry. Proc. Natl. Acad. Sci. U.S.A. 2000, 97, 5802-5806.
-
(2000)
Proc. Natl. Acad. Sci. U.S.A.
, vol.97
, pp. 5802-5806
-
-
Young, M.M.1
Tang, N.2
Hempel, J.C.3
Oshiro, C.M.4
Taylor, E.W.5
Kuntz, I.D.6
Gibson, B.W.7
Dollinger, G.8
-
4
-
-
0034650492
-
A generic strategy to analyze the spatial organization of multi-protein complexes by cross-linking and mass spectrometry
-
Rappsilber, J.; Siniossolou, S.; Hurt, E. C.; Mann, M. A Generic Strategy To Analyze the Spatial Organization of Multi-Protein Complexes by Cross-Linking and Mass Spectrometry. Anal. Chem. 2000, 72, 267-275.
-
(2000)
Anal. Chem.
, vol.72
, pp. 267-275
-
-
Rappsilber, J.1
Siniossolou, S.2
Hurt, E.C.3
Mann, M.4
-
5
-
-
0041846956
-
MS2Assign, automated assignment and nomenclature of tandem mass spectra of chemically cross-linked peptides
-
Schilling, B.; Row, R. H.; Gibson, B. W.; Guo, X.; Young, M. M. MS2Assign, automated assignment and nomenclature of tandem mass spectra of chemically cross-linked peptides. J. Am. Soc. Mass Spectrom. 2003, 14, 834-850.
-
(2003)
J. Am. Soc. Mass Spectrom.
, vol.14
, pp. 834-850
-
-
Schilling, B.1
Row, R.H.2
Gibson, B.W.3
Guo, X.4
Young, M.M.5
-
6
-
-
9344245698
-
Probabilistic cross-link analysis and experiment planning for high-throughput elucidation of protein structure
-
Ye, X.; O'Neil, P. K.; Foster, A. N.; Gajda, M. J.; Kosinski, J.; Kurowski, M. A.; Bujnicki, J. M.; Friedman, A. M.; Bailey-Kellogg, C. Probabilistic cross-link analysis and experiment planning for high-throughput elucidation of protein structure. Protein Sci. 2004, 13, 3298-3313.
-
(2004)
Protein Sci.
, vol.13
, pp. 3298-3313
-
-
Ye, X.1
O'Neil, P.K.2
Foster, A.N.3
Gajda, M.J.4
Kosinski, J.5
Kurowski, M.A.6
Bujnicki, J.M.7
Friedman, A.M.8
Bailey-Kellogg, C.9
-
7
-
-
0347286732
-
Chemical cross-linking and mass spectrometry for mapping three-dimensional structures of proteins and protein complexes
-
Sinz, A. Chemical cross-linking and mass spectrometry for mapping three-dimensional structures of proteins and protein complexes. J. Mass. Spectrom. 2003, 38, 1225-1237.
-
(2003)
J. Mass. Spectrom.
, vol.38
, pp. 1225-1237
-
-
Sinz, A.1
-
8
-
-
19444371218
-
A novel strategy for the identification of protein-DNA contacts by photo-cross-linking and mass spectrometry
-
Geyer, H.; Geyer, R.; Pingoud, V. A novel strategy for the identification of protein-DNA contacts by photo-cross-linking and mass spectrometry. Nucleic Acids Res. 2004, 32, e132.
-
(2004)
Nucleic Acids Res.
, vol.32
-
-
Geyer, H.1
Geyer, R.2
Pingoud, V.3
-
9
-
-
0042349690
-
Chemical cross-linking and mass spectrometry for protein structural modeling
-
Back, J. W.; de Jong, L.; Muijsers, A. O.; de Koster, C. G. Chemical Cross-linking and Mass Spectrometry for Protein Structural Modeling. J. Mol. Biol. 2003, 331, 303-313.
-
(2003)
J. Mol. Biol.
, vol.331
, pp. 303-313
-
-
Back, J.W.1
De Jong, L.2
Muijsers, A.O.3
De Koster, C.G.4
-
10
-
-
24044520965
-
Isotopically coded cleavable cross-linker for studying protein-protein interaction and protein complexes
-
Petrochenko, E. V.; Olkhovik, V. K.; Borchers, C. H. Isotopically Coded Cleavable Cross-linker for Studying Protein-Protein Interaction and Protein Complexes. Mol. Cell. Proteomics 2005, 4, 1167-79.
-
(2005)
Mol. Cell. Proteomics
, vol.4
, pp. 1167-1179
-
-
Petrochenko, E.V.1
Olkhovik, V.K.2
Borchers, C.H.3
-
11
-
-
33745742438
-
Chemical cross-linking and mass spectrometry to map three-dimensional protein structures and protein-protein interactions
-
Sinz, A. Chemical Cross-linking and Mass Spectrometry to Map Three-Dimensional Protein Structures and Protein-Protein Interactions. Mass Spectrom. Rev. 2006, 25, 663-682.
-
(2006)
Mass Spectrom. Rev.
, vol.25
, pp. 663-682
-
-
Sinz, A.1
-
12
-
-
0242669340
-
A modular cross-linking approach for exploring protein interactions
-
Trester-Zedlitz, M.; Kamada, K.; Burley, S. K.; Fenyo, D.; Chait, B. T.; Muir, T. W. A modular cross-linking approach for exploring protein interactions. J. Am. Chem. Soc. 2003, 125, 2416-2425.
-
(2003)
J. Am. Chem. Soc.
, vol.125
, pp. 2416-2425
-
-
Trester-Zedlitz, M.1
Kamada, K.2
Burley, S.K.3
Fenyo, D.4
Chait, B.T.5
Muir, T.W.6
-
13
-
-
2442604553
-
Mass spectrometric detection of affinity purified cross-linked peptides
-
Hurst, G. B.; Lankford, T. K.; Kennel, S. J. Mass spectrometric detection of affinity purified cross-linked peptides. J. Am. Soc. Mass Spectrom. 2004, 15, 832-839.
-
(2004)
J. Am. Soc. Mass Spectrom.
, vol.15
, pp. 832-839
-
-
Hurst, G.B.1
Lankford, T.K.2
Kennel, S.J.3
-
14
-
-
0035326345
-
Isotope-tagged cross-linking reagents. A new tool in mass spectrometric protein interaction analysis
-
Müller, D. R.; Schindler, P.; Towbin, H.; Wirth, U.; Voshol, H.; Hoving, S.; Steinmetz, M. O. Isotope-Tagged Cross-Linking Reagents. A New Tool in Mass Spectrometric Protein Interaction Analysis. Anal. Chem. 2001, 73, 1927-1934.
-
(2001)
Anal. Chem.
, vol.73
, pp. 1927-1934
-
-
Müller, D.R.1
Schindler, P.2
Towbin, H.3
Wirth, U.4
Voshol, H.5
Hoving, S.6
Steinmetz, M.O.7
-
15
-
-
0242317292
-
Isotopically labeled cross-linking reagents: Resolution of mass degeneracy in the identification of cross-linked peptides
-
Collins, C. J.; Schilling, B.; Young, M.; Dollinger, G.; Guy, R. K. Isotopically labeled cross-linking reagents: resolution of mass degeneracy in the identification of cross-linked peptides. Bioorg. Med. Chem. Lett. 2003, 13, 4023-4026.
-
(2003)
Bioorg. Med. Chem. Lett.
, vol.13
, pp. 4023-4026
-
-
Collins, C.J.1
Schilling, B.2
Young, M.3
Dollinger, G.4
Guy, R.K.5
-
16
-
-
3042818018
-
The international protein index: An integrated database for proteomics experiments
-
Kersey, P. J.; Duarte, J.; Williams, A.; Karavidopoulou, Y.; Birney, E.; Apweiler, R. The International Protein Index: An integrated database for proteomics experiments. Proteomics 2004, 4 (7), 1985-1988.
-
(2004)
Proteomics
, vol.4
, Issue.7
, pp. 1985-1988
-
-
Kersey, P.J.1
Duarte, J.2
Williams, A.3
Karavidopoulou, Y.4
Birney, E.5
Apweiler, R.6
-
17
-
-
1842577654
-
Computational redesign of protein-protein interaction specificity
-
Kortemme, T.; Joachimiak, L. A.; Bullock, A. N.; Schuler, A. D.; Stoddard, B. L.; Baker, D. Computational redesign of protein-protein interaction specificity. Nat. Struct. Mol. Biol. 2004, 11, 371-379.
-
(2004)
Nat. Struct. Mol. Biol.
, vol.11
, pp. 371-379
-
-
Kortemme, T.1
Joachimiak, L.A.2
Bullock, A.N.3
Schuler, A.D.4
Stoddard, B.L.5
Baker, D.6
-
18
-
-
0036808207
-
A probabilistic algorithm to identify peptides through sequence database searching using tandem mass spectral data
-
Zhang, N.; Aebersold, R.; Schwikowski, B. A probabilistic algorithm to identify peptides through sequence database searching using tandem mass spectral data. Proteomics 2002, 2, 1406-1412.
-
(2002)
Proteomics
, vol.2
, pp. 1406-1412
-
-
Zhang, N.1
Aebersold, R.2
Schwikowski, B.3
-
19
-
-
0033565832
-
Role of accurate mass measurement (± 10 ppm) in protein identification strategies employing MS or MS/MS and database searching
-
Clauser, K. R.; Baker, P. R.; Burlingame, A. L. Role of accurate mass measurement (± 10 ppm) in protein identification strategies employing MS or MS/MS and database searching. Anal. Chem. 1999, 71, 2871-2882.
-
(1999)
Anal. Chem.
, vol.71
, pp. 2871-2882
-
-
Clauser, K.R.1
Baker, P.R.2
Burlingame, A.L.3
-
20
-
-
33748325067
-
-
center of advanced european studies and research (caesar), Bonn, Germany
-
Wefing, S.; Schnaible, V.; Hoffmann, D. SearchXLinks, http://www.searchxlinks.de/, center of advanced european studies and research (caesar), Bonn, Germany, 2001.
-
(2001)
-
-
Wefing, S.1
Schnaible, V.2
Hoffmann, D.3
-
21
-
-
27644497319
-
CLPM: A cross-linked peptide mapping algorithm for mass spectrometric analysis
-
Jul 15
-
Tang, Y.; Chen, Y.; Lichti, C. F.; Hall, R. A.; Raney, K. D.; Jennings, S. F. CLPM: a cross-linked peptide mapping algorithm for mass spectrometric analysis BMC Bioinformatics 2005 Jul 15; 6 Suppl 2: S9.
-
(2005)
BMC Bioinformatics
, vol.6
, Issue.SUPPL. 2
-
-
Tang, Y.1
Chen, Y.2
Lichti, C.F.3
Hall, R.A.4
Raney, K.D.5
Jennings, S.F.6
-
22
-
-
33645016907
-
Computer-assisted mass spectrometric analysis of naturally occurring and artificially introduced cross-links in proteins and protein complexes
-
de Koning, L. J.; Kasper, P. T.; Back, J. W.; Nessen, M. A.; Vanrobaeys, F.; Van Beeumen, J.; Gherardi, E.; de Koster, C. G.; de long, L. Computer-assisted mass spectrometric analysis of naturally occurring and artificially introduced cross-links in proteins and protein complexes FEBS J. 2006, 273, 281-91.
-
(2006)
FEBS J.
, vol.273
, pp. 281-291
-
-
De Koning, L.J.1
Kasper, P.T.2
Back, J.W.3
Nessen, M.A.4
Vanrobaeys, F.5
Van Beeumen, J.6
Gherardi, E.7
De Koster, C.G.8
De Long, L.9
-
23
-
-
33344463891
-
Influence of Cross-linker Identity and Position on Gas-Phase Dissociation of Lys-Lys Cross-linked Peptides
-
Gaucher, S. P.; Hadi, M. Z.; Young, M. M. Influence of Cross-linker Identity and Position on Gas-Phase Dissociation of Lys-Lys Cross-linked Peptides. J. Am. Soc. Mass Spectrom. 2006, 17, 395-405.
-
(2006)
J. Am. Soc. Mass Spectrom.
, vol.17
, pp. 395-405
-
-
Gaucher, S.P.1
Hadi, M.Z.2
Young, M.M.3
-
24
-
-
21844457685
-
Fragmentation pathways of protonated peptides
-
Paizs, B.; Suhai, S, Fragmentation pathways of protonated peptides. Mass Spectrom. Rev. 2005, 24, 508-548.
-
(2005)
Mass Spectrom. Rev.
, vol.24
, pp. 508-548
-
-
Paizs, B.1
Suhai, S.2
-
25
-
-
0034973193
-
Quantitative evaluation of the lengths of homobifunctional protein cross-linking reagents used as molecular rulers
-
Green, N. S.; Reisler, E.; Houk, K. N. Quantitative evaluation of the lengths of homobifunctional protein cross-linking reagents used as molecular rulers. Protein Sci. 2001, 10, 1293-1304.
-
(2001)
Protein Sci.
, vol.10
, pp. 1293-1304
-
-
Green, N.S.1
Reisler, E.2
Houk, K.N.3
-
26
-
-
18844423484
-
Probing conformational changes of human serum albumin due to unsaturated fatty acid binding by chemical cross-linking and mass spectrometry
-
Huang, B. X.; Dass, C.; Kim, H. Y. Probing conformational changes of human serum albumin due to unsaturated fatty acid binding by chemical cross-linking and mass spectrometry. Biochem. J. 2005, 387, 695-702.
-
(2005)
Biochem. J.
, vol.387
, pp. 695-702
-
-
Huang, B.X.1
Dass, C.2
Kim, H.Y.3
-
27
-
-
0032828715
-
A generic protein purification method for protein complex characterization and proteome exploration
-
Rigaut, G.; Shevchenko, A.; Rutz, B.; Wilm, M.; Mann, M.; Seraphin, B. A generic protein purification method for protein complex characterization and proteome exploration. Nat. Biotechnol. 1899, 17, 1030-1032.
-
(1899)
Nat. Biotechnol.
, vol.17
, pp. 1030-1032
-
-
Rigaut, G.1
Shevchenko, A.2
Rutz, B.3
Wilm, M.4
Mann, M.5
Seraphin, B.6
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