-
1
-
-
0004228157
-
-
2nd edn. ASM Press, Washington, DC
-
Friedberg, E. C., Walker, G. C., Siede, W., Wood, R. D., Schultz, R. A. and Ellenberger, T. (2006) DNA Repair and Mutagenesis, 2nd edn. ASM Press, Washington, DC.
-
(2006)
DNA Repair and Mutagenesis
-
-
Friedberg, E.C.1
Walker, G.C.2
Siede, W.3
Wood, R.D.4
Schultz, R.A.5
Ellenberger, T.6
-
2
-
-
0028342951
-
Repair of oxidative damage to DNA: Enzymology and biology
-
Demple, B. and Harrison, L. (1994) Repair of oxidative damage to DNA: enzymology and biology. Annu. Rev. Biochem., 63, 915-948.
-
(1994)
Annu. Rev. Biochem.
, vol.63
, pp. 915-948
-
-
Demple, B.1
Harrison, L.2
-
3
-
-
0344586043
-
Mutagenicity, toxicity and repair of DNA base damage induced by oxidation
-
Bjelland, S. and Seeberg, E. (2003) Mutagenicity, toxicity and repair of DNA base damage induced by oxidation. Mutat. Res., 531, 37-80.
-
(2003)
Mutat. Res.
, vol.531
, pp. 37-80
-
-
Bjelland, S.1
Seeberg, E.2
-
4
-
-
33644633050
-
Catalytic promiscuity and the divergent evolution of DNA repair enzymes
-
O'Brien, P. J. (2006) Catalytic promiscuity and the divergent evolution of DNA repair enzymes. Chem. Rev., 106, 720-752.
-
(2006)
Chem. Rev.
, vol.106
, pp. 720-752
-
-
O'Brien, P.J.1
-
5
-
-
0025113010
-
Analysis of class II (hydrolytic) and class i (beta-lyase) apurinic/apyrimidinic endonucleases with a synthetic DNA substrate
-
Levin, J. D. and Demple, B. (1990) Analysis of class II (hydrolytic) and class I (beta-lyase) apurinic/apyrimidinic endonucleases with a synthetic DNA substrate. Nucleic Acids Res., 18, 5069-5075.
-
(1990)
Nucleic Acids Res.
, vol.18
, pp. 5069-5075
-
-
Levin, J.D.1
Demple, B.2
-
6
-
-
0348140585
-
Abasic sites in DNA: Repair and biological consequences in Saccharomyces cerevisiae
-
Boiteux, S. and Guillet, M. (2004) Abasic sites in DNA: repair and biological consequences in Saccharomyces cerevisiae. DNA Repair, 3, 1-12.
-
(2004)
DNA Repair
, vol.3
, pp. 1-12
-
-
Boiteux, S.1
Guillet, M.2
-
7
-
-
0347026055
-
30-blocking damage of DNA as a mutagenic lesion caused by hydrogen peroxide in Escherichia coli
-
Takemoto, T., Zhang, Q. M., Matsumoto, Y., Mito, S., Izumi, T., Ikehata, H. and Yonei, S. (1998) 30-blocking damage of DNA as a mutagenic lesion caused by hydrogen peroxide in Escherichia coli. J. Radiat. Res., 39, 137-144.
-
(1998)
J. Radiat. Res.
, vol.39
, pp. 137-144
-
-
Takemoto, T.1
Zhang, Q.M.2
Matsumoto, Y.3
Mito, S.4
Izumi, T.5
Ikehata, H.6
Yonei, S.7
-
8
-
-
0343319790
-
Exonuclease III and endonuclease IV remove 30 blocks from DNA synthesis primers in H2O2-damaged Escherichia coli
-
Demple, B., Johnson, A. and Fung, D. (1986) Exonuclease III and endonuclease IV remove 30 blocks from DNA synthesis primers in H2O2-damaged Escherichia coli. Proc. Natl Acad. Sci. USA, 83, 7731-7735.
-
(1986)
Proc. Natl Acad. Sci. USA
, vol.83
, pp. 7731-7735
-
-
Demple, B.1
Johnson, A.2
Fung, D.3
-
9
-
-
0032822325
-
Envisioning the molecular choreography of DNA base excision repair
-
Parikh, S. S., Mol, C. D., Hosfield, D. J. and Tainer, J. A. (1999) Envisioning the molecular choreography of DNA base excision repair. Curr. Opin. Struct. Biol., 9, 37-47.
-
(1999)
Curr. Opin. Struct. Biol.
, vol.9
, pp. 37-47
-
-
Parikh, S.S.1
Mol, C.D.2
Hosfield, D.J.3
Tainer, J.A.4
-
10
-
-
33947181044
-
AP endonuclease paralogues with distinct activities in DNA repair and bacterial pathogenesis
-
Carpenter, E. P., Corbett, A., Thomson, H., Adacha, J., Jensen, K., Bergeron, J., Kasampalidis, I., Exley, R., Winterbotham, M., Tang, C. et al. (2007) AP endonuclease paralogues with distinct activities in DNA repair and bacterial pathogenesis. EMBO J., 26, 1363-1372.
-
(2007)
EMBO J.
, vol.26
, pp. 1363-1372
-
-
Carpenter, E.P.1
Corbett, A.2
Thomson, H.3
Adacha, J.4
Jensen, K.5
Bergeron, J.6
Kasampalidis, I.7
Exley, R.8
Winterbotham, M.9
Tang, C.10
-
11
-
-
0026323008
-
Cloning and expression of APE, the cDNA encoding the major human apurinic endonuclease: Definition of a family of DNA repair enzymes
-
Demple, B., Herman, T. and Chen, D. S. (1991) Cloning and expression of APE, the cDNA encoding the major human apurinic endonuclease: definition of a family of DNA repair enzymes. Proc. Natl Acad. Sci. USA, 88, 11450-11454.
-
(1991)
Proc. Natl Acad. Sci. USA
, vol.88
, pp. 11450-11454
-
-
Demple, B.1
Herman, T.2
Chen, D.S.3
-
12
-
-
0031574192
-
Base excision repair enzyme family portrait: Integrating the structure and chemistry of an entire DNA repair pathway
-
Parikh, S. S., Mol, C. D. and Tainer, J. A. (1997) Base excision repair enzyme family portrait: integrating the structure and chemistry of an entire DNA repair pathway. Structure, 5, 1543-1550.
-
(1997)
Structure
, vol.5
, pp. 1543-1550
-
-
Parikh, S.S.1
Mol, C.D.2
Tainer, J.A.3
-
13
-
-
0030728449
-
The crystal structure of the human DNA repair endonuclease HAP1 suggests the recognition of extra-helical deoxyribose at DNA abasic sites
-
Gorman, M. A., Morera, S., Rothwell, D. G., de La Fortelle, E., Mol, C. D., Tainer, J. A., Hickson, I. D. and Freemont, P. S. (1997) The crystal structure of the human DNA repair endonuclease HAP1 suggests the recognition of extra-helical deoxyribose at DNA abasic sites. EMBO J., 16, 6548-6558.
-
(1997)
EMBO J.
, vol.16
, pp. 6548-6558
-
-
Gorman, M.A.1
Morera, S.2
Rothwell, D.G.3
De La Fortelle, E.4
Mol, C.D.5
Tainer, J.A.6
Hickson, I.D.7
Freemont, P.S.8
-
14
-
-
0000973806
-
A deoxyribonucleic acid phosphatase-exonuclease from Escherichia coli. Ii. Characterization of the exonuclease activity
-
Richardson, C. C., Lehman, I. R. and Kornberg, A. (1964) A deoxyribonucleic acid phosphatase-exonuclease from Escherichia coli. Ii. Characterization of the exonuclease activity. J. Biol. Chem., 239, 251-258.
-
(1964)
J. Biol. Chem.
, vol.239
, pp. 251-258
-
-
Richardson, C.C.1
Lehman, I.R.2
Kornberg, A.3
-
15
-
-
0026004662
-
Two distinct human DNA diesterases that hydrolyze 30-blocking deoxyribose fragments from oxidized DNA
-
Chen, D. S., Herman, T. and Demple, B. (1991) Two distinct human DNA diesterases that hydrolyze 30-blocking deoxyribose fragments from oxidized DNA. Nucleic Acids Res., 19, 5907-5914.
-
(1991)
Nucleic Acids Res.
, vol.19
, pp. 5907-5914
-
-
Chen, D.S.1
Herman, T.2
Demple, B.3
-
16
-
-
0019876798
-
Purification and characterization of an apurinic/apyrimidinic endonuclease from HeLa cells
-
Kane, C. M. and Linn, S. (1981) Purification and characterization of an apurinic/apyrimidinic endonuclease from HeLa cells. J. Biol. Chem., 256, 3405-3414.
-
(1981)
J. Biol. Chem.
, vol.256
, pp. 3405-3414
-
-
Kane, C.M.1
Linn, S.2
-
17
-
-
3242710517
-
AP endonuclease-independent DNA base excision repair in human cells
-
Wiederhold, L., Leppard, J. B., Kedar, P., Karimi-Busheri, F., Rasouli-Nia, A., Weinfeld, M., Tomkinson, A. E., Izumi, T., Prasad, R., Wilson, S. H. et al. (2004) AP endonuclease-independent DNA base excision repair in human cells. Mol. Cell., 15, 209-220.
-
(2004)
Mol. Cell.
, vol.15
, pp. 209-220
-
-
Wiederhold, L.1
Leppard, J.B.2
Kedar, P.3
Karimi-Busheri, F.4
Rasouli-Nia, A.5
Weinfeld, M.6
Tomkinson, A.E.7
Izumi, T.8
Prasad, R.9
Wilson, S.H.10
-
18
-
-
0000973807
-
A deoxyribonucleic acid phosphatase-exonuclease from Escherichia coli. I. Purification of the enzyme and characterization of the phosphatase activity
-
Richardson, C. C. and Kornberg, A. (1964) A deoxyribonucleic acid phosphatase-exonuclease from Escherichia coli. I. Purification of the enzyme and characterization of the phosphatase activity. J. Biol. Chem., 239, 242-250.
-
(1964)
J. Biol. Chem.
, vol.239
, pp. 242-250
-
-
Richardson, C.C.1
Kornberg, A.2
-
19
-
-
0021943518
-
Improved M13 phage cloning vectors and host strains: Nucleotide sequences of the M13mp18 and pUC19 vectors
-
Yanisch-Perron, C., Vieira, J. and Messing, J. (1985) Improved M13 phage cloning vectors and host strains: nucleotide sequences of the M13mp18 and pUC19 vectors. Gene, 33, 103-119.
-
(1985)
Gene
, vol.33
, pp. 103-119
-
-
Yanisch-Perron, C.1
Vieira, J.2
Messing, J.3
-
20
-
-
0030597337
-
Plasmids for ectopic integration in Bacillus subtilis
-
Guerout-Fleury, A. M., Frandsen, N. and Stragier, P. (1996) Plasmids for ectopic integration in Bacillus subtilis. Gene, 180, 57-61.
-
(1996)
Gene
, vol.180
, pp. 57-61
-
-
Guerout-Fleury, A.M.1
Frandsen, N.2
Stragier, P.3
-
21
-
-
0033968143
-
A homologue of the recombination-dependent growth gene, rdgC, is involved in gonococcal pilin antigenic variation
-
Mehr, I. J., Long, C. D., Serkin, C. D. and Seifert, H. S. (2000) A homologue of the recombination-dependent growth gene, rdgC, is involved in gonococcal pilin antigenic variation. Genetics, 154, 523-532.
-
(2000)
Genetics
, vol.154
, pp. 523-532
-
-
Mehr, I.J.1
Long, C.D.2
Serkin, C.D.3
Seifert, H.S.4
-
22
-
-
79954576012
-
Differential modes of DNA binding by mismatch uracil DNA glycosylase from Escherichia coli: Implications for abasic lesion processing and enzyme communication in the base excision repair pathway
-
Grippon, S., Zhao, Q., Robinson, T., Marshall, J. J., O'Neill, R. J., Manning, H., Kennedy, G., Dunsby, C., Neil, M., Halford, S. E. et al. (2010) Differential modes of DNA binding by mismatch uracil DNA glycosylase from Escherichia coli: implications for abasic lesion processing and enzyme communication in the base excision repair pathway. Nucleic Acids Res.
-
(2010)
Nucleic Acids Res
-
-
Grippon, S.1
Zhao, Q.2
Robinson, T.3
Marshall, J.J.4
O'Neill, R.J.5
Manning, H.6
Kennedy, G.7
Dunsby, C.8
Neil, M.9
Halford, S.E.10
-
23
-
-
33646193797
-
A comparative study of uracil-DNA glycosylases from human and herpes simplex virus type 1
-
Krusong, K., Carpenter, E. P., Bellamy, S. R., Savva, R. and Baldwin, G. S. (2006) A comparative study of uracil-DNA glycosylases from human and herpes simplex virus type 1. J. Biol. Chem., 281, 4983-4992.
-
(2006)
J. Biol. Chem.
, vol.281
, pp. 4983-4992
-
-
Krusong, K.1
Carpenter, E.P.2
Bellamy, S.R.3
Savva, R.4
Baldwin, G.S.5
-
25
-
-
58649123543
-
Characterization of the meningococcal DNA glycosylase Fpg involved in base excision repair
-
Tibballs, K. L., Ambur, O. H., Alfsnes, K., Homberset, H., Frye, S. A., Davidsen, T. and Tonjum, T. (2009) Characterization of the meningococcal DNA glycosylase Fpg involved in base excision repair. BMC Microbiol., 9, 7.
-
(2009)
BMC Microbiol.
, vol.9
, pp. 7
-
-
Tibballs, K.L.1
Ambur, O.H.2
Alfsnes, K.3
Homberset, H.4
Frye, S.A.5
Davidsen, T.6
Tonjum, T.7
-
26
-
-
0029960063
-
Novel activities of human uracil DNA N-glycosylase for cytosine-derived products of oxidative DNA damage
-
Dizdaroglu, M., Karakaya, A., Jaruga, P., Slupphaug, G. and Krokan, H. E. (1996) Novel activities of human uracil DNA N-glycosylase for cytosine-derived products of oxidative DNA damage. Nucleic Acids Res., 24, 418-422.
-
(1996)
Nucleic Acids Res.
, vol.24
, pp. 418-422
-
-
Dizdaroglu, M.1
Karakaya, A.2
Jaruga, P.3
Slupphaug, G.4
Krokan, H.E.5
-
27
-
-
21844464297
-
C-T mutagenesis and gamma-radiation sensitivity due to deficiency in the Smug1 and Ung DNA glycosylases
-
An, Q., Robins, P., Lindahl, T. and Barnes, D. E. (2005) C-T mutagenesis and gamma-radiation sensitivity due to deficiency in the Smug1 and Ung DNA glycosylases. EMBO J., 24, 2205-2213.
-
(2005)
EMBO J.
, vol.24
, pp. 2205-2213
-
-
An, Q.1
Robins, P.2
Lindahl, T.3
Barnes, D.E.4
-
28
-
-
0018387063
-
Release of 7-methylguanine residues whose imidazole rings have been opened from damaged DNA by a DNA glycosylase from Escherichia coli
-
Chetsanga, C. J. and Lindahl, T. (1979) Release of 7-methylguanine residues whose imidazole rings have been opened from damaged DNA by a DNA glycosylase from Escherichia coli. Nucleic Acids Res., 6, 3673-3684.
-
(1979)
Nucleic Acids Res.
, vol.6
, pp. 3673-3684
-
-
Chetsanga, C.J.1
Lindahl, T.2
-
29
-
-
0024347210
-
Excision of the imidazole ring-opened form of N-2-aminofluorene-C(8)- guanine adduct in poly(dG-dC) by Escherichia coli formamidopyrimidine-DNA glycosylase
-
Boiteux, S., Bichara, M., Fuchs, R. P. and Laval, J. (1989) Excision of the imidazole ring-opened form of N-2-aminofluorene-C(8)-guanine adduct in poly(dG-dC) by Escherichia coli formamidopyrimidine-DNA glycosylase. Carcinogenesis, 10, 1905-1909.
-
(1989)
Carcinogenesis
, vol.10
, pp. 1905-1909
-
-
Boiteux, S.1
Bichara, M.2
Fuchs, R.P.3
Laval, J.4
-
30
-
-
0037112668
-
Human DNA glycosylases of the bacterial Fpg/MutM superfamily: An alternative pathway for the repair of 8-oxoguanine and other oxidation products in DNA
-
Morland, I., Rolseth, V., Luna, L., Rognes, T., Bjoras, M. and Seeberg, E. (2002) Human DNA glycosylases of the bacterial Fpg/MutM superfamily: an alternative pathway for the repair of 8-oxoguanine and other oxidation products in DNA. Nucleic Acids Res., 30, 4926-4936.
-
(2002)
Nucleic Acids Res.
, vol.30
, pp. 4926-4936
-
-
Morland, I.1
Rolseth, V.2
Luna, L.3
Rognes, T.4
Bjoras, M.5
Seeberg, E.6
-
31
-
-
0023992806
-
The mutY gene: A mutator locus in Escherichia coli that generates G. C-T. A transversions
-
Nghiem, Y., Cabrera, M., Cupples, C. G. and Miller, J. H. (1988) The mutY gene: a mutator locus in Escherichia coli that generates G. C-T. A transversions. Proc. Natl Acad. Sci. USA, 85, 2709-2713.
-
(1988)
Proc. Natl Acad. Sci. USA
, vol.85
, pp. 2709-2713
-
-
Nghiem, Y.1
Cabrera, M.2
Cupples, C.G.3
Miller, J.H.4
-
32
-
-
0027366974
-
Substrate specificity of the Escherichia coli endonuclease III: Excision of thymine-and cytosine-derived lesions in DNA produced by radiation-generated free radicals
-
Dizdaroglu, M., Laval, J. and Boiteux, S. (1993) Substrate specificity of the Escherichia coli endonuclease III: excision of thymine-and cytosine-derived lesions in DNA produced by radiation-generated free radicals. Biochemistry, 32, 12105-12111.
-
(1993)
Biochemistry
, vol.32
, pp. 12105-12111
-
-
Dizdaroglu, M.1
Laval, J.2
Boiteux, S.3
-
33
-
-
0024462459
-
Mechanism of DNA strand nicking at apurinic/apyrimidinic sites by Escherichia coli [formamidopyrimidine] DNA glycosylase
-
Bailly, V., Verly, W. G., O'Connor, T. and Laval, J. (1989) Mechanism of DNA strand nicking at apurinic/apyrimidinic sites by Escherichia coli [formamidopyrimidine]DNA glycosylase. Biochem. J., 262, 581-589.
-
(1989)
Biochem. J.
, vol.262
, pp. 581-589
-
-
Bailly, V.1
Verly, W.G.2
O'Connor, T.3
Laval, J.4
-
34
-
-
0032555571
-
Purification and characterization of human NTH1, a homolog of Escherichia coli endonuclease III. Direct identification of Lys-212 as the active nucleophilic residue
-
Ikeda, S., Biswas, T., Roy, R., Izumi, T., Boldogh, I., Kurosky, A., Sarker, A. H., Seki, S. and Mitra, S. (1998) Purification and characterization of human NTH1, a homolog of Escherichia coli endonuclease III. Direct identification of Lys-212 as the active nucleophilic residue. J. Biol. Chem., 273, 21585-21593.
-
(1998)
J. Biol. Chem.
, vol.273
, pp. 21585-21593
-
-
Ikeda, S.1
Biswas, T.2
Roy, R.3
Izumi, T.4
Boldogh, I.5
Kurosky, A.6
Sarker, A.H.7
Seki, S.8
Mitra, S.9
-
35
-
-
34247148838
-
A rapid reaction analysis of uracil DNA glycosylase indicates an active mechanism of base flipping
-
Bellamy, S. R., Krusong, K. and Baldwin, G. S. (2007) A rapid reaction analysis of uracil DNA glycosylase indicates an active mechanism of base flipping. Nucleic Acids Res., 35, 1478-1487.
-
(2007)
Nucleic Acids Res.
, vol.35
, pp. 1478-1487
-
-
Bellamy, S.R.1
Krusong, K.2
Baldwin, G.S.3
-
36
-
-
0018816003
-
Exonuclease III of Escherichia coli K-12, an AP endonuclease
-
Rogers, S. G. and Weiss, B. (1980) Exonuclease III of Escherichia coli K-12, an AP endonuclease. Methods Enzymol., 65, 201-211.
-
(1980)
Methods Enzymol.
, vol.65
, pp. 201-211
-
-
Rogers, S.G.1
Weiss, B.2
-
37
-
-
0023127167
-
Escherichia coli endonuclease III is not an endonuclease but a beta-elimination catalyst
-
Bailly, V. and Verly, W. G. (1987) Escherichia coli endonuclease III is not an endonuclease but a beta-elimination catalyst. Biochem. J., 242, 565-572.
-
(1987)
Biochem. J.
, vol.242
, pp. 565-572
-
-
Bailly, V.1
Verly, W.G.2
-
38
-
-
0030220956
-
Cloning of a yeast 8-oxoguanine DNA glycosylase reveals the existence of a base-excision DNA-repair protein superfamily
-
Nash, H. M., Bruner, S. D., Scharer, O. D., Kawate, T., Addona, T. A., Spooner, E., Lane, W. S. and Verdine, G. L. (1996) Cloning of a yeast 8-oxoguanine DNA glycosylase reveals the existence of a base-excision DNA-repair protein superfamily. Curr. Biol., 6, 968-980.
-
(1996)
Curr. Biol.
, vol.6
, pp. 968-980
-
-
Nash, H.M.1
Bruner, S.D.2
Scharer, O.D.3
Kawate, T.4
Addona, T.A.5
Spooner, E.6
Lane, W.S.7
Verdine, G.L.8
-
39
-
-
0027278557
-
Instability and decay of the primary structure of DNA
-
Lindahl, T. (1993) Instability and decay of the primary structure of DNA. Nature, 362, 709-715.
-
(1993)
Nature
, vol.362
, pp. 709-715
-
-
Lindahl, T.1
-
40
-
-
68849105162
-
DNA 30-phosphatase activity is critical for rapid global rates of single-strand break repair following oxidative stress
-
Breslin, C. and Caldecott, K. W. (2009) DNA 30-phosphatase activity is critical for rapid global rates of single-strand break repair following oxidative stress. Mol. Cell. Biol., 29, 4653-4662.
-
(2009)
Mol. Cell. Biol.
, vol.29
, pp. 4653-4662
-
-
Breslin, C.1
Caldecott, K.W.2
-
41
-
-
64549101955
-
Identification of a residue critical for the excision of 30-blocking ends in apurinic/apyrimidinic endonucleases of the Xth family
-
Castillo-Acosta, V. M., Ruiz-Perez, L. M., Yang, W., Gonzalez-Pacanowska, D. and Vidal, A. E. (2009) Identification of a residue critical for the excision of 30-blocking ends in apurinic/apyrimidinic endonucleases of the Xth family. Nucleic Acids Res., 37, 1829-1842.
-
(2009)
Nucleic Acids Res.
, vol.37
, pp. 1829-1842
-
-
Castillo-Acosta, V.M.1
Ruiz-Perez, L.M.2
Yang, W.3
Gonzalez-Pacanowska, D.4
Vidal, A.E.5
|