Obstructed metabolite diffusion within skeletal muscle cells in silico

Molecular and Cellular Biochemistry

Volumn 358, Issue 1-2, 2011, Pages 105-119

  Aliev, Mayis K ^a   Tikhonov, Alexander N ^b  

^a INSTITUTE OF EXPERIMENTAL CARDIOLOGY   (Russian Federation)

^b MOSCOW STATE UNIVERSITY   (Russian Federation)

Author keywords

Monte Carlo simulation; Obstructed metabolite diffusion; Skeletal muscles

Indexed keywords

ANIMAL; ARTICLE; BIOLOGICAL MODEL; CELL COMPARTMENTALIZATION; CELL MEMBRANE PERMEABILITY; COMPUTER SIMULATION; CYTOLOGY; DIFFUSION; METABOLISM; MUSCLE CELL; MUSCLE FIBRIL; RABBIT; SKELETAL MUSCLE; TIME;

ANIMALS; CELL COMPARTMENTATION; CELL MEMBRANE PERMEABILITY; COMPUTER SIMULATION; DIFFUSION; MODELS, BIOLOGICAL; MUSCLE CELLS; MUSCLE, SKELETAL; MYOFIBRILS; RABBITS; TIME FACTORS;

EID: 84857176770     PISSN: 03008177     EISSN: 15734919     Source Type: Journal    
DOI: 10.1007/s11010-011-0926-y     Document Type: Article

References (63)

1. Kao HP, Abney JR, Verkman AS (1993) Determinants of translational mobility of a small solute in cell cytoplasm. J Cell Biol 120:175-184
2. Verkman AS (2002) Solute and macromolecule diffusion in cellular aqueous compartments. Trends Biochem Sci 27:27-33
3. Vendelin M, Birkedal R (2008) Anisotropic diffusion of fluorescently labeled ATP in rat cardiomyocytes determined by raster image correlation spectroscopy. Am J Physiol 295:C1302-C1315
4. Luby-Phelps K (2000) Cytoarchitecture and physical properties of cytoplasm: volume, viscosity, diffusion, intracellular surface area. Int Rev Cytol 192:189-221
5. Partikian A, Olveczky B, Swaminathan R, Li Y, Verkman AS (1998) Rapid diffusion of green fluorescent protein in the mitochondrial matrix. J Cell Biol 140:821-829
6. Nicolay K, Braun KPJ, de Graaf RA, Dijkhuizen RM, Kruiskamp MJ (2001) Diffusion NMR spectroscopy. NMR Biomed 14:94-111
7. Papadopoulos S, Jurgens KD, Gros G (2000) Protein diffusion in living skeletal muscle fibers: dependence on protein size, fiber type, and contraction. Biophys J 79:2084-2094
8. Walter H (2000) Consequences of phase separation in cytoplasm. Int Rev Cytol 192:331-343
9. Spitzer JJ, Pooμman B (2005) Electrochemical structure of the crowded cytoplasm. Trends Biochem Sci 30:536-541
10. Ovadi J, Srere PA (2000) Macromolecular compartmentation and channeling. Int Rev Cytol 192:255-280
11. Ovadi J, Saks V (2004) On the origin of intracellular compartmentation and organized metabolic systems. Mol Cell Biochem 256(257):5-12
12. Vendelin M, Lemba M, Saks VA (2004) Analysis of functional coupling: mitochondrial creatine kinase and adenine nucleotide translocase. Biophys J 87:696-713
13. van Gelderen P, DesPres D, van Zijl PCM, Moonen CTW (1994) Evaluation of restricted diffusion in cylinders. Phosphocreatine in rabbit leg muscle. J Magn Res B 103:255-260
14. Kinsey ST, Locke B, Penke B, Moerland TS (1999) Diffusional anisotropy is induced by subcellular barriers in skeletal muscle. NMR Biomed 12:1-7
15. de Graaf RA, van Kranenburg A, Nicolay K (2000) In vivo 31PNMR diffusion spectroscopy of ATP and phosphocreatine in rat skeletal muscle. Biophys J 78:1657-1664
16. Gabr RE, El-Sharkawy A-MM, Schar M, Weiss RG, Bottomley PA (2011) High-energy phosphate transfer in human muscle: the diffusion of phosphocreatine. Am J Physiol Cell Physiol. doi: 10.1152/ajpcell.00500.2010
17. Kinsey ST, Locke BR, Dillaman RM (2011) Molecules in motion: influences of diffusion on metabolic structure and function in skeletal muscle. J Exp Biol 214:263-274
18. Kushmerick MJ, Podolsky RJ (1969) Ionic mobility in muscle cells. Science 166:1297-1298
19. Aliev MK, Tikhonov AN (2004) Random walk analysis of restricted metabolite diffusion in skeletal myofibril systems. Mol Cell Biochem 256(257):257-266
20. Saks VA, Kaambre T, Sikk P, Eimre M, Orlova E, Paju K, Piirsoo A, Appaix F, Kay L, Regitz-Zagrosek V, Fleck E, Seppet E (2001) Intracellular energetic units in red muscle cells. Biochem J 356:643-657
21. Seppet EK, Kaambre T, Sikk P, Tiivel T, Vija H, Tonkonogi M, Sahlin K, Kay L, Appaix F, Braun U, Eimre M, Saks VA (2001) Functional complexes of mitochondria with Ca, MgATPases of myofibrils and sarcoplasmic reticulum in muscle cells. Biochim Biophys Acta 1504:379-395
22. Vendelin M, Eimre M, Seppet E, Peet N, Andrienko T, Lemba M, Engelbrecht J, Seppet EK, Saks VA (2004) Intracellular diffusion of adenosine phosphates is locally restricted in cardiac muscle. Mol Cell Biochem 256(257):229-241
23. Saks V, Beraud N, Wallimann T (2008) Metabolic compartmentation-a system level property of muscle cells: real problems of diffusion in living cells. Int J Mol Sci 9:751-767
24. Shorten PR, Sneyd J (2009) A mathematical analysis of obstructed diffusion within skeletal muscle. Biophys J 96:4764-4778
25. Sommer RJ, Johnson EA (1979) Ultrastructure of cardiac muscle. In: Burns RM (ed) Handbook of physiology. The cardiovascular system. Bethesda, MD, Am Physiol Soc, pp 113-186 Section 2, Vol. 1, Chapter 5
26. Eisenberg BR, Kuda AM, Peter JB (1974) Stereological analysis of mammalian skeletal muscle I. Soleus muscle of the adult guinea pig. J Cell Biol 60:732-754
27. Eisenberg BR, Kuda AM (1975) Stereological analysis of mammalian skeletal muscle II. White Vastus muscle of the adult guinea pig. J Ultrastruct Res 51:176-187
28. Crowe LM, Baskin RJ (1979) Stereologic analysis of dystrophic chicken muscle. Am J Pathol 95:295-316
29. Mobley BA, Eisenberg BR (1975) Sizes of components in frog skeletal muscle measured by methods of stereology. J Gen Physiol 66:31-45
30. Uhrik B, Novotova M, Zachar J (1980) A quantitative estimation of components in Crayfish muscle fibers by stereological methods. Pflug Arch 387:281-286
31. Crowe LM, Baskin RJ (1981) Activation of the contractile system in crustacean muscle: ultrastructural evidence for the role of the T system. Tissue Cell 13:153-164
32. Anversa P, Olivetti G, Melissari M, Loud AV (1979) Morphometric study of myocardial hypertrophy induced by abdominal aortic stenosis. Lab Invest 40:341-349
33. Kinsey ST, Moerland TS (2002) Metabolite diffusion in giant muscle fibers of the spiny lobster Panulirus argus. J Exp Biol 205:3377-3386
34. Tyler S, Sidell BD (1984) Changes in mitochondrial distribution and diffusion distances in muscle of Goldfish upon acclimation to warm and cold temperatures. J Exp Zool 232:1-9
35. Korostyshevskaya IM, Maksimov VF, Shoshenko KA (2001) Features of capillarization and mitochondria from gastrocnemius and pectoral muscle fibers in chickens of various age. Morfologiia 120:30-36 Article in Russian
36. Jahromi SS, Atwood HL (1971) Structural and contractile properties of lobster leg-muscle fibers. J Exp Zool 176:475-486
37. Meyer RA, Sweeney HL, Kushmerick MJ (1984) A simple analysis of the "phosphocreatine shuttle". Am J Physiol 246: C365-C377
38. Aliev MK, Saks VA (1997) Compartmentalized energy transfer in cardiomyocytes: use of mathematical modeling for analysis of in vivo regulation of respiration. Biophys J 73:428-445
39. Matsumoto M, Nishimura T (1998) Mersenne twister: a 623-dimensionally equidistributed uniform pseudorandom number generator. ACM T Model Comput S 8:3-30
40. Eisenberg BR, Mathias RT, Gilai A (1979) Intracellular localization of markers within injected or cut frog muscle fibers. Am J Physiol 237:C50-C505
41. Kaasik A, Veksler V, Boehm E, Novotova M, Minaeva A, Ventura-Clapier R (2001) Energetic crosstalk between organelles. Architectural integration of energy production and utilization. Circ Res 89:153-159
42. Saks V, Vendelin M, Aliev MK, Kekelidze T, Engelbrect J (2007) Mechanisms and modeling of energy transfer between and among intracellular compartments. In: Gibson Gary, Dienel Gerry (eds) Handbook of neurochemistry, molecular neurobiology "Brain energetics: integration of molecular, cellular processes," Vol. 5, 3rd edn. Springer, Berlin, Heidelberg, pp 815-860
43. Saks V, Guzun R, Timohhina N, Tepp K, Varikmaa M, Monge C, Beraud N, Kaambre T, Kuznetsov A, Kadaja L, Eimre M, Seppet E (2010) Structure-function relationships in feedback regulation of energy fluxes in vivo in health and disease: mitochondrial interactosome. Biochim Biophys Acta 1797:678-697
44. Guzun R, Karu-Varikmaa M, Granillo MG, Kuznetsov AV, Michel L, Cottet-Rousselle C, Saaremae M, Kaambre T, Metsis M, Grimm M, Auffray C, Saks V (2011) Mitochondria-cytoskeleton interaction: distribution of b-tubulins in cardiomyocytes and HL-1 cells. Biochim Biophys Acta 1807:458-469
45. Ramay HR, Vendelin M (2009) Diffusion restrictions surrounding mitochondria: a mathematical model of heart muscle fibers. Biophys J 97:443-452
46. Tiegs OW (1935) Observations on the structure of striated muscle fibre. Proc Roy Soc Lond B 116:38-54
47. Peachey LD, Eisenberg BR (1978) Helicoids in the T system and striations of frog skeletal muscle fibers seen by high voltage electron microscopy. Biophys J 22:145-154
48. Rudel R, Thaer A (1981) Helical arrangements of myofibrils in frog skeletal muscle fibres. J Physiol (Lond) 318:28P-29P
49. Sundell CL, Goldman YE, Peachey LD (1986) Fine structure in near-field and far-field laser diffraction patterns from skeletal muscle fibers. Biophys J 49:521-530
50. Brenner B (1985) Sarcomeric domain organization within single skinned rabbit psoas fibers and its effects on laser diffraction patterns. Biophys J 48:967-982
51. Zite-Ferenczy F, Haberle K-D, Rudel R, Wilke W (1986) Correlation between the light diffraction pattern and the structure of a muscle fibre realized with Ewalds construction. J Muscle Res. Cell Motil 7:197-214
52. Tiegs OW (1955) The flight muscles of insects-their anatomy and histology; with some observations on the structure of striated muscle in general. Phil Trans R Soc Lond B 238:221-348
53. Rudel R, Zite-Ferenczy F (1979) Do laser diffraction studies on striated muscle indicate stepwise sarcomere shortening? Nature 278:573-575
54. Brenner B (1983) Technique for stabilizing the striation pattern in maximally calcium-activated skinned rabbit psoas fibers. Biophys J 41:99-102
55. Paμmer RE, Roos KP (1997) Extent of radial sarcomere coupling revealed in passively stretched cardiac myocytes. Cell Motil Cytoskeleton 37:378-388
56. Hawke TJ, Garry DJ (2001) Myogenic satellite cells: physiology to molecular biology. J Appl Physiol 91:534-551
57. Allen DL, Roy RR, Edgerton VR (1999) Myonuclear domains in muscle adaptation and disease. Muscle Nerve 22:1350-1360
58. Wakelam MJO (1985) The fusion of myoblasts. Biochem J 228:1-12
59. Doberstein SK, Fetter RD, Mehta AY, Goodman CS (1997) Genetic analysis of myoblast fusion: blown fuse is required for progression beyond the prefusion complex. J Cell Biol 136:1249-1261
60. Towler MC, Kaufman SJ, Brodsky FM (2004) Membrane traffic in skeletal muscle. Traffic 5:129-139
61. Fulton AB, Prives J, Farmer SR, Penman S (1981) Developmental reorganization of the skeletal framework and its surface lamina in fusing muscle cells. J Cell Biol 91:103-112
62. Kadi F, Eriksson A, Hoμmner S, Butler-Browne GS, Thornell L-E (1999) Cellular adaptation of the trapezius muscle in strengthtrained athletes. Histochem Cell Biol 111:189-195
63. Bruusgaard JC, Liestol K, Ekmark M, Kollstad K, Gundersen K (2003) Number and spatial distribution of nuclei in the muscle fibres of normal mice studied in vivo. J Physiol 551:467-478