Gene-expression measurement: Variance-modeling considerations for robust data analysis

Nature Immunology

Volumn 13, Issue 3, 2012, Pages 199-203

  Subramaniam, Shankar ^a   Hsiao, Gene ^a  

^a UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

DNA MICROARRAY; GENE EXPRESSION; HUMAN; NONHUMAN; PRIORITY JOURNAL; REVIEW; RNA SEQUENCE; STATISTICAL MODEL; VARIANCE;

ANALYSIS OF VARIANCE; ANIMALS; GENE EXPRESSION; HUMANS; MODELS, IMMUNOLOGICAL; SEQUENCE ANALYSIS, RNA;

EID: 84857156571     PISSN: 15292908     EISSN: 15292916     Source Type: Journal    
DOI: 10.1038/ni.2244     Document Type: Review

References (18)

1. Jenner, R.G. & Young, R.A. Nat. Rev. Microbiol. 3, 281-294 (2005).
2. Papin, J. et al. Nat. Rev. Mol. Cell Biol. 6, 99-111 (2005).
3. Allison, D.B. et al. Nat. Rev. Genet. 7, 55-65 (2006).
4. Benjamini, Y. & Hochberg, Y. J. R. Stat. Soc. B 57, 289-300 (1995).
5. Tusher, V.G. et al. Proc. Natl. Acad. Sci. USA 98, 5116-5121 (2001).
6. Baldi, P. & Long, A.D. Bioinformatics 17, 509-519 (2001).
7. Smyth, G. K. Stat. Appl. Genet. Mol. Biol. 3, 1-25 (2004).
8. Hsiao, A. & Subramaniam, S. Syst. Synth. Biol. 2, 95-104 (2008).
9. Hsiao, A. et al. Bioinformatics 20, 3108-3127 (2004).
10. Jeanmougin, M. et al. PLoS ONE 5, 1-9 (2010).
11. Irizarry, R.A. et al. Biostatistics 4, 249-264 (2003).
12. Zhu, Q. et al. BMC Bioinformatics 11, 285-302 (2010).
13. Sears, D.D. et al. Proc. Natl. Acad. Sci. USA 106, 18745-18750 (2009).
14. Hsiao, G. et al. Am. J. Physiol. 300, 164-174 (2011).
15. Mortazavi, A. et al. Nat. Methods 5, 621-628 (2008).
16. Marioni, J.C. et al. Genome Res. 18, 1509-1517 (2008).
17. Anders, S. & Huber, W. Genome Biol. 11, R106-R118 (2010).
18. Pulendran, B. Nat. Rev. Immunol. 9, 741-747 (2009).